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Conserved domains on  [gi|654059630|ref|WP_027705582|]
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type B 50S ribosomal protein L36 [Zymobacter palmae]

Protein Classification

ribosomal protein bL36( domain architecture ID 10011540)

ribosomal protein bL36 is a component of the large ribosomal subunit 50S

Gene Ontology:  GO:0003735|GO:0006412
PubMed:  24524803

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-41 2.28e-16

50S ribosomal protein L36; Validated


:

Pssm-ID: 179138  Cd Length: 41  Bit Score: 64.24  E-value: 2.28e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 654059630  1 MQYLSSLKSAKKRHPDCQIVRRRGRVFVICKSNPRFKAVQG 41
Cdd:PRK00831  1 MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG 41
 
Name Accession Description Interval E-value
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-41 2.28e-16

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 64.24  E-value: 2.28e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 654059630  1 MQYLSSLKSAKKRHPDCQIVRRRGRVFVICKSNPRFKAVQG 41
Cdd:PRK00831  1 MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG 41
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-41 7.29e-11

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 50.12  E-value: 7.29e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 654059630  1 MQYLSSLKSAKkrhPDCQIVRRRGRVFVICKSNPRFKAVQG 41
Cdd:COG0257   1 MKVRASVKKIC---RDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
9-41 1.63e-09

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 46.74  E-value: 1.63e-09
                         10        20        30
                 ....*....|....*....|....*....|...
gi 654059630   9 SAKKRHPDCQIVRRRGRVFVICKSNPRFKAVQG 41
Cdd:pfam00444  6 SLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Name Accession Description Interval E-value
rpmJ PRK00831
50S ribosomal protein L36; Validated
 1-41 2.28e-16

50S ribosomal protein L36; Validated


Pssm-ID: 179138  Cd Length: 41  Bit Score: 64.24  E-value: 2.28e-16
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 654059630  1 MQYLSSLKSAKKRHPDCQIVRRRGRVFVICKSNPRFKAVQG 41
Cdd:PRK00831  1 MKVRNSLKSLKNRHRDCQVVRRKGRVYVINKKNPRFKARQG 41
RpmJ COG0257
Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 ...
 1-41 7.29e-11

Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Ribosomal protein L36 is part of the Pathway/BioSystem: Ribosome 50S subunit


Pssm-ID: 440027  Cd Length: 38  Bit Score: 50.12  E-value: 7.29e-11
                        10        20        30        40
                ....*....|....*....|....*....|....*....|.
gi 654059630  1 MQYLSSLKSAKkrhPDCQIVRRRGRVFVICKSNPRFKAVQG 41
Cdd:COG0257   1 MKVRASVKKIC---RDCKVVRRKGRVYVICKKNPRHKQRQG 38
Ribosomal_L36 pfam00444
Ribosomal protein L36;
9-41 1.63e-09

Ribosomal protein L36;


Pssm-ID: 459811  Cd Length: 38  Bit Score: 46.74  E-value: 1.63e-09
                         10        20        30
                 ....*....|....*....|....*....|...
gi 654059630   9 SAKKRHPDCQIVRRRGRVFVICKSNPRFKAVQG 41
Cdd:pfam00444  6 SLKKRCEDCKVVRRKGRVYVICKKNPRHKQRQG 38
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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