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Conserved domains on  [gi|654546818|ref|WP_028014524|]
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MULTISPECIES: PTS N-acetylgalactosamine transporter subunit IIB [Enterobacter]

Protein Classification

PTS mannose/fructose/sorbose transporter subunit IIAB( domain architecture ID 10793572)

PTS mannose/fructose/sorbose transporter subunit IIAB catalyzes the phosphorylation of incoming sugar substrates leading to their translocation across the cell membrane

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK11425 PRK11425
PTS N-acetylgalactosamine transporter subunit IIB;
1-157 2.07e-109

PTS N-acetylgalactosamine transporter subunit IIB;


:

Pssm-ID: 183129  Cd Length: 157  Bit Score: 307.97  E-value: 2.07e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   1 MPNIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRAADRQKIL 80
Cdd:PRK11425   1 MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKIL 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 654546818  81 LVCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDLFKLL 157
Cdd:PRK11425  81 LVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGVECFVQGVPTEPAVDLFKLL 157
 
Name Accession Description Interval E-value
PRK11425 PRK11425
PTS N-acetylgalactosamine transporter subunit IIB;
1-157 2.07e-109

PTS N-acetylgalactosamine transporter subunit IIB;


Pssm-ID: 183129  Cd Length: 157  Bit Score: 307.97  E-value: 2.07e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   1 MPNIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRAADRQKIL 80
Cdd:PRK11425   1 MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKIL 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 654546818  81 LVCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDLFKLL 157
Cdd:PRK11425  81 LVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGVECFVQGVPTEPAVDLFKLL 157
pts-sorbose TIGR00854
PTS system, mannose/fructose/sorbose family, IIB component; Bacterial PTS transporters ...
3-152 6.74e-78

PTS system, mannose/fructose/sorbose family, IIB component; Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 129933  Cd Length: 151  Bit Score: 228.12  E-value: 6.74e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818    3 NIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRAADR-QKILL 81
Cdd:TIGR00854   1 NIVLARIDDRLIHGQVGTTWTKVAGANRIIVVNDDVANDEVRQTLMGIVAPTGFKVRFVSLEKTINVIHKPAYHdQTIFL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654546818   82 VCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALD 152
Cdd:TIGR00854  81 LFRNPQDVLTLVEGGVPIKTVNVGGMHFSNGKKQITKKVSVDDQDITAFRFLKQRGVKLFLRDVPSDPSED 151
PTS_IIB_man cd00001
PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
4-153 7.54e-71

PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.


Pssm-ID: 237975  Cd Length: 151  Bit Score: 210.16  E-value: 7.54e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   4 IVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRA-ADRQKILLV 82
Cdd:cd00001    1 IVLARIDDRLIHGQVATTWTKELNANRIIVVNDEVANDELRKTLLKLAAPPGVKLRIFTVEKAIEAINSPkYDKQRVFLL 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654546818  83 CKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDL 153
Cdd:cd00001   81 FKNPQDVLRLVEGGVPIKTINVGNMAFRPGKVQITKAVSLDEEDVAAFKELAQKGVKVEIQMVPNDKKVDL 151
AgaB COG3444
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB ...
3-157 3.06e-68

Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism];


Pssm-ID: 442668  Cd Length: 157  Bit Score: 203.80  E-value: 3.06e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   3 NIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRA-ADRQKILL 81
Cdd:COG3444    2 AIVLARIDDRLIHGQVATAWTKELGANRIIVVNDEVAKDPLRKTLLKMAAPPGVKVSVLTVEKAIEVLKKPkYDKQKVFL 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 654546818  82 VCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDLFKLL 157
Cdd:COG3444   82 LFKNPEDALRLVEGGVPIKEVNVGGMAFREGKKQITKAVSVDEEDVEALKELAEKGVEVEIQKVPSDSKVDLKDLL 157
PTSIIB_sorb pfam03830
PTS system sorbose subfamily IIB component;
4-149 6.10e-66

PTS system sorbose subfamily IIB component;


Pssm-ID: 461068  Cd Length: 148  Bit Score: 197.65  E-value: 6.10e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818    4 IVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRA-ADRQKILLV 82
Cdd:pfam03830   1 IVLVRIDDRLIHGQVATAWTKSLGANRIIVVDDEVAKDPLRKSLLKMAAPPGVKVSILSVEKAIEVLKKGkYDKQKVFLL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 654546818   83 CKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTET 149
Cdd:pfam03830  81 FKNPEDALRLVEGGVPIKEVNIGGMHYREGKKQVSKSVSLTEEEIEALKELADKGVEVEFQMVPSDK 147
 
Name Accession Description Interval E-value
PRK11425 PRK11425
PTS N-acetylgalactosamine transporter subunit IIB;
1-157 2.07e-109

PTS N-acetylgalactosamine transporter subunit IIB;


Pssm-ID: 183129  Cd Length: 157  Bit Score: 307.97  E-value: 2.07e-109
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   1 MPNIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRAADRQKIL 80
Cdd:PRK11425   1 MPNIVLSRIDERLIHGQVGVQWVGFAGANLVLVANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKIL 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 654546818  81 LVCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDLFKLL 157
Cdd:PRK11425  81 LVCKTPADFLTLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGVECFVQGVPTEPAVDLFKLL 157
pts-sorbose TIGR00854
PTS system, mannose/fructose/sorbose family, IIB component; Bacterial PTS transporters ...
3-152 6.74e-78

PTS system, mannose/fructose/sorbose family, IIB component; Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families.It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIB components of this family of PTS transporters. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids, Signal transduction, PTS]


Pssm-ID: 129933  Cd Length: 151  Bit Score: 228.12  E-value: 6.74e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818    3 NIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRAADR-QKILL 81
Cdd:TIGR00854   1 NIVLARIDDRLIHGQVGTTWTKVAGANRIIVVNDDVANDEVRQTLMGIVAPTGFKVRFVSLEKTINVIHKPAYHdQTIFL 80
                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654546818   82 VCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALD 152
Cdd:TIGR00854  81 LFRNPQDVLTLVEGGVPIKTVNVGGMHFSNGKKQITKKVSVDDQDITAFRFLKQRGVKLFLRDVPSDPSED 151
PTS_IIB_man cd00001
PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: ...
4-153 7.54e-71

PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. The active site histidine receives a phosphate group from the IIA subunit and transfers it to the substrate.


Pssm-ID: 237975  Cd Length: 151  Bit Score: 210.16  E-value: 7.54e-71
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   4 IVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRA-ADRQKILLV 82
Cdd:cd00001    1 IVLARIDDRLIHGQVATTWTKELNANRIIVVNDEVANDELRKTLLKLAAPPGVKLRIFTVEKAIEAINSPkYDKQRVFLL 80
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 654546818  83 CKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDL 153
Cdd:cd00001   81 FKNPQDVLRLVEGGVPIKTINVGNMAFRPGKVQITKAVSLDEEDVAAFKELAQKGVKVEIQMVPNDKKVDL 151
AgaB COG3444
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB ...
3-157 3.06e-68

Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism];


Pssm-ID: 442668  Cd Length: 157  Bit Score: 203.80  E-value: 3.06e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   3 NIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRA-ADRQKILL 81
Cdd:COG3444    2 AIVLARIDDRLIHGQVATAWTKELGANRIIVVNDEVAKDPLRKTLLKMAAPPGVKVSVLTVEKAIEVLKKPkYDKQKVFL 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 654546818  82 VCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDLFKLL 157
Cdd:COG3444   82 LFKNPEDALRLVEGGVPIKEVNVGGMAFREGKKQITKAVSVDEEDVEALKELAEKGVEVEIQKVPSDSKVDLKDLL 157
PTSIIB_sorb pfam03830
PTS system sorbose subfamily IIB component;
4-149 6.10e-66

PTS system sorbose subfamily IIB component;


Pssm-ID: 461068  Cd Length: 148  Bit Score: 197.65  E-value: 6.10e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818    4 IVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVIDNIHRA-ADRQKILLV 82
Cdd:pfam03830   1 IVLVRIDDRLIHGQVATAWTKSLGANRIIVVDDEVAKDPLRKSLLKMAAPPGVKVSILSVEKAIEVLKKGkYDKQKVFLL 80
                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 654546818   83 CKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTET 149
Cdd:pfam03830  81 FKNPEDALRLVEGGVPIKEVNIGGMHYREGKKQVSKSVSLTEEEIEALKELADKGVEVEFQMVPSDK 147
PRK09756 PRK09756
PTS N-acetylgalactosamine transporter subunit IIB;
1-148 3.47e-64

PTS N-acetylgalactosamine transporter subunit IIB;


Pssm-ID: 182061  Cd Length: 158  Bit Score: 193.50  E-value: 3.47e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   1 MPNIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVlAE--GIAVRFWSLQKVIDNIHRAADRQK 78
Cdd:PRK09756   3 SPNILLTRIDNRLVHGQVGVTWTSTIGANLLVVVDDVVANDDIQQKLMGIT-AEtyGFGIRFFTIEKTINVIGKAAPHQK 81
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818  79 ILLVCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTE 148
Cdd:PRK09756  82 IFLICRTPQTVRKLVEGGIDLKDVNVGNMHFSEGKKQISSKVYVDDQDLADLRFIKQRGVNVFIQDVPGD 151
PRK15088 PRK15088
PTS system mannose-specific transporter subunits IIAB; Provisional
3-157 6.84e-39

PTS system mannose-specific transporter subunits IIAB; Provisional


Pssm-ID: 185045 [Multi-domain]  Cd Length: 322  Bit Score: 133.97  E-value: 6.84e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654546818   3 NIVLCRIDERLIHGQVGVQWVGFAGANLVLVANDEVADDPVQQNLMEMVLAEGIAVRFWSLQKVI---DNIHRAADRqkI 79
Cdd:PRK15088 164 VIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAHVVDVAKMIrvyNNPKYAGER--V 241
                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 654546818  80 LLVCKSPADFLKLVEGGVPITRINVGNMHYASGKQQIAKTVSVDANDIAAFNGLKAAGVECFVQGVPTETALDLFKLL 157
Cdd:PRK15088 242 MLLFTNPTDVERLVEGGVKITSVNIGGMAFRQGKTQVNNAVSVDEKDIEAFKKLNARGIELEVRKVSSDPKLKMMDLI 319
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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