|
Name |
Accession |
Description |
Interval |
E-value |
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
19-424 |
0e+00 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 540.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 19 PVLSTQSFAQLHLEIAKAPEEAPKIAIVPFGND----------QSIYPIVENDLNRSGKFTSSSKN--LAATASMNNPNA 86
Cdd:TIGR02800 1 LAVSTPAAADLTIEITKGGASALPIAVAPFSNDgggspdanlgESIAEVIANDLKRSGLFSPVDKAglPSNPIAESQVNP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 87 AAWQAAGVPYVVTGNVKATAEGGYEVHYQLYDVQKQQ-YLLNELLSVPASRVRSAAHMISDAIYEALTGIKGDFSGRIAY 165
Cdd:TIGR02800 81 AAWQALGADALVVGSVTPNGNGRYTVRFRLYDVVSGQlQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIAY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 166 VLRNPATpeQRYTLQIADTDGEQPKTILTSRDPILSPAWTPDAKKIAYVSFETKRPAIYVQDLATGQREKLASFRGLNGA 245
Cdd:TIGR02800 161 VSKSGKS--RRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 246 PSFSPDGQSMLFTASMHGNPEIYQMNLSTRELRRMTNDSAIDTEARYAPDGKSFIYTSDRGGSAQIYRYDFATGSSKRLT 325
Cdd:TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 326 FRGAFNARGTLSADGRKLALVHRpSGSNYKVAIQDINTNITNILTPTSLDESPSFSPNGQMVVYATREGARGLLSIMSLD 405
Cdd:TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397
|
410
....*....|....*....
gi 651313546 406 GRFRMNLPSEQGEVREPAW 424
Cdd:TIGR02800 398 GRFRARLPLGNGDVREPAW 416
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
255-407 |
8.27e-45 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 152.90 E-value: 8.27e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 255 MLFTASMHGNPEIYQMNLSTRELRRMTNDSAIDTEARYAPDGKSFIYTSDRGGSAQIYRYDFATGSSKRLTFRGAFNARG 334
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 651313546 335 TLSADGRKLALVHRPSGsNYKVAIQDINTNITNILTPTSLdeSPSFSPNGQMVVYATREGARGLLSIMSLDGR 407
Cdd:COG0823 81 SWSPDGKRLAFVSRSDG-RFDIYVLDLDGGAPRRLTDGPG--SPSWSPDGRRIVFSSDRGGRPDLYVVDLDGR 150
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
57-424 |
1.00e-26 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 111.01 E-value: 1.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 57 IVENDlNRSGKFTSS-----SKNLAATASMNNPNAAAWQAAGVPYVVTGNVKATaeggyeVHYQLYDVQKQQYLLNELLS 131
Cdd:PRK01029 45 TSPKD-AKQQSYLRSledifAFDLALGDLLQPTKESKESSAPLFIFIEAHYPEL------VFSLKKEGKNPQKLFSLELS 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 132 VPASRVRSAAHMISDAIYEALTGIKGDFSGRIAYVLR-NPATPEQRYT-LQIADTDGEQPKTILTSRDPILSPAWTPDAK 209
Cdd:PRK01029 118 GDLSKDRQKIHEAADTIHYALTGVPGISSGKIIFSLStTNSDTELKQGeLWSVDYDGQNLRPLTQEHSLSITPTWMHIGS 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 210 KIA--YVSFETKRPAIYVQDLATGQREKLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIY--QMNLSTREL---RRMTN 282
Cdd:PRK01029 198 GFPylYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFiqSFSLETGAIgkpRRLLN 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 283 DS-AIDTEARYAPDGKSFIYTSDRGGSAQIYRYDF-ATGSSKRL-TFRGAFNARGTLSADGRKLALVHRPSGSNyKVAIQ 359
Cdd:PRK01029 278 EAfGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIdPEGQSPRLlTKKYRNSSCPAWSPDGKKIAFCSVIKGVR-QICVY 356
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 651313546 360 DINTNITNILTPTSLD-ESPSFSPNGQMVVYATREGARGLLSIMSLDGRFRMNLPSEQGEVREPAW 424
Cdd:PRK01029 357 DLATGRDYQLTTSPENkESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSW 422
|
|
| TolB_N |
pfam04052 |
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent ... |
29-125 |
5.27e-26 |
|
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain.
Pssm-ID: 461148 Cd Length: 105 Bit Score: 101.16 E-value: 5.27e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 29 LHLEIAKAPEEAPKIAIVPFGND------QSIYPIVENDLNRSGKFTSSSKNLAATASMNN--PNAAAWQAAGVPYVVTG 100
Cdd:pfam04052 1 LRIEITGGGDTALPIAVVPFQGEggadlpQDISEVIAADLERSGLFRPIDPAAFPQRPTSDseVDFADWRALGADALVTG 80
|
90 100
....*....|....*....|....*
gi 651313546 101 NVKATAEGGYEVHYQLYDVQKQQYL 125
Cdd:pfam04052 81 SVTRGGDGRYKVEFRLYDVVKGKQL 105
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| propeller_TolB |
TIGR02800 |
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB ... |
19-424 |
0e+00 |
|
tol-pal system beta propeller repeat protein TolB; Members of this protein family are the TolB periplasmic protein of Gram-negative bacteria. TolB is part of the Tol-Pal (peptidoglycan-associated lipoprotein) multiprotein complex, comprising five envelope proteins, TolQ, TolR, TolA, TolB and Pal, which form two complexes. The TolQ, TolR and TolA inner-membrane proteins interact via their transmembrane domains. The {beta}-propeller domain of the periplasmic protein TolB is responsible for its interaction with Pal. TolB also interacts with the outer-membrane peptidoglycan-associated proteins Lpp and OmpA. TolA undergoes a conformational change in response to changes in the proton-motive force, and interacts with Pal in an energy-dependent manner. The C-terminal periplasmic domain of TolA also interacts with the N-terminal domain of TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi , Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. [Transport and binding proteins, Other, Cellular processes, Pathogenesis]
Pssm-ID: 274305 [Multi-domain] Cd Length: 417 Bit Score: 540.32 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 19 PVLSTQSFAQLHLEIAKAPEEAPKIAIVPFGND----------QSIYPIVENDLNRSGKFTSSSKN--LAATASMNNPNA 86
Cdd:TIGR02800 1 LAVSTPAAADLTIEITKGGASALPIAVAPFSNDgggspdanlgESIAEVIANDLKRSGLFSPVDKAglPSNPIAESQVNP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 87 AAWQAAGVPYVVTGNVKATAEGGYEVHYQLYDVQKQQ-YLLNELLSVPASRVRSAAHMISDAIYEALTGIKGDFSGRIAY 165
Cdd:TIGR02800 81 AAWQALGADALVVGSVTPNGNGRYTVRFRLYDVVSGQlQLLGKQYTVTASQLRRVAHRIADAIYEKLTGERGAFSTRIAY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 166 VLRNPATpeQRYTLQIADTDGEQPKTILTSRDPILSPAWTPDAKKIAYVSFETKRPAIYVQDLATGQREKLASFRGLNGA 245
Cdd:TIGR02800 161 VSKSGKS--RRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGA 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 246 PSFSPDGQSMLFTASMHGNPEIYQMNLSTRELRRMTNDSAIDTEARYAPDGKSFIYTSDRGGSAQIYRYDFATGSSKRLT 325
Cdd:TIGR02800 239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 326 FRGAFNARGTLSADGRKLALVHRpSGSNYKVAIQDINTNITNILTPTSLDESPSFSPNGQMVVYATREGARGLLSIMSLD 405
Cdd:TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHR-EGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397
|
410
....*....|....*....
gi 651313546 406 GRFRMNLPSEQGEVREPAW 424
Cdd:TIGR02800 398 GRFRARLPLGNGDVREPAW 416
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
255-407 |
8.27e-45 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 152.90 E-value: 8.27e-45
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 255 MLFTASMHGNPEIYQMNLSTRELRRMTNDSAIDTEARYAPDGKSFIYTSDRGGSAQIYRYDFATGSSKRLTFRGAFNARG 334
Cdd:COG0823 1 LAFTLSRDGNSDIYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASP 80
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 651313546 335 TLSADGRKLALVHRPSGsNYKVAIQDINTNITNILTPTSLdeSPSFSPNGQMVVYATREGARGLLSIMSLDGR 407
Cdd:COG0823 81 SWSPDGKRLAFVSRSDG-RFDIYVLDLDGGAPRRLTDGPG--SPSWSPDGRRIVFSSDRGGRPDLYVVDLDGR 150
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
163-325 |
4.47e-34 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 124.78 E-value: 4.47e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 163 IAYVLRNPATPEqrytLQIADTDGEQPKTILTSRDPILSPAWTPDAKKIAYVSFETKRPAIYVQDLATGQREKLASFRGL 242
Cdd:COG0823 1 LAFTLSRDGNSD----IYVVDLDGGEPRRLTNSPGIDTSPAWSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGY 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 243 NGAPSFSPDGQSMLFTASMHGNPEIYQMNLSTRELRRMTNDsaiDTEARYAPDGKSFIYTSDRGGSAQIYRYDFaTGSSK 322
Cdd:COG0823 77 NASPSWSPDGKRLAFVSRSDGRFDIYVLDLDGGAPRRLTDG---PGSPSWSPDGRRIVFSSDRGGRPDLYVVDL-DGRKR 152
|
...
gi 651313546 323 RLT 325
Cdd:COG0823 153 RLT 155
|
|
| tolB |
PRK01029 |
Tol-Pal system protein TolB; |
57-424 |
1.00e-26 |
|
Tol-Pal system protein TolB;
Pssm-ID: 234889 [Multi-domain] Cd Length: 428 Bit Score: 111.01 E-value: 1.00e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 57 IVENDlNRSGKFTSS-----SKNLAATASMNNPNAAAWQAAGVPYVVTGNVKATaeggyeVHYQLYDVQKQQYLLNELLS 131
Cdd:PRK01029 45 TSPKD-AKQQSYLRSledifAFDLALGDLLQPTKESKESSAPLFIFIEAHYPEL------VFSLKKEGKNPQKLFSLELS 117
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 132 VPASRVRSAAHMISDAIYEALTGIKGDFSGRIAYVLR-NPATPEQRYT-LQIADTDGEQPKTILTSRDPILSPAWTPDAK 209
Cdd:PRK01029 118 GDLSKDRQKIHEAADTIHYALTGVPGISSGKIIFSLStTNSDTELKQGeLWSVDYDGQNLRPLTQEHSLSITPTWMHIGS 197
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 210 KIA--YVSFETKRPAIYVQDLATGQREKLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIY--QMNLSTREL---RRMTN 282
Cdd:PRK01029 198 GFPylYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFiqSFSLETGAIgkpRRLLN 277
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 283 DS-AIDTEARYAPDGKSFIYTSDRGGSAQIYRYDF-ATGSSKRL-TFRGAFNARGTLSADGRKLALVHRPSGSNyKVAIQ 359
Cdd:PRK01029 278 EAfGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIdPEGQSPRLlTKKYRNSSCPAWSPDGKKIAFCSVIKGVR-QICVY 356
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 651313546 360 DINTNITNILTPTSLD-ESPSFSPNGQMVVYATREGARGLLSIMSLDGRFRMNLPSEQGEVREPAW 424
Cdd:PRK01029 357 DLATGRDYQLTTSPENkESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIGSGEKRFPSW 422
|
|
| tolB |
PRK04043 |
Tol-Pal system protein TolB; |
30-405 |
2.90e-26 |
|
Tol-Pal system protein TolB;
Pssm-ID: 235212 [Multi-domain] Cd Length: 419 Bit Score: 109.70 E-value: 2.90e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 30 HLEIAKAPEEAPKIAIVPFGND------QSIYPIVENDLNRSGKFtSSSKNLAATASMNNPNAAAWQaaGVPYVVTGNVK 103
Cdd:PRK04043 20 TLDIVKKGQKLPKIVVEDASDLndanlkKKFFKILVNDLKVSSHF-EVSENKDQSSGDINYNELKDK--KVDLVFRYSLA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 104 ATAEGGYEVHYQLYDVQKQQYLLNELLSVP-ASRVRSAAHMISDAIYEALTGIKGDFSGRiaYVLRNPATPEQRYTLQIA 182
Cdd:PRK04043 97 NKNGNKLSLRVKLYDVNTGSLKFEKDYTINsLDRYPFLAHKSAIDINDYLKAPSIDWMKR--KVVFSKYTGPKKSNIVLA 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 183 DTDGEQPKTILTSRDPILsPAWTPDA-KKIAYVSFETKRPAIYVQDLATGQREKLASFRGLNGAPSFSPDGQSMLFTASM 261
Cdd:PRK04043 175 DYTLTYQKVIVKGGLNIF-PKWANKEqTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 262 HGNPEIYQMNLSTRELRRMTNDSAIDTEARYAPDGKSFIYTSDRGGSAQIYRYDFATGSSKRLTFRGAFNArgTLSADGR 341
Cdd:PRK04043 254 KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNS--SVSTYKN 331
|
330 340 350 360 370 380 390
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 342 KLALVHRPS----GSNyKVAIQDINTNITNI--LTPTSLDESPSFSPNGQMVVYATREGARGLLSIMSLD 405
Cdd:PRK04043 332 YIVYSSRETnnefGKN-TFNLYLISTNSDYIrrLTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400
|
|
| TolB_N |
pfam04052 |
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent ... |
29-125 |
5.27e-26 |
|
TolB amino-terminal domain; TolB is an essential periplasmic component of the tol-dependent translocation system. This function of this amino terminal domain is uncertain.
Pssm-ID: 461148 Cd Length: 105 Bit Score: 101.16 E-value: 5.27e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 29 LHLEIAKAPEEAPKIAIVPFGND------QSIYPIVENDLNRSGKFTSSSKNLAATASMNN--PNAAAWQAAGVPYVVTG 100
Cdd:pfam04052 1 LRIEITGGGDTALPIAVVPFQGEggadlpQDISEVIAADLERSGLFRPIDPAAFPQRPTSDseVDFADWRALGADALVTG 80
|
90 100
....*....|....*....|....*
gi 651313546 101 NVKATAEGGYEVHYQLYDVQKQQYL 125
Cdd:pfam04052 81 SVTRGGDGRYKVEFRLYDVVKGKQL 105
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
203-426 |
8.35e-18 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 86.25 E-value: 8.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 203 AWTPDAKKIAYVS----FETKRPAIYVQDLATGQREKLASFRGlnGAPSFSPDGQSMLFTASM----------HG-NPEI 267
Cdd:COG4946 111 GWTPDGKSVLFASnrgsPPSRSNQLYTVPVDGGLPERLPLPPA--GDGSFSPDGKKLAYTRIGrefrtwkryrGGtAGDI 188
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 268 YQMNLSTRELRRMTNDSAIDTEaryaP--DGKSFIYTSDRGGSAQIYRYDFATGSSKRLTFRGAFNARGtLSADGRKLAL 345
Cdd:COG4946 189 WIYDLGTGEFTRLTDFGGNDRN----PmwIGDRIYFLSDRDGTFNLYSYDPDGKDLRQLTHFKDFDVRF-PSTDGGRIVY 263
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 346 -----VHR---PSGSNYKVAIqDINTNITNiLTPTSLD-----ESPSFSPNGQMVVYAtregARGLLSIMSLDGRFRMNL 412
Cdd:COG4946 264 eqggdLYLldlASGEPRKLNI-TLAGDFPQ-RRPRWVDvsgylTSFALSPDGKRVAFE----ARGEVFTVPAEKGPTRNL 337
|
250
....*....|....*
gi 651313546 413 PSEQGE-VREPAWAP 426
Cdd:COG4946 338 TNTPGVrERLPAWSP 352
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
223-402 |
2.08e-17 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 84.70 E-value: 2.08e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 223 IYVQDLATGQREKLA----------------SFRGLNGApSFSPDGQSMLFTAsmHGnpEIYqmNLSTRE--LRRMTNDS 284
Cdd:COG4946 269 LYLLDLASGEPRKLNitlagdfpqrrprwvdVSGYLTSF-ALSPDGKRVAFEA--RG--EVF--TVPAEKgpTRNLTNTP 341
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 285 AI-DTEARYAPDGKSFIYTSDRGGSAQIYRYDFATGS-SKRLT-FRGAFNARGTLSADGRKLALVHRpsgsNYKVAIQDI 361
Cdd:COG4946 342 GVrERLPAWSPDGKSIAYFSDASGEYELYIAPADGSGePKQLTlGDLGRVFNPVWSPDGKKIAFTDN----RGRLWVVDL 417
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 651313546 362 NT-NITNILTPTSLDE--SPSFSPNGQMVVYaTREGARGLLSIM 402
Cdd:COG4946 418 ASgKVRKVDTDGYGDGisDLAWSPDSKWLAY-SKPGPNQLSQIF 460
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
176-323 |
7.84e-17 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 83.16 E-value: 7.84e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 176 RYTLQIADTDGEQPKTILTSRDP--ILSPAWTPDAKKIAYVSfetKRPAIYVQDLATGQREKLAS--FRGLNGAPSFSPD 251
Cdd:COG4946 366 EYELYIAPADGSGEPKQLTLGDLgrVFNPVWSPDGKKIAFTD---NRGRLWVVDLASGKVRKVDTdgYGDGISDLAWSPD 442
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 651313546 252 GQSMLFTASMH-GNPEIYQMNLSTRELRRMTNDSAIDTEARYAPDGKSFIYTSDRGGSAQIYRYDFATGSSKR 323
Cdd:COG4946 443 SKWLAYSKPGPnQLSQIFLYDVETGKTVQLTDGRYDDGSPAFSPDGKYLYFLSSRDFNPTYGDLDFDLAFPRT 515
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
223-383 |
3.56e-15 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 77.77 E-value: 3.56e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 223 IYVQDLATGQREKLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQMNLSTRELRRMTNDSAIDTEARYAPDGKSFIYT 302
Cdd:COG4946 43 LWTVPADGGRARRLTSHPGYESFPRFSPDGKWIAFTSDYDGNTDVYVMPAEGGEPKRLTYHPANDRVVGWTPDGKSVLFA 122
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 303 SDRG----GSAQIYRYDFATGSSKRLTFRGAFNarGTLSADGRKLALV-----------HRpSGSNYKVAIQDINTNI-T 366
Cdd:COG4946 123 SNRGsppsRSNQLYTVPVDGGLPERLPLPPAGD--GSFSPDGKKLAYTrigrefrtwkrYR-GGTAGDIWIYDLGTGEfT 199
|
170
....*....|....*..
gi 651313546 367 NILTPTSLDESPSFSPN 383
Cdd:COG4946 200 RLTDFGGNDRNPMWIGD 216
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
178-344 |
6.65e-14 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 73.92 E-value: 6.65e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 178 TLQIADTDGEQpktiltsrdpILSPAWTPDAKKIAYVSFETKRPAIYVQDLAT-GQREKLASF-RGLNGAPSFSPDGQSM 255
Cdd:COG4946 334 TRNLTNTPGVR----------ERLPAWSPDGKSIAYFSDASGEYELYIAPADGsGEPKQLTLGdLGRVFNPVWSPDGKKI 403
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 256 LFTAsmHGNpEIYQMNLSTRELRRMTnDSAIDTEARYA---PDGKSFIYT-SDRGGSAQIYRYDFATGSSKRLTfRGAFN 331
Cdd:COG4946 404 AFTD--NRG-RLWVVDLASGKVRKVD-TDGYGDGISDLawsPDSKWLAYSkPGPNQLSQIFLYDVETGKTVQLT-DGRYD 478
|
170
....*....|....
gi 651313546 332 ARG-TLSADGRKLA 344
Cdd:COG4946 479 DGSpAFSPDGKYLY 492
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
129-426 |
1.09e-13 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 72.25 E-value: 1.09e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 129 LLSVPASRVRSAAHMISDAIYEALTGIKGDFSGRIAYVLRNP-----ATPEQRYTLQIADTDGEQPKTILTS-RDPILSP 202
Cdd:COG2319 47 DGARLAAGAGDLTLLLLDAAAGALLATLLGHTAAVLSVAFSPdgrllASASADGTVRLWDLATGLLLRTLTGhTGAVRSV 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 203 AWTPDAKKIAYVSFETkrpAIYVQDLATGQRekLASFRGLNGAP---SFSPDGQsMLFTASmhGNPEIYQMNLST-RELR 278
Cdd:COG2319 127 AFSPDGKTLASGSADG---TVRLWDLATGKL--LRTLTGHSGAVtsvAFSPDGK-LLASGS--DDGTVRLWDLATgKLLR 198
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 279 RMTNDSAIDTEARYAPDGKsFIYTSDRGGSAQIyrYDFATGSSKRlTFRG--------AFnargtlSADGRKLAlvhrpS 350
Cdd:COG2319 199 TLTGHTGAVRSVAFSPDGK-LLASGSADGTVRL--WDLATGKLLR-TLTGhsgsvrsvAF------SPDGRLLA-----S 263
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 351 GSNYK-VAIQDINTN--ITNILTPTSLDESPSFSPNGQMVVYATREGArglLSIMSLD-GRFRMNLPSEQGEVREPAWAP 426
Cdd:COG2319 264 GSADGtVRLWDLATGelLRTLTGHSGGVNSVAFSPDGKLLASGSDDGT---VRLWDLAtGKLLRTLTGHTGAVRSVAFSP 340
|
|
| COG4946 |
COG4946 |
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown] ... |
160-357 |
1.26e-13 |
|
Uncharacterized N-terminal domain of tricorn protease, contains WD40 repeats [Function unknown];
Pssm-ID: 443973 [Multi-domain] Cd Length: 1072 Bit Score: 73.15 E-value: 1.26e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 160 SGRIAYVlrnpatpEQRYTLQIADTDGEQPKTILTSR--DPILSPAWTPDAKKIAYVSFETK-RPAIYVQDLATGQREKL 236
Cdd:COG4946 400 GKKIAFT-------DNRGRLWVVDLASGKVRKVDTDGygDGISDLAWSPDSKWLAYSKPGPNqLSQIFLYDVETGKTVQL 472
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 237 ASFRGLNGAPSFSPDGQSMLFTASMHGNP---------------EIYQMNLS--TRELRRMTNDS--------------- 284
Cdd:COG4946 473 TDGRYDDGSPAFSPDGKYLYFLSSRDFNPtygdldfdlafprttRIYAVPLRkdAPSPFAPESDEeaakkeedekkkkkk 552
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 285 -----------AIDTE-------------ARY----APDGKSFIYTSDRGGSAQ--IYRYDFATGSSKRLT-FRGAFnar 333
Cdd:COG4946 553 kddkkkkpkpvKIDFDgiedrivalpvpaGNYsdlaAGKGGVLYLLEPVEGAPGgtLYRYDLEKRKTETLAdGVSSY--- 629
|
250 260
....*....|....*....|....
gi 651313546 334 gTLSADGRKLALVhrpSGSNYKVA 357
Cdd:COG4946 630 -ELSADGKKLLVR---SGGRLRVV 649
|
|
| WD40 |
COG2319 |
WD40 repeat [General function prediction only]; |
184-394 |
8.98e-13 |
|
WD40 repeat [General function prediction only];
Pssm-ID: 441893 [Multi-domain] Cd Length: 403 Bit Score: 69.55 E-value: 8.98e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 184 TDGEQPKTILTSRDPILSPAWTPDAKKIAYVSFETKrpaIYVQDLATGQRekLASFRGLNG---APSFSPDGQsMLFTAS 260
Cdd:COG2319 192 ATGKLLRTLTGHTGAVRSVAFSPDGKLLASGSADGT---VRLWDLATGKL--LRTLTGHSGsvrSVAFSPDGR-LLASGS 265
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 261 MHGNPEIYqmNLSTRE-LRRMTNDSAIDTEARYAPDGKsFIYTSDRGGSAQIyrYDFATGSSKRlTFRGAFNARGTL--S 337
Cdd:COG2319 266 ADGTVRLW--DLATGElLRTLTGHSGGVNSVAFSPDGK-LLASGSDDGTVRL--WDLATGKLLR-TLTGHTGAVRSVafS 339
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 338 ADGRKLAlvhrpSGSNYK-VAIQDINTN--ITNILTPTSLDESPSFSPNGQMVVYATREG 394
Cdd:COG2319 340 PDGKTLA-----SGSDDGtVRLWDLATGelLRTLTGHTGAVTSVAFSPDGRTLASGSADG 394
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
277-313 |
1.32e-08 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 50.21 E-value: 1.32e-08
10 20 30
....*....|....*....|....*....|....*..
gi 651313546 277 LRRMTNDSAIDTEARYAPDGKSFIYTSDRGGSAQIYR 313
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIYV 37
|
|
| TolB |
COG0823 |
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, ... |
300-426 |
3.15e-08 |
|
Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440585 [Multi-domain] Cd Length: 158 Bit Score: 52.75 E-value: 3.15e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 651313546 300 IYTSDRGGSAQIYRYDFATGSSKRLTfrgafnargtlsadgrklalvhrpsgsnykvaiqdintnitnilTPTSLDESPS 379
Cdd:COG0823 2 AFTLSRDGNSDIYVVDLDGGEPRRLT--------------------------------------------NSPGIDTSPA 37
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 651313546 380 FSPNGQMVVYATREGARGLLSIMSLDGRFRMNLPSEQGEVREPAWAP 426
Cdd:COG0823 38 WSPDGRRIAFTSDRGGGPQIYVVDADGGEPRRLTFGGGYNASPSWSP 84
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
233-269 |
2.38e-06 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 44.04 E-value: 2.38e-06
10 20 30
....*....|....*....|....*....|....*..
gi 651313546 233 REKLASFRGLNGAPSFSPDGQSMLFTASMHGNPEIYQ 269
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIYV 37
|
|
| PD40 |
pfam07676 |
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. ... |
189-225 |
7.68e-04 |
|
WD40-like Beta Propeller Repeat; This family appears to be related to the pfam00400 repeat. This repeat corresponds to the RIVW repeat identified in cell surface proteins [Adindla et al. Comparative and Functional Genomics 2004; 5:2-16].
Pssm-ID: 429587 [Multi-domain] Cd Length: 37 Bit Score: 36.73 E-value: 7.68e-04
10 20 30
....*....|....*....|....*....|....*..
gi 651313546 189 PKTILTSRDPILSPAWTPDAKKIAYVSFETKRPAIYV 225
Cdd:pfam07676 1 LGRLTNTPGNETAPSWSPDGKRLAFSSDRDGKPDIYV 37
|
|
| Pectate_lyase22 |
pfam14583 |
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more ... |
221-268 |
1.40e-03 |
|
Oligogalacturonate lyase; This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
Pssm-ID: 434052 [Multi-domain] Cd Length: 386 Bit Score: 40.77 E-value: 1.40e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 651313546 221 PAIYVQDLATGQREKLA----SFRGLNG-------APSFSPDGQSMLFTASMHGNPEIY 268
Cdd:pfam14583 320 PFLYVFNMKNGTQHRVArhdtSWEVFEGdrqvthpHPSFTPDDKQILFTSDVHGKPALY 378
|
|
| |
