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Conserved domains on  [gi|651297132|ref|WP_026428880|]
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ABC-three component system middle component 6 [Actinotignum schaalii]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
MC6 pfam20293
ABC-three component (ABC-3C) system Middle Component 6; Middle Components (MCs) of the ABC-3C ...
 3-82 3.28e-16

ABC-three component (ABC-3C) system Middle Component 6; Middle Components (MCs) of the ABC-3C biological conflict systems occupy the central position between the catalytic effector and ABC ATPases of the systems. MCs are defined by distinctive patterns of conserved charged residues. As some MCs are HTH domains, they are predicted to function akin to kleisins as DNA-binding partners for the ABC ATPases, assisting in recognition and responding to invasive elements such as DNA viruses. MC6 is a MC unifiable with the HTH fold.


:

Pssm-ID: 466443  Cd Length: 76  Bit Score: 66.13  E-value: 3.28e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651297132   3 LPTKGITPDQALLTVGARIIELLD--SPATVSALWEKLskdsknAEPQRGTNISFSWFSLALSMLFAINALSWNESGKLV 80
Cdd:pfam20293  1 LPTKHIHPERSLYYVGAIVLALLKknPELTVDELWERL------KSWRSLSNISFDWFVLALDWLFLIGAIELNDGGLVR 74


                 ..
gi 651297132  81 IH 82
Cdd:pfam20293 75 LC 76
 
Name Accession Description Interval E-value
MC6 pfam20293
ABC-three component (ABC-3C) system Middle Component 6; Middle Components (MCs) of the ABC-3C ...
 3-82 3.28e-16

ABC-three component (ABC-3C) system Middle Component 6; Middle Components (MCs) of the ABC-3C biological conflict systems occupy the central position between the catalytic effector and ABC ATPases of the systems. MCs are defined by distinctive patterns of conserved charged residues. As some MCs are HTH domains, they are predicted to function akin to kleisins as DNA-binding partners for the ABC ATPases, assisting in recognition and responding to invasive elements such as DNA viruses. MC6 is a MC unifiable with the HTH fold.


Pssm-ID: 466443  Cd Length: 76  Bit Score: 66.13  E-value: 3.28e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651297132   3 LPTKGITPDQALLTVGARIIELLD--SPATVSALWEKLskdsknAEPQRGTNISFSWFSLALSMLFAINALSWNESGKLV 80
Cdd:pfam20293  1 LPTKHIHPERSLYYVGAIVLALLKknPELTVDELWERL------KSWRSLSNISFDWFVLALDWLFLIGAIELNDGGLVR 74


                 ..
gi 651297132  81 IH 82
Cdd:pfam20293 75 LC 76
 
Name Accession Description Interval E-value
MC6 pfam20293
ABC-three component (ABC-3C) system Middle Component 6; Middle Components (MCs) of the ABC-3C ...
 3-82 3.28e-16

ABC-three component (ABC-3C) system Middle Component 6; Middle Components (MCs) of the ABC-3C biological conflict systems occupy the central position between the catalytic effector and ABC ATPases of the systems. MCs are defined by distinctive patterns of conserved charged residues. As some MCs are HTH domains, they are predicted to function akin to kleisins as DNA-binding partners for the ABC ATPases, assisting in recognition and responding to invasive elements such as DNA viruses. MC6 is a MC unifiable with the HTH fold.


Pssm-ID: 466443  Cd Length: 76  Bit Score: 66.13  E-value: 3.28e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651297132   3 LPTKGITPDQALLTVGARIIELLD--SPATVSALWEKLskdsknAEPQRGTNISFSWFSLALSMLFAINALSWNESGKLV 80
Cdd:pfam20293  1 LPTKHIHPERSLYYVGAIVLALLKknPELTVDELWERL------KSWRSLSNISFDWFVLALDWLFLIGAIELNDGGLVR 74


                 ..
gi 651297132  81 IH 82
Cdd:pfam20293 75 LC 76
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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