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Conserved domains on  [gi|654680783|ref|WP_028139607|]
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MULTISPECIES: DUF1330 domain-containing protein [Bradyrhizobium]

Protein Classification

DUF1330 domain-containing protein( domain architecture ID 10009329)

DUF1330 domain-containing protein similar to Agrobacterium Tumefaciens protein Atu0297

CATH:  3.30.70.100
SCOP:  4003602

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG5470 COG5470
Uncharacterized conserved protein, DUF1330 family [Function unknown];
42-129 6.11e-20

Uncharacterized conserved protein, DUF1330 family [Function unknown];


:

Pssm-ID: 444221  Cd Length: 95  Bit Score: 78.33  E-value: 6.11e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654680783  42 KASGAEAYAAYGRESGPVFERLGGRIIWQGKFELMLIGpqEERWDHCFIAEYPDVGAFVEMIRDPVYREAVKHRQAAVED 121
Cdd:COG5470    9 DVTDPEAYAEYAAAAAPALAKHGGRFLVRGGAPEVLEG--EWPPDRVVVIEFPSMEAARAWYNSPEYQAAKALRQAAAEG 86


                 ....*...
gi 654680783 122 SRLIRHAV 129
Cdd:COG5470   87 DLIIVEGV 94
 
Name Accession Description Interval E-value
COG5470 COG5470
Uncharacterized conserved protein, DUF1330 family [Function unknown];
42-129 6.11e-20

Uncharacterized conserved protein, DUF1330 family [Function unknown];


Pssm-ID: 444221  Cd Length: 95  Bit Score: 78.33  E-value: 6.11e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654680783  42 KASGAEAYAAYGRESGPVFERLGGRIIWQGKFELMLIGpqEERWDHCFIAEYPDVGAFVEMIRDPVYREAVKHRQAAVED 121
Cdd:COG5470    9 DVTDPEAYAEYAAAAAPALAKHGGRFLVRGGAPEVLEG--EWPPDRVVVIEFPSMEAARAWYNSPEYQAAKALRQAAAEG 86


                 ....*...
gi 654680783 122 SRLIRHAV 129
Cdd:COG5470   87 DLIIVEGV 94
DUF1330 pfam07045
Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial ...
 47-118 3.99e-06

Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.


Pssm-ID: 429262  Cd Length: 94  Bit Score: 42.57  E-value: 3.99e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 654680783   47 EAYAAYGRESGPVFERLGGRIIWQ-GKFELMligpqEERWDH--CFIAEYPDVGAFVEMIRDPVYREAVKHRQAA 118
Cdd:pfam07045  14 EAYEEYAALAGPALAKHGGRFLARgGKPEVL-----EGDWAPtrTVVIEFPSMEAARAWYNSPEYQAARALRQAA 83
 
Name Accession Description Interval E-value
COG5470 COG5470
Uncharacterized conserved protein, DUF1330 family [Function unknown];
42-129 6.11e-20

Uncharacterized conserved protein, DUF1330 family [Function unknown];


Pssm-ID: 444221  Cd Length: 95  Bit Score: 78.33  E-value: 6.11e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 654680783  42 KASGAEAYAAYGRESGPVFERLGGRIIWQGKFELMLIGpqEERWDHCFIAEYPDVGAFVEMIRDPVYREAVKHRQAAVED 121
Cdd:COG5470    9 DVTDPEAYAEYAAAAAPALAKHGGRFLVRGGAPEVLEG--EWPPDRVVVIEFPSMEAARAWYNSPEYQAAKALRQAAAEG 86


                 ....*...
gi 654680783 122 SRLIRHAV 129
Cdd:COG5470   87 DLIIVEGV 94
DUF1330 pfam07045
Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial ...
 47-118 3.99e-06

Domain of unknown function (DUF1330); This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.


Pssm-ID: 429262  Cd Length: 94  Bit Score: 42.57  E-value: 3.99e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 654680783   47 EAYAAYGRESGPVFERLGGRIIWQ-GKFELMligpqEERWDH--CFIAEYPDVGAFVEMIRDPVYREAVKHRQAA 118
Cdd:pfam07045  14 EAYEEYAALAGPALAKHGGRFLARgGKPEVL-----EGDWAPtrTVVIEFPSMEAARAWYNSPEYQAARALRQAA 83
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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