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Conserved domains on  [gi|652348937|ref|WP_026745216|]
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OmpA family protein [Leptotrichia hofstadii]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 68-171 7.23e-39

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 128.05  E-value: 7.23e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  68 QLKFDFNSATIKEEYTPALKKLKDYIEA-KNQKISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERiIETKGN 146
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKnPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASR-ITAVGY 81

                         90       100
                 ....*....|....*....|....*
gi 652348937 147 GDANPVATNDTEEGRAANRRIEIQF 171
Cdd:cd07185   82 GESRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 68-171 7.23e-39

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 128.05  E-value: 7.23e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  68 QLKFDFNSATIKEEYTPALKKLKDYIEA-KNQKISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERiIETKGN 146
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKnPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASR-ITAVGY 81

                         90       100
                 ....*....|....*....|....*
gi 652348937 147 GDANPVATNDTEEGRAANRRIEIQF 171
Cdd:cd07185   82 GESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 60-171 4.98e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 124.12  E-value: 4.98e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  60 DVVVLDANQLKFDFNSATIKEEYTPALKKLKDYIEA-KNQKISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPE 138
Cdd:COG2885  180 VAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEnPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPAS 259

                         90       100       110
                 ....*....|....*....|....*....|...
gi 652348937 139 RiIETKGNGDANPVATNDTEEGRAANRRIEIQF 171
Cdd:COG2885  260 R-ITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 71-164 4.45e-24

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 90.11  E-value: 4.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937   71 FDFNSATIKEEYTPALKKLKDYIEAKNQK--ISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERIIeTKGNGD 148
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRIS-VVGYGA 79

                          90
                  ....*....|....*.
gi 652348937  149 ANPVATNDTEEGRAAN 164
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 55-169 7.31e-24

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 90.82  E-value: 7.31e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937   55 ESADSDVVVLdANQLKFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKG--TREY--NRELSLRRAESLEeKL 130
Cdd:TIGR03350  19 EDGDRSVVRL-RGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPirTARFpsNWHLSEARAKAVA-DV 96

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 652348937  131 IDLGLSPERIIETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:TIGR03350  97 LAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEI 135
PRK10510 PRK10510
OmpA family lipoprotein;
30-169 3.44e-22

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 88.78  E-value: 3.44e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  30 LRDNaMRSTAIEVegselgeleatkeSADSDVVVLD-ANQLKFDFNSATIKEEYTPALKK----LKDYieaKNQKISIIG 104
Cdd:PRK10510  88 LRDK-MRGTGVSV-------------TRSGDNIILNmPNNVTFDSSSATLKPAGANTLTGvamvLKEY---PKTAVNVVG 150

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 652348937 105 YTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERIiETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK10510 151 YTDSTGSHDLNMRLSQQRADSVASALITQGVDASRI-RTQGMGPANPIASNSTAEGKAQNRRVEI 214
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 68-171 7.23e-39

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 128.05  E-value: 7.23e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  68 QLKFDFNSATIKEEYTPALKKLKDYIEA-KNQKISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERiIETKGN 146
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKnPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASR-ITAVGY 81

                         90       100
                 ....*....|....*....|....*
gi 652348937 147 GDANPVATNDTEEGRAANRRIEIQF 171
Cdd:cd07185   82 GESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 60-171 4.98e-35

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 124.12  E-value: 4.98e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  60 DVVVLDANQLKFDFNSATIKEEYTPALKKLKDYIEA-KNQKISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPE 138
Cdd:COG2885  180 VAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKEnPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPAS 259

                         90       100       110
                 ....*....|....*....|....*....|...
gi 652348937 139 RiIETKGNGDANPVATNDTEEGRAANRRIEIQF 171
Cdd:COG2885  260 R-ITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
MotB COG1360
Flagellar motor protein MotB [Cell motility];
7-172 1.61e-25

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 96.07  E-value: 1.61e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937   7 ITAMLSVLLVsapttakkittsnlrdnaMRSTAIEVEGSELGELEATKESADSDVVVLDANQLkFDFNSATIKEEYTPAL 86
Cdd:COG1360   18 MTLLLAFFVL------------------LWALSSALEENLLSGQVEVRITEEGLVIEIQDRVL-FDSGSAELTPEGRELL 78

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  87 KKLKDYIEAKNQKISIIGYTDSK--GTREY--NRELSLRRAESLEEKLIDLGLSPERIIETkGNGDANPVATNDTEEGRA 162
Cdd:COG1360   79 DKIAAVLAEVPNRIRVEGHTDNVpiSTARFpsNWELSAARAAAVVRYLIEGGVPPERLSAV-GYGDTRPLAPNDTPEGRA 157

                        170
                 ....*....|
gi 652348937 163 ANRRIEIQFM 172
Cdd:COG1360  158 RNRRVEIVIL 167
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 71-164 4.45e-24

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 90.11  E-value: 4.45e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937   71 FDFNSATIKEEYTPALKKLKDYIEAKNQK--ISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERIIeTKGNGD 148
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELKntITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRIS-VVGYGA 79

                          90
                  ....*....|....*.
gi 652348937  149 ANPVATNDTEEGRAAN 164
Cdd:pfam00691  80 TKPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 55-169 7.31e-24

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 90.82  E-value: 7.31e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937   55 ESADSDVVVLdANQLKFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKG--TREY--NRELSLRRAESLEeKL 130
Cdd:TIGR03350  19 EDGDRSVVRL-RGDELFASGSAEVRAEFEPLLLRIAKALAAVPGRITVVGHTDNVPirTARFpsNWHLSEARAKAVA-DV 96

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 652348937  131 IDLGLSPERIIETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:TIGR03350  97 LAQAGGPAGRVRAEGRGDSEPIASNATAAGRARNRRVEI 135
PRK10510 PRK10510
OmpA family lipoprotein;
30-169 3.44e-22

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 88.78  E-value: 3.44e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  30 LRDNaMRSTAIEVegselgeleatkeSADSDVVVLD-ANQLKFDFNSATIKEEYTPALKK----LKDYieaKNQKISIIG 104
Cdd:PRK10510  88 LRDK-MRGTGVSV-------------TRSGDNIILNmPNNVTFDSSSATLKPAGANTLTGvamvLKEY---PKTAVNVVG 150

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 652348937 105 YTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERIiETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK10510 151 YTDSTGSHDLNMRLSQQRADSVASALITQGVDASRI-RTQGMGPANPIASNSTAEGKAQNRRVEI 214
PRK07033 PRK07033
DotU family type VI secretion system protein;
50-172 1.59e-21

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 89.72  E-value: 1.59e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  50 LEATKESADSDVVVLDANQLkFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKGTREY----NRELSLRRAES 125
Cdd:PRK07033 298 LVAVRDEADRSVVTLRGDGL-FASASTSVRDRYQPVLARVADALNQVKGNVLVTGYSDNVPIRTArfpsNWELSQARAQA 376

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 652348937 126 LEEKLIDLGLSPERIiETKGNGDANPVATNDTEEGRAANRRIEIQFM 172
Cdd:PRK07033 377 VRALLAARLGQPERV-TAEGRGDSDPVAPNDSAENRARNRRVEITLL 422
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 71-169 1.46e-20

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 81.07  E-value: 1.46e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937   71 FDFNSATIKEEYTPALKKLKDYIEA-KNQKISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERiIETKGNGDA 149
Cdd:TIGR02802   4 FDFDSSDLKSEAQATLDAHAQYLKKnPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQ-IETVSYGKE 82

                          90       100
                  ....*....|....*....|
gi 652348937  150 NPVATNDTEEGRAANRRIEI 169
Cdd:TIGR02802  83 KPAALGHDEAAWAKNRRAVL 102
PRK10808 PRK10808
outer membrane protein A; Reviewed
 59-170 1.83e-15

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 72.42  E-value: 1.83e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  59 SDVVvldanqlkFDFNSATIKEEYTPALKKLKDYIEAKNQK---ISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGL 135
Cdd:PRK10808 224 SDVL--------FNFNKATLKPEGQQALDQLYSQLSNLDPKdgsVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGI 295

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....
gi 652348937 136 sPERIIETKGNGDANPVATN--DTEEGRAA-------NRRIEIQ 170
Cdd:PRK10808 296 -PADKISARGMGKSNPVTGNtcDNVKPRAAlidclapDRRVEIE 338
PRK09040 PRK09040
hypothetical protein; Provisional
 71-169 1.01e-13

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 66.19  E-value: 1.01e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEYTPALKKL----KDYIEAKNQKISIIGYTDSKGTREYNR------ELSLRRAESLEEKLIDLGLSPERI 140
Cdd:PRK09040  92 FALNSDQLQPEGRELLKSLagplAAYLRARDEILMVSGFTDDQPVRAGNRrfadnwELSAQRALTVTRALIDAGVPASSV 171

                         90       100
                 ....*....|....*....|....*....
gi 652348937 141 IeTKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK09040 172 F-AAAFGSEQPVASNADDEGRAKNRRVEI 199
PRK08126 PRK08126
hypothetical protein; Provisional
 76-169 1.41e-13

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 67.41  E-value: 1.41e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  76 ATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSK--GTREY--NRELSLRRAESLEEKLIDLGLSPERIiETKGNGDANP 151
Cdd:PRK08126 332 ATVNPAMGPLIAKIAREIARVGGKVTVTGHTDNQpiRSAQFasNLVLSEKRAAQVAQMLQSAGVPASRL-EAVGKGDAQP 410

                         90
                 ....*....|....*...
gi 652348937 152 VATNDTEEGRAANRRIEI 169
Cdd:PRK08126 411 VADNRTPQGRAQNRRVEI 428
motB PRK08944
flagellar motor protein MotB; Reviewed
 75-172 4.38e-12

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 62.72  E-value: 4.38e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  75 SATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKGTR--EY--NRELSLRRAESLEEKLI-DLGLSPERIIeTKGNGDA 149
Cdd:PRK08944 187 SAFLQPKFKPVVRKIGELLKDVPGIITVSGHTDNVPISseLYrsNWDLSSARAVAVAHELLkVKGFDPQRLK-VVGMADT 265

                         90       100
                 ....*....|....*....|...
gi 652348937 150 NPVATNDTEEGRAANRRIEIQFM 172
Cdd:PRK08944 266 QPLVPNDTAENRARNRRVEIIIE 288
motB PRK06667
flagellar motor protein MotB; Validated
 71-169 6.49e-12

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 61.73  E-value: 6.49e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIK-EEYTPALKKLKDYI---EAKNQKISIIGYTDSKGT---REY--NRELSLRRAESLEEKLIDLGLSPERII 141
Cdd:PRK06667 129 FYPGSAEVKlEENRETLQKIASFIgflDLAGRNFRIEGHTDNVDVnpeGPWksNWELSGARAVNMLEYILNYGDQSESWF 208

                         90       100
                 ....*....|....*....|....*...
gi 652348937 142 ETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK06667 209 QVSGFAGSRPLATEDTPEGRAYNRRIDI 236
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 40-169 7.91e-12

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 61.57  E-value: 7.91e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  40 IEVEGSELG-ELEatkesadsdvvvLDANQLkFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSK--GTREY-- 114
Cdd:PRK09038 118 VTVRRNELWiEIE------------INSSLL-FGSGDAMLSDQAFAILEKVAEVLKPAPNPIHVEGFTDNVpiATAQFps 184

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 652348937 115 NRELSLRRAESLEEKLIDLGLSPERIIETkGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK09038 185 NWELSAARAASVVRLLADDGVAPSRLAAV-GYGEFQPVADNDTAEGRARNRRVVL 238
PRK09039 PRK09039
peptidoglycan -binding protein;
71-171 1.97e-11

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 61.14  E-value: 1.97e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEYTPALKKLKDYIEAKNQKIS-----II---GYTDSK---GTREY--NRELSLRRAESLEEKLIDLGLSP 137
Cdd:PRK09039 228 FPTGSAELNPEGQAEIAKLAAALIELAKEIPpeinwVLrvdGHTDNVplsGTGRFrdNWELSSARAISVVKFLIALGVPA 307

                         90       100       110
                 ....*....|....*....|....*....|....
gi 652348937 138 ERIIETkGNGDANPVATNDTEEGRAANRRIEIQF 171
Cdd:PRK09039 308 DRLAAA-GFGEFQPLDPGDTPEARARNRRIELKL 340
PRK09967 PRK09967
OmpA family protein;
71-169 2.43e-11

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 58.84  E-value: 2.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEYTPALKKLKDYIEAKNQKISII-GYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERIIETKGNGDA 149
Cdd:PRK09967  56 FAKNDYKLLPESQQQIQTMAAKLASTGLTHARMdGHTDNYGEDSYNEGLSLKRANVVADAWAMGGQIPRSNLTTQGLGKK 135

                         90       100
                 ....*....|....*....|
gi 652348937 150 NPVATNDTEEGRAANRRIEI 169
Cdd:PRK09967 136 YPIASNKTAQGRAENRRVAV 155
motB PRK07734
flagellar motor protein MotB; Reviewed
 71-169 6.57e-10

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 56.29  E-value: 6.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEYTPALKKLKDY-IEAKNQKISIIGYTDSKGTR----EYNRELSLRRAES-----LEEKLIDlglspERI 140
Cdd:PRK07734 146 FDSGKADVRLEDLPLAKEISNLlVSNPPRNITISGHTDNVPIAnaqfASNWELSVMRAVNfmqvlLENKELD-----PEK 220

                         90       100
                 ....*....|....*....|....*....
gi 652348937 141 IETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK07734 221 FSAKGYGEYKPIASNDTAEGRAKNRRVEV 249
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 16-169 1.03e-09

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 55.45  E-value: 1.03e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  16 VSAPTTAKKITTSNLRDNAMRSTAIEVEGSELGELEATKESADSDVVVLDanQLKFDFNSATIKEEYTPALKKLKDYIEA 95
Cdd:PRK06742  66 ISHEKNDEKMISKKRMDELYKKLKAYVDNNGISQVNVYREDTGVSVVIVD--NLIFDTGDANVKPEAKEIISQLVGFFQS 143

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 652348937  96 KNQKISIIGYTDSKGTRE----YNRELSLRRAESLEEKLIDLGLSPERIIETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK06742 144 VPNPIVVEGHTDSRPIHNdkfpSNWELSSARAANMIHHLIEVYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVI 221
motB PRK08457
flagellar motor protein MotB; Reviewed
 86-171 1.40e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 55.11  E-value: 1.40e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  86 LKKLKDYIEA--KNQKISIIGYTD------SKGTREYnrELSLRRAESLEEKLIDLGLSPERIIETkGNGDANPVATNDT 157
Cdd:PRK08457 142 LKRIAKIITKlpKQVKINVRGYTDnsplnkSRYKDHY--ELAAARAYNVMKVLIQYGINPNRLSFS-SYGSNNPIAPNDS 218

                         90
                 ....*....|....
gi 652348937 158 EEGRAANRRIEIQF 171
Cdd:PRK08457 219 LENRLKNNRVEIFF 232
PRK06925 PRK06925
flagellar motor protein MotB;
42-169 5.73e-09

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 53.23  E-value: 5.73e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  42 VEGSELGELEATKESaDSDVVVLDANQLKFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKGTREY----NRE 117
Cdd:PRK06925  94 IEENELKSVITAKRD-ERGVVLVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIPNDIKVEGHTDSRPISTYrypsNWE 172

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|...
gi 652348937 118 LSLRRAESLEEKLID-LGLSPERIIETkGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK06925 173 LSAARASSVIRYFTSkEKLDSSRFIAV-GYADTKPVVPNTTEENMQENRRVEI 224
PRK07034 PRK07034
hypothetical protein; Provisional
 71-169 2.57e-08

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 52.10  E-value: 2.57e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEY--TPALKKLKDYIEAKNQKISIIGYTDSKGTREY----NRELSLRRAESLEEKL---IDLGLSPERII 141
Cdd:PRK07034 398 FRTGEATLSEEFinKKNIERLGLALAPWPGDIEVIGHTDNKPFRSTsgnnNLKLSAARASVVADKLresTQINETHQREI 477

                         90       100
                 ....*....|....*....|....*...
gi 652348937 142 ETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK07034 478 SAIGRGESDPLADNATEEGRKRNRRVDI 505
PRK14693 PRK14693
hypothetical protein; Provisional
 71-169 1.05e-06

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 47.45  E-value: 1.05e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKGTR--EY--NRELSLRRAESLEEKLIDLGL-----SPE--- 138
Cdd:PRK14693 376 FDVGKANVRADFMHNIERLGLAFAPWPGDLEVIGHTDSRPIRtsEFpdNQALSEARARNVADELRKTALpggarAPEnav 455

                         90       100       110
                 ....*....|....*....|....*....|..
gi 652348937 139 -RIIETKGNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK14693 456 qRNIEYSGRGDAQPIDTAKTAAAYERNRRVDV 487
motB PRK05996
MotB family protein;
71-169 7.40e-06

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 45.07  E-value: 7.40e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDS---KGTREYNRELSLRRAESLEEKLIDLGLSPERIIETKGNG 147
Cdd:PRK05996 318 FAIGSAVPRAELVLAMEKIGQLLAERPGAVIIRGHTDArpfKSATYDNWRLSTARAQSAYYMLVRGGLDEKRIEQVEGFA 397

                         90       100
                 ....*....|....*....|..
gi 652348937 148 DANPVATNDTEEgrAANRRIEI 169
Cdd:PRK05996 398 DRRPKLPNDPNA--AANRRIEI 417
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
10-166 1.25e-05

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 43.32  E-value: 1.25e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  10 MLSVLLVSAPTTAKKITTSNLRDNAMRSTAIEVEGSELGELEATKESADSDVVVLDANQLK------FDFNSATIKEEYT 83
Cdd:PRK10802   6 VLKGLMLALPVMAIAACSSNKNASNDQSEGMLGAGTGMDANGGNGNMSSEEQARLQMQQLQqnnivyFDLDKYDIRSDFA 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  84 PALKKLKDYIEAK-NQKISIIGYTDSKGTREYNRELSLRRAESLEEKLIDLGLSPERiIETKGNGDANPVATNDTEEGRA 162
Cdd:PRK10802  86 QMLDAHANFLRSNpSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQ-ISIVSYGKEKPAVLGHDEAAYA 164


                 ....
gi 652348937 163 ANRR 166
Cdd:PRK10802 165 KNRR 168
motB PRK09041
motility protein MotB;
71-169 1.46e-04

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 41.08  E-value: 1.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  71 FDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSK----GTREY-NRELSLRRAESLEEKLIDLGLSPERIIETKG 145
Cdd:PRK09041 165 FATGSAEVEPYMRDILREIAPVLNDVPNRISLSGHTDATpyanGEKGYsNWELSADRANASRRELVAGGMDEGKVLRVVG 244

                         90       100
                 ....*....|....*....|....
gi 652348937 146 NGDANPVATNDTEEgrAANRRIEI 169
Cdd:PRK09041 245 LASTMLLDKKDPLN--PVNRRISI 266
PRK06778 PRK06778
hypothetical protein; Validated
 65-169 1.22e-03

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 38.37  E-value: 1.22e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  65 DANQLKFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTDSKGTRE--YNR-ELSLRRAESLEEKLIDLGLSPERII 141
Cdd:PRK06778 150 DQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNniYNNwNLSGDRALSARRVLEEAGMPEDKVM 229

                         90       100
                 ....*....|....*....|....*...
gi 652348937 142 ETkgNGDANPVATNDTEEGRAANRRIEI 169
Cdd:PRK06778 230 QV--SAMADQMLLDAKNPQSAGNRRIEI 255
motB PRK12799
flagellar motor protein MotB; Reviewed
 67-169 6.31e-03

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 36.23  E-value: 6.31e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 652348937  67 NQLKFDFNSATIKEEYTPALKKLKDYIEAKNQKISIIGYTD----SKGTREY-NRELSLRRAESLEEKLIDLGLSPERII 141
Cdd:PRK12799 156 NRPMFKMGSAQVEPYMRDILRAIAPILNDIPNKLSLSGHTDdlpyARGERGYsNWELSADRANASRRELLAGGLDEGKIL 235

                         90       100
                 ....*....|....*....|....*...
gi 652348937 142 ETKGNGDANPVATNDTEEgrAANRRIEI 169
Cdd:PRK12799 236 RVVGMASTMRLKEQASDD--PVNRRISI 261
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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