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Conserved domains on  [gi|654544545|ref|WP_028012253|]
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MULTISPECIES: RamA family antibiotic efflux transcriptional regulator [Enterobacter]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ramA_TF NF012144
RamA family antibiotic efflux transcriptional regulator;
2-109 2.76e-79

RamA family antibiotic efflux transcriptional regulator;


:

Pssm-ID: 411085 [Multi-domain]  Cd Length: 108  Bit Score: 228.05  E-value: 2.76e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   2 TISAQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRY 81
Cdd:NF012144   1 TISAQVIDTIVEWIDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLRDTDQKVYDICLKY 80

                         90       100
                 ....*....|....*....|....*...
gi 654544545  82 GFESQQTFTRIFTRTFHQPPGAYRKENH 109
Cdd:NF012144  81 GFDSQQTFTRIFTRTFNQPPGAYRKENH 108
 
Name Accession Description Interval E-value
ramA_TF NF012144
RamA family antibiotic efflux transcriptional regulator;
2-109 2.76e-79

RamA family antibiotic efflux transcriptional regulator;


Pssm-ID: 411085 [Multi-domain]  Cd Length: 108  Bit Score: 228.05  E-value: 2.76e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   2 TISAQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRY 81
Cdd:NF012144   1 TISAQVIDTIVEWIDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLRDTDQKVYDICLKY 80

                         90       100
                 ....*....|....*....|....*...
gi 654544545  82 GFESQQTFTRIFTRTFHQPPGAYRKENH 109
Cdd:NF012144  81 GFDSQQTFTRIFTRTFNQPPGAYRKENH 108
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
6-105 3.25e-37

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 121.57  E-value: 3.25e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   6 QVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFES 85
Cdd:PRK10219   5 KIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVS 84

                         90       100
                 ....*....|....*....|
gi 654544545  86 QQTFTRIFTRTFHQPPGAYR 105
Cdd:PRK10219  85 QQTFSRVFRRQFDRTPSDYR 104
RobA_TF NF012228
MDR efflux pump AcrAB transcriptional activator RobA; The original characterization of RobA as ...
 5-106 2.31e-30

MDR efflux pump AcrAB transcriptional activator RobA; The original characterization of RobA as a Right side Origin of replication Binding protein A (robA) may be misleading. Characterizations in large numbers of papers since then treat RobA as a transcriptional activator of the AcrAB antibiotic efflux pump.


Pssm-ID: 467958 [Multi-domain]  Cd Length: 286  Bit Score: 109.22  E-value: 2.31e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   5 AQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFE 84
Cdd:NF012228   2 AGIIRDLLVWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGQAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFD 81

                         90       100
                 ....*....|....*....|..
gi 654544545  85 SQQTFTRIFTRTFHQPPGAYRK 106
Cdd:NF012228  82 SQQTFTRAFKKQFNQTPALYRR 103
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
22-105 5.34e-29

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 99.93  E-value: 5.34e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545    22 PLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQTFTRIFTRTFHQPP 101
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ....
gi 654544545   102 GAYR 105
Cdd:smart00342  81 SEYR 84
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 8-112 1.44e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 97.15  E-value: 1.44e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   8 IDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQ 87
Cdd:COG4977  212 LARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSAS 291

                         90       100
                 ....*....|....*....|....*
gi 654544545  88 TFTRIFTRTFHQPPGAYRKENHSRA 112
Cdd:COG4977  292 HFRRAFRRRFGVSPSAYRRRFRARA 316
HTH_18 pfam12833
Helix-turn-helix domain;
28-106 2.05e-21

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 80.71  E-value: 2.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   28 IARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDL-RESDERVYEICLRYGFESQQTFTRIFTRTFHQPPGAYRK 106
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
 
Name Accession Description Interval E-value
ramA_TF NF012144
RamA family antibiotic efflux transcriptional regulator;
2-109 2.76e-79

RamA family antibiotic efflux transcriptional regulator;


Pssm-ID: 411085 [Multi-domain]  Cd Length: 108  Bit Score: 228.05  E-value: 2.76e-79
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   2 TISAQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRY 81
Cdd:NF012144   1 TISAQVIDTIVEWIDDNLHQPLRIDDIARHAGYSKWHLQRLFLQYKGESLGRYIRERKLLLAARDLRDTDQKVYDICLKY 80

                         90       100
                 ....*....|....*....|....*...
gi 654544545  82 GFESQQTFTRIFTRTFHQPPGAYRKENH 109
Cdd:NF012144  81 GFDSQQTFTRIFTRTFNQPPGAYRKENH 108
PRK10219 PRK10219
superoxide response transcriptional regulator SoxS;
6-105 3.25e-37

superoxide response transcriptional regulator SoxS;


Pssm-ID: 182314 [Multi-domain]  Cd Length: 107  Bit Score: 121.57  E-value: 3.25e-37
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   6 QVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFES 85
Cdd:PRK10219   5 KIIQTLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRTVTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVS 84

                         90       100
                 ....*....|....*....|
gi 654544545  86 QQTFTRIFTRTFHQPPGAYR 105
Cdd:PRK10219  85 QQTFSRVFRRQFDRTPSDYR 104
PRK11511 PRK11511
MDR efflux pump AcrAB transcriptional activator MarA;
5-108 8.04e-34

MDR efflux pump AcrAB transcriptional activator MarA;


Pssm-ID: 236920 [Multi-domain]  Cd Length: 127  Bit Score: 113.66  E-value: 8.04e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   5 AQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFE 84
Cdd:PRK11511   8 AITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFE 87

                         90       100
                 ....*....|....*....|....
gi 654544545  85 SQQTFTRIFTRTFHQPPGAYRKEN 108
Cdd:PRK11511  88 SQQTLTRTFKNYFDVPPHKYRMTN 111
RobA_TF NF012228
MDR efflux pump AcrAB transcriptional activator RobA; The original characterization of RobA as ...
 5-106 2.31e-30

MDR efflux pump AcrAB transcriptional activator RobA; The original characterization of RobA as a Right side Origin of replication Binding protein A (robA) may be misleading. Characterizations in large numbers of papers since then treat RobA as a transcriptional activator of the AcrAB antibiotic efflux pump.


Pssm-ID: 467958 [Multi-domain]  Cd Length: 286  Bit Score: 109.22  E-value: 2.31e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   5 AQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFE 84
Cdd:NF012228   2 AGIIRDLLVWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGQAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFD 81

                         90       100
                 ....*....|....*....|..
gi 654544545  85 SQQTFTRIFTRTFHQPPGAYRK 106
Cdd:NF012228  82 SQQTFTRAFKKQFNQTPALYRR 103
PRK15121 PRK15121
MDR efflux pump AcrAB transcriptional activator RobA;
5-107 5.34e-30

MDR efflux pump AcrAB transcriptional activator RobA;


Pssm-ID: 185076 [Multi-domain]  Cd Length: 289  Bit Score: 108.17  E-value: 5.34e-30
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   5 AQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFE 84
Cdd:PRK15121   4 AGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKAAVALRLTSRPILDIALQYRFD 83

                         90       100
                 ....*....|....*....|...
gi 654544545  85 SQQTFTRIFTRTFHQPPGAYRKE 107
Cdd:PRK15121  84 SQQTFTRAFKKQFAQTPALYRRS 106
HTH_ARAC smart00342
helix_turn_helix, arabinose operon control protein;
22-105 5.34e-29

helix_turn_helix, arabinose operon control protein;


Pssm-ID: 197666 [Multi-domain]  Cd Length: 84  Bit Score: 99.93  E-value: 5.34e-29
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545    22 PLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQTFTRIFTRTFHQPP 101
Cdd:smart00342   1 PLTLEDLAEALGVSPRHLQRLFKKETGTTPKQYLRDRRLERARRLLRDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVTP 80


                   ....
gi 654544545   102 GAYR 105
Cdd:smart00342  81 SEYR 84
GlxA COG4977
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ...
 8-112 1.44e-25

Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];


Pssm-ID: 444002 [Multi-domain]  Cd Length: 318  Bit Score: 97.15  E-value: 1.44e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   8 IDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQ 87
Cdd:COG4977  212 LARAQAWMEANLEEPLSVDELARRAGMSPRTLERRFRAATGTTPARYLQRLRLERARRLLETTDLSIEEIAAACGFGSAS 291

                         90       100
                 ....*....|....*....|....*
gi 654544545  88 TFTRIFTRTFHQPPGAYRKENHSRA 112
Cdd:COG4977  292 HFRRAFRRRFGVSPSAYRRRFRARA 316
AraC COG2207
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
19-112 4.84e-22

AraC-type DNA-binding domain and AraC-containing proteins [Transcription];


Pssm-ID: 441809 [Multi-domain]  Cd Length: 258  Bit Score: 87.14  E-value: 4.84e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545  19 LHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQTFTRIFTRTFH 98
Cdd:COG2207  165 LLLLLTLEELARELGLSPRTLSRLFKEETGTSPKQYLRELRLERAKRLLAETDLSISEIAYELGFSSQSHFSRAFKKRFG 244

                         90
                 ....*....|....
gi 654544545  99 QPPGAYRKENHSRA 112
Cdd:COG2207  245 VTPSEYRKRLRARA 258
HTH_18 pfam12833
Helix-turn-helix domain;
28-106 2.05e-21

Helix-turn-helix domain;


Pssm-ID: 432818 [Multi-domain]  Cd Length: 81  Bit Score: 80.71  E-value: 2.05e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   28 IARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDL-RESDERVYEICLRYGFESQQTFTRIFTRTFHQPPGAYRK 106
Cdd:pfam12833   1 LAAALGMSPRTLSRLFKRELGLSPKEYLRRLRLERARRLLlEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
AdaA COG2169
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ...
 5-106 1.21e-15

Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];


Pssm-ID: 441772 [Multi-domain]  Cd Length: 358  Bit Score: 70.85  E-value: 1.21e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   5 AQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLaARDLRESDERVYEICLRYGFE 84
Cdd:COG2169   83 ADLVARACRLIEAGAEDRPSLEDLAARLGLSPRHLRRLFKAHTGVTPKAYARARRLLR-ARQLLQTGLSVTDAAYAAGFG 161

                         90       100
                 ....*....|....*....|..
gi 654544545  85 SQQTFTRIFTRTFHQPPGAYRK 106
Cdd:COG2169  162 SLSRFYEAFKKLLGMTPSAYRR 183
PRK09685 PRK09685
DNA-binding transcriptional activator FeaR; Provisional
 15-106 2.12e-14

DNA-binding transcriptional activator FeaR; Provisional


Pssm-ID: 236612 [Multi-domain]  Cd Length: 302  Bit Score: 66.98  E-value: 2.12e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545  15 IDDNLHQP-LRIEEIARHAGYSKWHLQRLFMQyKGESLGRYIRERKLLLAARDLRE--SDERVYEICLRYGFESQQTFTR 91
Cdd:PRK09685 206 IDQSIQEEiLRPEWIAGELGISVRSLYRLFAE-QGLVVAQYIRNRRLDRCADDLRPaaDDEKITSIAYKWGFSDSSHFST 284

                         90
                 ....*....|....*
gi 654544545  92 IFTRTFHQPPGAYRK 106
Cdd:PRK09685 285 AFKQRFGVSPGEYRR 299
ftrA PRK09393
transcriptional activator FtrA; Provisional
 11-106 1.28e-12

transcriptional activator FtrA; Provisional


Pssm-ID: 181818 [Multi-domain]  Cd Length: 322  Bit Score: 62.29  E-value: 1.28e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545  11 IVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRY-IRERklLLAARDLRESD-ERVYEICLRYGFESQQT 88
Cdd:PRK09393 223 LIDWMRAHLAEPHTVASLAARAAMSPRTFLRRFEAATGMTPAEWlLRER--LARARDLLESSaLSIDQIAERAGFGSEES 300

                         90
                 ....*....|....*...
gi 654544545  89 FTRIFTRTFHQPPGAYRK 106
Cdd:PRK09393 301 LRHHFRRRAATSPAAYRK 318
PRK10371 PRK10371
transcriptional regulator MelR;
8-113 1.71e-09

transcriptional regulator MelR;


Pssm-ID: 182416 [Multi-domain]  Cd Length: 302  Bit Score: 53.28  E-value: 1.71e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   8 IDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQ 87
Cdd:PRK10371 193 VSQMLGFIAENYDQALTINDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSS 272

                         90       100
                 ....*....|....*....|....*.
gi 654544545  88 TFTRIFTRTFHQPPGAYRKENHSRAH 113
Cdd:PRK10371 273 RFYSTFGKYVGMSPQQYRKLSQQRRQ 298
PRK13501 PRK13501
HTH-type transcriptional activator RhaR;
8-107 2.88e-09

HTH-type transcriptional activator RhaR;


Pssm-ID: 184092 [Multi-domain]  Cd Length: 290  Bit Score: 52.60  E-value: 2.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   8 IDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQ 87
Cdd:PRK13501 178 LDLIMSALQQSLGAYFDMADFCHKNQLVERSLKQLFRQQTGMSISHYLRQIRLCHAKCLLRGSEHRISDIAARCGFEDSN 257

                         90       100
                 ....*....|....*....|
gi 654544545  88 TFTRIFTRTFHQPPGAYRKE 107
Cdd:PRK13501 258 YFSAVFTREAGMTPRDYRQR 277
PRK10572 PRK10572
arabinose operon transcriptional regulator AraC;
8-106 8.39e-08

arabinose operon transcriptional regulator AraC;


Pssm-ID: 236717 [Multi-domain]  Cd Length: 290  Bit Score: 48.43  E-value: 8.39e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   8 IDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQ 87
Cdd:PRK10572 185 VREACQYISDHLASEFDIESVAQHVCLSPSRLAHLFRQQLGISVLRWREDQRISRAKLLLQTTRMPIATIGRNVGYDDQL 264

                         90
                 ....*....|....*....
gi 654544545  88 TFTRIFTRTFHQPPGAYRK 106
Cdd:PRK10572 265 YFSRVFKKCTGASPSEFRA 283
HTH_AraC pfam00165
Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the ...
 15-56 4.41e-07

Bacterial regulatory helix-turn-helix proteins, AraC family; In the absence of arabinose, the N-terminal arm of AraC binds to the DNA binding domain (pfam00165) and helps to hold the two DNA binding domains in a relative orientation that favours DNA looping. In the presence of arabinose, the arms bind over the arabinose on the dimerization domain, thus freeing the DNA-binding domains. The freed DNA-binding domains are then able to assume a conformation suitable for binding to the adjacent DNA sites that are utilized when AraC activates transcription, and hence AraC ceases looping the DNA when arabinose is added.


Pssm-ID: 425497 [Multi-domain]  Cd Length: 42  Bit Score: 42.91  E-value: 4.41e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 654544545   15 IDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIR 56
Cdd:pfam00165   1 LRENLSTNLTIADIADELGFSRSYFSRLFKKYTGVTPSQYRH 42
PRK13500 PRK13500
HTH-type transcriptional activator RhaR;
2-111 1.84e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184091 [Multi-domain]  Cd Length: 312  Bit Score: 44.71  E-value: 1.84e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   2 TISAQVIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRY 81
Cdd:PRK13500 202 TSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTEC 281

                         90       100       110
                 ....*....|....*....|....*....|
gi 654544545  82 GFESQQTFTRIFTRTFHQPPGAYRKENHSR 111
Cdd:PRK13500 282 GFEDSNYFSVVFTRETGMTPSQWRHLNSQK 311
PRK13502 PRK13502
HTH-type transcriptional activator RhaR;
7-105 4.41e-06

HTH-type transcriptional activator RhaR;


Pssm-ID: 184093 [Multi-domain]  Cd Length: 282  Bit Score: 43.50  E-value: 4.41e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545   7 VIDTIVEWIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQ 86
Cdd:PRK13502 177 LLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTGMTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDS 256

                         90
                 ....*....|....*....
gi 654544545  87 QTFTRIFTRTFHQPPGAYR 105
Cdd:PRK13502 257 NYFSVVFTRETGMTPSQWR 275
PRK13503 PRK13503
HTH-type transcriptional activator RhaS;
14-105 4.69e-06

HTH-type transcriptional activator RhaS;


Pssm-ID: 184094 [Multi-domain]  Cd Length: 278  Bit Score: 43.51  E-value: 4.69e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654544545  14 WIDDNLHQPLRIEEIARHAGYSKWHLQRLFMQYKGESLGRYIRERKLLLAARDLRESDERVYEICLRYGFESQQTFTRIF 93
Cdd:PRK13503 179 WLEDHFAEEVNWEALADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLLKARHLLRHSDASVTDIAYRCGFGDSNHFSTLF 258

                         90
                 ....*....|..
gi 654544545  94 TRTFHQPPGAYR 105
Cdd:PRK13503 259 RREFSWSPRDIR 270
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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