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Conserved domains on  [gi|653808151|ref|WP_027690285|]
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MULTISPECIES: cytochrome-c oxidase, cbb3-type subunit II [Rhizobium]

Protein Classification

cbb3-type cytochrome c oxidase subunit II( domain architecture ID 10006836)

cbb3-type cytochrome c oxidase subunit II is the monoheme subunit of the cbb3-type cytochrome oxidase that also contains CcoN (subunit I, with copper and two heme groups), CcoP (subunit III, with two hemes), and CcoQ (essential for incorporation of the prosthetic groups)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
CcoO COG2993
Cbb3-type cytochrome oxidase, cytochrome c subunit FixO [Energy production and conversion];
4-240 5.68e-149

Cbb3-type cytochrome oxidase, cytochrome c subunit FixO [Energy production and conversion];


:

Pssm-ID: 442232  Cd Length: 227  Bit Score: 414.22  E-value: 5.68e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   4 ILDKHQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDE 83
Cdd:COG2993    1 GEMWHEKLERNPGLLTVLTLLAVSIGGLVEIVPLFFIKSTIEPVEGVKPYTPLELAGRDIYIREGCYNCHSQMIRPFRDE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151  84 VERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKA 163
Cdd:COG2993   81 VERYGHYSLAGESVYDHPFQWGSKRTGPDLARVGGKYSDEWHRAHLIDPRSVVPESIMPAYPWLAENKLDGEDIAAKMRA 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 653808151 164 NEDVGVPYNDDMLANAEADMMAQADPNADTTAllarypkaktgDFDGDPAALTEMDALVSYLQMLGTLVDFSTYDDA 240
Cdd:COG2993  161 LRTLGVPYTDEDIANAPADLKGQADPIADDLK-----------DFDGEPPEDTEMDALIAYLQRLGTDVKFATADAA 226
 
Name Accession Description Interval E-value
CcoO COG2993
Cbb3-type cytochrome oxidase, cytochrome c subunit FixO [Energy production and conversion];
4-240 5.68e-149

Cbb3-type cytochrome oxidase, cytochrome c subunit FixO [Energy production and conversion];


Pssm-ID: 442232  Cd Length: 227  Bit Score: 414.22  E-value: 5.68e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   4 ILDKHQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDE 83
Cdd:COG2993    1 GEMWHEKLERNPGLLTVLTLLAVSIGGLVEIVPLFFIKSTIEPVEGVKPYTPLELAGRDIYIREGCYNCHSQMIRPFRDE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151  84 VERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKA 163
Cdd:COG2993   81 VERYGHYSLAGESVYDHPFQWGSKRTGPDLARVGGKYSDEWHRAHLIDPRSVVPESIMPAYPWLAENKLDGEDIAAKMRA 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 653808151 164 NEDVGVPYNDDMLANAEADMMAQADPNADTTAllarypkaktgDFDGDPAALTEMDALVSYLQMLGTLVDFSTYDDA 240
Cdd:COG2993  161 LRTLGVPYTDEDIANAPADLKGQADPIADDLK-----------DFDGEPPEDTEMDALIAYLQRLGTDVKFATADAA 226
ccoO TIGR00781
cytochrome c oxidase, cbb3-type, subunit II; This model describes the monoheme subunit of the ...
8-240 3.52e-145

cytochrome c oxidase, cbb3-type, subunit II; This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups). [Energy metabolism, Electron transport]


Pssm-ID: 129863  Cd Length: 232  Bit Score: 405.07  E-value: 3.52e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151    8 HQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVERY 87
Cdd:TIGR00781   1 HQFLEKNATLLLVFFLLVVSIGGLVEIAPLFFLSNTIEPVEGLRPYTPLELAGRDIYIREGCYHCHSQMIRPFRAEVERY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   88 GHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKANEDV 167
Cdd:TIGR00781  81 GHYSLAGESMYDHPFQWGSKRTGPDLARVGGRYSDEWHVKHLFDPRSVVPESIMPAYKHLATKKVDVDTAYAEAKTQKKV 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 653808151  168 GVPYNDDMLANAEADMMAQADPNADTTALLARY-PKAKTGDFDGDPaaLTEMDALVSYLQMLGTLVDFSTYDDA 240
Cdd:TIGR00781 161 GVPYDDEMIAKAGADEEAQKDPNADAKKLTADYkDKRVLEAFDGGP--LTEMDALVAYLQSLGTSVDNSTQNAK 232
PRK14487 PRK14487
cbb3-type cytochrome c oxidase subunit II; Provisional
7-239 5.73e-144

cbb3-type cytochrome c oxidase subunit II; Provisional


Pssm-ID: 237725  Cd Length: 217  Bit Score: 401.16  E-value: 5.73e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   7 KHQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVER 86
Cdd:PRK14487   1 KHEILEKNPGLLAVLTLLVVSIGGLVEIVPLFFQKSTTEPVEGVRPYTALELAGRDIYIREGCYNCHSQMIRPFRAETER 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151  87 YGHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKANED 166
Cdd:PRK14487  81 YGHYSLAGESVYDHPFLWGSKRTGPDLARVGGRYSDEWHRNHLINPRSVVPESNMPAYPWLAENDLDGTDTAEKMTALRV 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 653808151 167 VGVPYNDDMLANAEADMMAQADPNADttallarypkaktgdfDGDPAALTEMDALVSYLQMLGTLVDFSTYDD 239
Cdd:PRK14487 161 VGVPYTDEDIAGAKAAVKGKADPIAD----------------DGDPGEITEMDALIAYLQSLGTAVKFKRYDA 217
FixO pfam02433
Cytochrome C oxidase, mono-heme subunit/FixO; The bacterial oxidase complex, fixNOPQ or ...
8-232 2.07e-136

Cytochrome C oxidase, mono-heme subunit/FixO; The bacterial oxidase complex, fixNOPQ or cytochrome cbb3, is thought to be required for respiration in endosymbiosis. FixO is a membrane bound mono-heme constituent of the fixNOPQ complex.


Pssm-ID: 460556  Cd Length: 218  Bit Score: 382.27  E-value: 2.07e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151    8 HQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVERY 87
Cdd:pfam02433   1 HRWLERNPFLFTVLTLIVIAIGGLVEIVPLFLIKSNIETIEGVKPYTPLELAGRDIYIREGCYNCHSQMIRPFRDEVERY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   88 GHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKANEDV 167
Cdd:pfam02433  81 GHYSLAGESVYDHPFLWGSKRTGPDLARVGGKYSDDWHYNHMLDPRSVVPGSIMPAYPWLFENKLDTSTIPAKLKALRTL 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 653808151  168 GVPYNDDMLANAEADMMAQADPNAD---TTALLARYpkaktgdfdgDPAALTEMDALVSYLQMLGTLV 232
Cdd:pfam02433 161 GVPYTDEMIANAKADLLAQAKPIADdlkADGVKARY----------EPGADTEIVALIAYLQRLGTDI 218
 
Name Accession Description Interval E-value
CcoO COG2993
Cbb3-type cytochrome oxidase, cytochrome c subunit FixO [Energy production and conversion];
4-240 5.68e-149

Cbb3-type cytochrome oxidase, cytochrome c subunit FixO [Energy production and conversion];


Pssm-ID: 442232  Cd Length: 227  Bit Score: 414.22  E-value: 5.68e-149
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   4 ILDKHQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDE 83
Cdd:COG2993    1 GEMWHEKLERNPGLLTVLTLLAVSIGGLVEIVPLFFIKSTIEPVEGVKPYTPLELAGRDIYIREGCYNCHSQMIRPFRDE 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151  84 VERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKA 163
Cdd:COG2993   81 VERYGHYSLAGESVYDHPFQWGSKRTGPDLARVGGKYSDEWHRAHLIDPRSVVPESIMPAYPWLAENKLDGEDIAAKMRA 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 653808151 164 NEDVGVPYNDDMLANAEADMMAQADPNADTTAllarypkaktgDFDGDPAALTEMDALVSYLQMLGTLVDFSTYDDA 240
Cdd:COG2993  161 LRTLGVPYTDEDIANAPADLKGQADPIADDLK-----------DFDGEPPEDTEMDALIAYLQRLGTDVKFATADAA 226
ccoO TIGR00781
cytochrome c oxidase, cbb3-type, subunit II; This model describes the monoheme subunit of the ...
8-240 3.52e-145

cytochrome c oxidase, cbb3-type, subunit II; This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups). [Energy metabolism, Electron transport]


Pssm-ID: 129863  Cd Length: 232  Bit Score: 405.07  E-value: 3.52e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151    8 HQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVERY 87
Cdd:TIGR00781   1 HQFLEKNATLLLVFFLLVVSIGGLVEIAPLFFLSNTIEPVEGLRPYTPLELAGRDIYIREGCYHCHSQMIRPFRAEVERY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   88 GHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKANEDV 167
Cdd:TIGR00781  81 GHYSLAGESMYDHPFQWGSKRTGPDLARVGGRYSDEWHVKHLFDPRSVVPESIMPAYKHLATKKVDVDTAYAEAKTQKKV 160
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 653808151  168 GVPYNDDMLANAEADMMAQADPNADTTALLARY-PKAKTGDFDGDPaaLTEMDALVSYLQMLGTLVDFSTYDDA 240
Cdd:TIGR00781 161 GVPYDDEMIAKAGADEEAQKDPNADAKKLTADYkDKRVLEAFDGGP--LTEMDALVAYLQSLGTSVDNSTQNAK 232
PRK14487 PRK14487
cbb3-type cytochrome c oxidase subunit II; Provisional
7-239 5.73e-144

cbb3-type cytochrome c oxidase subunit II; Provisional


Pssm-ID: 237725  Cd Length: 217  Bit Score: 401.16  E-value: 5.73e-144
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   7 KHQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVER 86
Cdd:PRK14487   1 KHEILEKNPGLLAVLTLLVVSIGGLVEIVPLFFQKSTTEPVEGVRPYTALELAGRDIYIREGCYNCHSQMIRPFRAETER 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151  87 YGHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKANED 166
Cdd:PRK14487  81 YGHYSLAGESVYDHPFLWGSKRTGPDLARVGGRYSDEWHRNHLINPRSVVPESNMPAYPWLAENDLDGTDTAEKMTALRV 160
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 653808151 167 VGVPYNDDMLANAEADMMAQADPNADttallarypkaktgdfDGDPAALTEMDALVSYLQMLGTLVDFSTYDD 239
Cdd:PRK14487 161 VGVPYTDEDIAGAKAAVKGKADPIAD----------------DGDPGEITEMDALIAYLQSLGTAVKFKRYDA 217
FixO pfam02433
Cytochrome C oxidase, mono-heme subunit/FixO; The bacterial oxidase complex, fixNOPQ or ...
8-232 2.07e-136

Cytochrome C oxidase, mono-heme subunit/FixO; The bacterial oxidase complex, fixNOPQ or cytochrome cbb3, is thought to be required for respiration in endosymbiosis. FixO is a membrane bound mono-heme constituent of the fixNOPQ complex.


Pssm-ID: 460556  Cd Length: 218  Bit Score: 382.27  E-value: 2.07e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151    8 HQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVERY 87
Cdd:pfam02433   1 HRWLERNPFLFTVLTLIVIAIGGLVEIVPLFLIKSNIETIEGVKPYTPLELAGRDIYIREGCYNCHSQMIRPFRDEVERY 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   88 GHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKANEDV 167
Cdd:pfam02433  81 GHYSLAGESVYDHPFLWGSKRTGPDLARVGGKYSDDWHYNHMLDPRSVVPGSIMPAYPWLFENKLDTSTIPAKLKALRTL 160
                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 653808151  168 GVPYNDDMLANAEADMMAQADPNAD---TTALLARYpkaktgdfdgDPAALTEMDALVSYLQMLGTLV 232
Cdd:pfam02433 161 GVPYTDEMIANAKADLLAQAKPIADdlkADGVKARY----------EPGADTEIVALIAYLQRLGTDI 218
PRK14485 PRK14485
putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
8-230 1.74e-80

putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional


Pssm-ID: 184703 [Multi-domain]  Cd Length: 712  Bit Score: 255.00  E-value: 1.74e-80
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151   8 HQILEKNATLLLVGSLLVVSIGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVERY 87
Cdd:PRK14485 488 HRWLERKPIQLTVLTTIAILIGGMVEIIPTFLVKSNVPTIASVKPYTPLELEGRDLYIREGCYNCHSQMIRPFRSEVERY 567
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151  88 GHYSLAAESMYDHPFQWGSKRTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKANEDV 167
Cdd:PRK14485 568 GEYSKAGEFVYDHPFLWGSKRTGPDLAREGGKYPDSWHYNHMEDPQSTSPGSIMPAYPWLLENELDISDTPAKIKAMQTL 647
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 653808151 168 GVPYNDDMLANAEADMMAQADPNADttALLARYPKaktgdfdgdPAALTEMDALVSYLQMLGT 230
Cdd:PRK14485 648 GVPYTDGYEENAQADLREQAEAIAA--DLAADGFK---------VAPDKEIVALIAYLQRLGT 699
PRK14486 PRK14486
putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
28-233 3.35e-66

putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional


Pssm-ID: 184704 [Multi-domain]  Cd Length: 294  Bit Score: 206.98  E-value: 3.35e-66
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151  28 IGGIVEIAPLFYLQNTIEKVEGMRPYTPLELAGRNIYIREGCYLCHSQMIRPFRDEVERYGHYSLAAESMYDHPFQWGSK 107
Cdd:PRK14486  22 AGTIATMAYPMFRNDMHPKVEGLKPYTPLELAGRDVYQREGCVNCHTQTVRPLKSEVVRYGQYSKAGEFAYDHPFLWGSK 101
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 653808151 108 RTGPDLARVGARYSNEWHVQHLADPRAVVPESIMPSYAFLKERRVTVKDVGMDLKAnedVGVPYNDdmlanaeadmmaqa 187
Cdd:PRK14486 102 RTGPDLARIGGKYPDAWHYAHFEDPQAVVPRSNMPAYAFLKGKPLDAALTQRKMRA---LGFPYTD-------------- 164
                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 653808151 188 dpnADTTALlarypkaktgdfdgdpAALTEMDALVSYLQMLGTLVD 233
Cdd:PRK14486 165 ---ADLAAL----------------AGKTEMDAMVAYMQSLGKAIP 191
thiosulf_SoxX TIGR04485
sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome ...
69-146 7.85e-07

sulfur oxidation c-type cytochrome SoxX; Members of this family are SoxX, a c-type cytochrome with a CxxCH motif, part of a heterodimer with SoxA. SoxXA, SoxYZ, and SoxB contribute to thiosulfate oxidation to sulfate.


Pssm-ID: 275278 [Multi-domain]  Cd Length: 78  Bit Score: 45.65  E-value: 7.85e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 653808151   69 CYLCHSqmirpFRDEVERYGHYslaaesmydhpfqwgskrtGPDLARVGARYSNE-WHVQHLADPRAVVPESIMPSYAF 146
Cdd:TIGR04485   5 CLACHQ-----IPGSEVFPGNI-------------------GPSLTGYGARYPDEaYLRAKIADAKAVNPCTVMPRFGK 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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