NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|655281821|ref|WP_028691219|]
View 

MULTISPECIES: M48 family metallopeptidase [Pseudomonas]

Protein Classification

tetratricopeptide repeat protein( domain architecture ID 11469162)

tetratricopeptide repeat (TPR) protein may adopt a right-handed helical structure with an amphipathic channel and may function as an interaction scaffold in the formation of multi-protein complexes

CATH:  1.25.40.10
Gene Ontology:  GO:0005515
PubMed:  10517866|30708253
SCOP:  3001345

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 159-255 1.57e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 1.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDlqaqLWNTIAQA 238
Cdd:COG4783   40 AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE----AYLRLARA 115

                         90
                 ....*....|....*..
gi 655281821 239 REKQGDSAGAALARQKA 255
Cdd:COG4783  116 YRALGRPDEAIAALEKA 132
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 159-255 1.57e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 1.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDlqaqLWNTIAQA 238
Cdd:COG4783   40 AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE----AYLRLARA 115

                         90
                 ....*....|....*..
gi 655281821 239 REKQGDSAGAALARQKA 255
Cdd:COG4783  116 YRALGRPDEAIAALEKA 132
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 149-239 6.85e-06

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 46.51  E-value: 6.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  149 ADEQLDGPVLA-LLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLfRLA-QVRLSQGDAAQSEQLArRALTYANGRPD 226
Cdd:TIGR00540 125 AAELAPNSELAvLLTRAELLLDQRDYEAALAALDSLQAQAPRHTAVL-RLAlRAYQRSGNWDALLKLL-PALRKAKALSP 202

                          90
                  ....*....|...
gi 655281821  227 LQAQLWNTIAQAR 239
Cdd:TIGR00540 203 EEAARLEQQAYIG 215
TPR_19 pfam14559
Tetratricopeptide repeat;
170-231 6.09e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 40.26  E-value: 6.09e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 655281821  170 SGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPD---LQAQL 231
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRyaaLLAKL 65
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 171-256 3.69e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 36.90  E-value: 3.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821   171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLwntiAQAREKQGDSAGAAL 250
Cdd:smart01043  41 ADVPDEDWAEAERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLL----MRALYRAGRRAEALR 116


                   ....*.
gi 655281821   251 ARQKAR 256
Cdd:smart01043 117 AYRRLR 122
 
Name Accession Description Interval E-value
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 159-255 1.57e-10

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 57.51  E-value: 1.57e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDlqaqLWNTIAQA 238
Cdd:COG4783   40 AFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPE----AYLRLARA 115

                         90
                 ....*....|....*..
gi 655281821 239 REKQGDSAGAALARQKA 255
Cdd:COG4783  116 YRALGRPDEAIAALEKA 132
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 154-255 2.47e-10

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 56.94  E-value: 2.47e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 154 DGPVLALLttAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLwn 233
Cdd:COG4235   16 DAEGWLLL--GRAYLRLGRYDEALAAYEKALRLDPDNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLL-- 91

                         90       100
                 ....*....|....*....|..
gi 655281821 234 tiAQAREKQGDSAGAALARQKA 255
Cdd:COG4235   92 --GLAAFQQGDYAEAIAAWQKL 111
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 149-253 1.28e-09

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.08  E-value: 1.28e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 149 ADEQLDGPVLALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYAngrPDLq 228
Cdd:COG3914   70 AAAALLLLAALLELAALLLQALGRYEEALALYRRALALNPDNAEALFNLGNLLLALGRLEEALAALRRALALN---PDF- 145

                         90       100
                 ....*....|....*....|....*.
gi 655281821 229 AQLWNTIAQAREKQGD-SAGAALARQ 253
Cdd:COG3914  146 AEAYLNLGEALRRLGRlEEAIAALRR 171
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
171-255 4.97e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 52.48  E-value: 4.97e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLaRRALTYAngrPDlQAQLWNTIAQAREKQGDSAGAAL 250
Cdd:COG3063    6 GDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGRYDEAIAL-EKALKLD---PN-NAEALLNLAELLLELGDYDEALA 80


                 ....*
gi 655281821 251 ARQKA 255
Cdd:COG3063   81 YLERA 85
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
157-255 7.80e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.63  E-value: 7.80e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 157 VLALLTTAQQQQGsgDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYAngrPDLqAQLWNTIA 236
Cdd:COG0457   10 AYNNLGLAYRRLG--RYEEAIEDYEKALELDPDDAEALYNLGLAYLRLGRYEEALADYEQALELD---PDD-AEALNNLG 83

                         90
                 ....*....|....*....
gi 655281821 237 QAREKQGDSAGAALARQKA 255
Cdd:COG0457   84 LALQALGRYEEALEDYDKA 102
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 147-256 7.88e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.43  E-value: 7.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 147 LSADEQLDGPVLALLTTAQQQQGsgDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPD 226
Cdd:COG5010   46 GRDKLAKAFAIESPSDNLYNKLG--DFEESLALLEQALQLDPNNPELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPN 123

                         90       100       110
                 ....*....|....*....|....*....|
gi 655281821 227 LQAQLwntiAQAREKQGDSAGAALARQKAR 256
Cdd:COG5010  124 AYSNL----AALLLSLGQDDEAKAALQRAL 149
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
171-255 2.63e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 53.09  E-value: 2.63e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYangRPDLqAQLWNTIAQAREKQGDSAGAAL 250
Cdd:COG0457   56 GRYEEALADYEQALELDPDDAEALNNLGLALQALGRYEEALEDYDKALEL---DPDD-AEALYNLGLALLELGRYDEAIE 131


                 ....*
gi 655281821 251 ARQKA 255
Cdd:COG0457  132 AYERA 136
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 159-255 6.30e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 50.58  E-value: 6.30e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPdlqaQLWNTIAQA 238
Cdd:COG4783    6 ALYALAQALLLAGDYDEAEALLEKALELDPDNPEAFALLGEILLQLGDLDEAIVLLHEALELDPDEP----EARLNLGLA 81

                         90
                 ....*....|....*..
gi 655281821 239 REKQGDSAGAALARQKA 255
Cdd:COG4783   82 LLKAGDYDEALALLEKA 98
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 154-248 8.71e-08

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 52.04  E-value: 8.71e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 154 DGPVLALLTTAQQQQGsgDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLwn 233
Cdd:COG2956  109 DAEALRLLAEIYEQEG--DWEKAIEVLERLLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLL-- 184

                         90
                 ....*....|....*
gi 655281821 234 tiAQAREKQGDSAGA 248
Cdd:COG2956  185 --AELYLEQGDYEEA 197
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
171-256 9.04e-08

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 51.55  E-value: 9.04e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYAngrPDLqAQLWNTIAQAREKQGDSAGAAL 250
Cdd:COG0457   90 GRYEEALEDYDKALELDPDDAEALYNLGLALLELGRYDEAIEAYERALELD---PDD-ADALYNLGIALEKLGRYEEALE 165


                 ....*.
gi 655281821 251 ARQKAR 256
Cdd:COG0457  166 LLEKLE 171
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 154-255 1.41e-07

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 51.92  E-value: 1.41e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 154 DGPVLALLTTAQQQQGsgDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYAngrPDLqAQLWN 233
Cdd:COG3914  111 NAEALFNLGNLLLALG--RLEEALAALRRALALNPDFAEAYLNLGEALRRLGRLEEAIAALRRALELD---PDN-AEALN 184

                         90       100
                 ....*....|....*....|..
gi 655281821 234 TIAQAREKQGDSAGAALARQKA 255
Cdd:COG3914  185 NLGNALQDLGRLEEAIAAYRRA 206
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 149-255 2.52e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 50.50  E-value: 2.52e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 149 ADEQLDGPVLALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYAngrPDlQ 228
Cdd:COG2956  136 LLKLGPENAHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALERALEQD---PD-Y 211

                         90       100
                 ....*....|....*....|....*..
gi 655281821 229 AQLWNTIAQAREKQGDSAGAALARQKA 255
Cdd:COG2956  212 LPALPRLAELYEKLGDPEEALELLRKA 238
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 147-255 1.15e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 48.57  E-value: 1.15e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 147 LSADEQLDgpvLALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGrpd 226
Cdd:COG2956   69 LERDPDRA---EALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLGPE--- 142

                         90       100
                 ....*....|....*....|....*....
gi 655281821 227 lQAQLWNTIAQAREKQGDSAGAALARQKA 255
Cdd:COG2956  143 -NAHAYCELAELYLEQGDYDEAIEALEKA 170
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 176-255 1.56e-06

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 46.15  E-value: 1.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 176 AASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLwntiAQAREKQGDSAGAALARQKA 255
Cdd:COG4235    2 AIARLRQALAANPNDAEGWLLLGRAYLRLGRYDEALAAYEKALRLDPDNADALLDL----AEALLAAGDTEEAEELLERA 77
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 159-252 3.50e-06

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 47.21  E-value: 3.50e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLWNTIAQA 238
Cdd:COG3071   87 VLLTRAELLLDQGQAEQALATLEALRAGAPRHPQVLRLLLQAYRQLGDWEELLELLPALRKHKALSAEEAQALERRAYLG 166

                         90
                 ....*....|....
gi 655281821 239 REKQGDSAGAALAR 252
Cdd:COG3071  167 LLRQAARDAEALKA 180
TPR_hemY_coli TIGR00540
heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized ...
 149-239 6.85e-06

heme biosynthesis-associated TPR protein; Members of this protein family are uncharacterized tetratricopeptide repeat (TPR) proteins invariably found in heme biosynthesis gene clusters. The absence of any invariant residues other than Ala argues against this protein serving as an enzyme per se. The gene symbol hemY assigned in E. coli is unfortunate in that an unrelated protein, protoporphyrinogen oxidase (HemG in E. coli) is designated HemY in Bacillus subtilis. [Unknown function, General]


Pssm-ID: 273126 [Multi-domain]  Cd Length: 367  Bit Score: 46.51  E-value: 6.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  149 ADEQLDGPVLA-LLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLfRLA-QVRLSQGDAAQSEQLArRALTYANGRPD 226
Cdd:TIGR00540 125 AAELAPNSELAvLLTRAELLLDQRDYEAALAALDSLQAQAPRHTAVL-RLAlRAYQRSGNWDALLKLL-PALRKAKALSP 202

                          90
                  ....*....|...
gi 655281821  227 LQAQLWNTIAQAR 239
Cdd:TIGR00540 203 EEAARLEQQAYIG 215
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 159-255 7.44e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 7.44e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLwntiAQA 238
Cdd:COG2956   44 AHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQDYLKAGLLDRAEELLEKLLELDPDDAEALRLL----AEI 119

                         90
                 ....*....|....*..
gi 655281821 239 REKQGDSAGAALARQKA 255
Cdd:COG2956  120 YEQEGDWEKAIEVLERL 136
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 155-249 1.65e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.84  E-value: 1.65e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  155 GPVLALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPD---LQAQL 231
Cdd:TIGR02917 191 GNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLahyLKALV 270

                          90       100
                  ....*....|....*....|.
gi 655281821  232 ---WNTIAQAREKQGDSAGAA 249
Cdd:TIGR02917 271 dfqKKNYEDARETLQDALKSA 291
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 146-256 1.91e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 45.46  E-value: 1.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  146 GLSADEQLDgpVLALLTTAQQqqGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTyanGRP 225
Cdd:TIGR02917 118 LLDDEGAAE--LLALRGLAYL--GLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLT---ADP 190

                          90       100       110
                  ....*....|....*....|....*....|.
gi 655281821  226 DlQAQLWNTIAQAREKQGDSAGAALARQKAR 256
Cdd:TIGR02917 191 G-NVDALLLKGDLLLSLGNIELALAAYRKAI 220
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
154-218 2.13e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 42.08  E-value: 2.13e-05
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 655281821 154 DGPVLALLTTAQQQQGSGDfngAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRAL 218
Cdd:COG3063   25 NADALNNLGLLLLEQGRYD---EAIALEKALKLDPNNAEALLNLAELLLELGDYDEALAYLERAL 86
YfgM COG2976
Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal ...
 157-255 2.42e-05

Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms];


Pssm-ID: 442215 [Multi-domain]  Cd Length: 207  Bit Score: 44.08  E-value: 2.42e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 157 VLALLTTAQQQQGSGDFNGAASSLERAQRIAPRE---PQVLFRLAQVRLSQGDAAQseqlarrALTYANGRPD--LQAQL 231
Cdd:COG2976   90 ALAALLLAKAAVDAGDLDKAAAQLQWVLDNAKDPalkALARLRLARVLLAQKKYDE-------ALATLDAVKPeaFAALY 162

                         90       100
                 ....*....|....*....|....
gi 655281821 232 WNTIAQAREKQGDSAGAALARQKA 255
Cdd:COG2976  163 AELRGDILLAQGDKAEARAAYQKA 186
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 171-254 3.01e-05

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 44.98  E-value: 3.01e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYAngrPDlQAQLWNTIAQAREKQGDSAGAAL 250
Cdd:COG3914  160 GRLEEAIAALRRALELDPDNAEALNNLGNALQDLGRLEEAIAAYRRALELD---PD-NADAHSNLLFALRQACDWEVYDR 235


                 ....
gi 655281821 251 ARQK 254
Cdd:COG3914  236 FEEL 239
TPR_19 pfam14559
Tetratricopeptide repeat;
170-231 6.09e-05

Tetratricopeptide repeat;


Pssm-ID: 434038 [Multi-domain]  Cd Length: 65  Bit Score: 40.26  E-value: 6.09e-05
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 655281821  170 SGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPD---LQAQL 231
Cdd:pfam14559   1 EGDYAEALELLEQALAEDPDNAEARLGLAEALLALGRLDEAEALLAALPAADPDDPRyaaLLAKL 65
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 157-256 6.26e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.18  E-value: 6.26e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 157 VLALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALtyangrpDLQAQLWNTIA 236
Cdd:COG2956  178 ARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEALELLRKAL-------ELDPSDDLLLA 250

                         90       100
                 ....*....|....*....|...
gi 655281821 237 QAR---EKQGDSAGAALARQKAR 256
Cdd:COG2956  251 LADlleRKEGLEAALALLERQLR 273
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 170-218 6.84e-05

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 41.72  E-value: 6.84e-05
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*....
gi 655281821 170 SGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRAL 218
Cdd:COG4783   85 AGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGRPDEAIAALEKAL 133
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 159-238 9.00e-05

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 41.14  E-value: 9.00e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLqAQLWNTIAQA 238
Cdd:COG4235   53 ALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLAAFQQGDYAEAIAAWQKLLALLPADAPA-RLLEASIAEA 131
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 151-259 9.78e-05

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 42.98  E-value: 9.78e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 151 EQLDGPVLALLTTAQQQQGSGDFNGAASSLERAQRIAPR-EPQVLFRLAQVRLSQGDAAQseqlARRALTYANGRPDLQA 229
Cdd:COG3071   44 EHSEAPLLAYLLAARAAQALGDYERRDEYLAQALELAPEaELAVLLTRAELLLDQGQAEQ----ALATLEALRAGAPRHP 119

                         90       100       110
                 ....*....|....*....|....*....|.
gi 655281821 230 QLWNTIAQAREKQGDSAGA-ALARQKARVNL 259
Cdd:COG3071  120 QVLRLLLQAYRQLGDWEELlELLPALRKHKA 150
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 170-254 1.73e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 39.97  E-value: 1.73e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 170 SGDFNGAASSLERAQRIAPRE---PQVLFRLAQVRLSQGDAAQSEQLARRALT-YANGRPDLQAQLWntIAQAREKQGDS 245
Cdd:COG1729    6 AGDYDEAIAAFKAFLKRYPNSplaPDALYWLGEAYYALGDYDEAAEAFEKLLKrYPDSPKAPDALLK--LGLSYLELGDY 83


                 ....*....
gi 655281821 246 AGAALARQK 254
Cdd:COG1729   84 DKARATLEE 92
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 158-258 1.76e-04

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 42.76  E-value: 1.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  158 LALLTTAQQQQGsgDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYangRPDL-QAQLWNTIA 236
Cdd:TIGR02917 604 WLMLGRAQLAAG--DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL---KPDNtEAQIGLAQL 678

                          90       100
                  ....*....|....*....|...
gi 655281821  237 QAREKQGDSAGAALAR-QKARVN 258
Cdd:TIGR02917 679 LLAAKRTESAKKIAKSlQKQHPK 701
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
185-255 3.69e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 40.76  E-value: 3.69e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 655281821 185 RIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYangRPDLqAQLWNTIAQAREKQGDSAGAALARQKA 255
Cdd:COG0457    2 ELDPDDAEAYNNLGLAYRRLGRYEEAIEDYEKALEL---DPDD-AEALYNLGLAYLRLGRYEEALADYEQA 68
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 153-244 6.85e-04

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.10  E-value: 6.85e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 153 LDGPVLALLT---TAQQQQGSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQA 229
Cdd:COG2956    1 LLLPVAAALGwyfKGLNYLLNGQPDKAIDLLEEALELDPETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALL 80

                         90
                 ....*....|....*
gi 655281821 230 QLwntiAQAREKQGD 244
Cdd:COG2956   81 EL----AQDYLKAGL 91
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
171-252 7.13e-04

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 39.99  E-value: 7.13e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLWNTIAQAREKQGDSAGAAL 250
Cdd:COG0457  124 GRYDEAIEAYERALELDPDDADALYNLGIALEKLGRYEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLAL 203


                 ..
gi 655281821 251 AR 252
Cdd:COG0457  204 EQ 205
HemYx COG3071
Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to ...
 150-255 9.10e-04

Uncharacterized protein HemY, contains HemY_N domain and TPR repeats (unrelated to protoporphyrinogen oxidase HemY) [Function unknown];


Pssm-ID: 442305 [Multi-domain]  Cd Length: 323  Bit Score: 39.89  E-value: 9.10e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 150 DEQLDGPVLALLTTAQqqqgSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALtyaNGRPDLQA 229
Cdd:COG3071  221 KRQWDPRLVRLYGRLQ----GGDPAKQLKRAEKWLKKHPNDPDLLLALGRLCLRNQLWGKAREYLEAAL---ALRPSAEA 293

                         90       100
                 ....*....|....*....|....*.
gi 655281821 230 QLWntIAQAREKQGDSAGAALARQKA 255
Cdd:COG3071  294 YAE--LARLLEQLGDPEEAAEHYRKA 317
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 169-256 1.81e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 39.30  E-value: 1.81e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  169 GSGDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTyanGRPDlQAQLWNTIAQAREKQGDSAGA 248
Cdd:TIGR02917 409 SQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK---KQPD-NASLHNLLGAIYLGKGDLAKA 484


                  ....*...
gi 655281821  249 ALARQKAR 256
Cdd:TIGR02917 485 REAFEKAL 492
BTAD smart01043
Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. ...
 171-256 3.69e-03

Bacterial transcriptional activator domain; Found in the DNRI/REDD/AFSR family of regulators. This region of AFSR along with the C terminal region is capable of independently directing actinorhodin production. This family contains TPR repeats.


Pssm-ID: 198111 [Multi-domain]  Cd Length: 145  Bit Score: 36.90  E-value: 3.69e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821   171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLwntiAQAREKQGDSAGAAL 250
Cdd:smart01043  41 ADVPDEDWAEAERERLRELRLEALEALAEALLALGRHEEALALLERLLALDPLRERLHRLL----MRALYRAGRRAEALR 116


                   ....*.
gi 655281821   251 ARQKAR 256
Cdd:smart01043 117 AYRRLR 122
TPR_15 pfam13429
Tetratricopeptide repeat;
170-256 3.93e-03

Tetratricopeptide repeat;


Pssm-ID: 433199 [Multi-domain]  Cd Length: 279  Bit Score: 37.72  E-value: 3.93e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  170 SGDFNGAASSLERAQRI--APREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQ-LWNTIAQareKQGDSA 246
Cdd:pfam13429 122 AGDYDRLARLLASLEELpaAEQSPAFWLARAEYYRQTGEPDAALRDYRRALALAPASTELRAAlLWFLIDL---GRRAEL 198

                          90
                  ....*....|
gi 655281821  247 GAALARQKAR 256
Cdd:pfam13429 199 RPALAAWRAR 208
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
171-259 4.52e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 37.59  E-value: 4.52e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821 171 GDFNGAASSLERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDlqAQLWNTIAQAREKQgDSAGAAL 250
Cdd:COG4785  121 GDYDAALEDFDRALELDPDYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPE--RALWLYLAERKLDP-EKALALL 197


                 ....*....
gi 655281821 251 ARQKARVNL 259
Cdd:COG4785  198 LEDWATAYL 206
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 181-241 5.16e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 38.14  E-value: 5.16e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 655281821  181 ERAQRIAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYANGRPDLQAQLWNTIAQAREK 241
Cdd:TIGR02917 827 ERALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK 887
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 159-230 6.79e-03

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 35.35  E-value: 6.79e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 655281821 159 ALLTTAQQQQGSGDFNGAASSLERAQRIAP---REPQVLFRLAQVRLSQGDAAQSEQLARRAL-TYANGRPDLQAQ 230
Cdd:COG1729   32 ALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLSYLELGDYDKARATLEELIkKYPDSEAAKEAR 107
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
172-248 7.03e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 36.82  E-value: 7.03e-03
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 655281821 172 DFNGAASSLERAQRiAPREPQVLFRLAQVRLSQGDAAQSEQLARRALTYangRPDlQAQLWNTIAQAREKQGDSAGA 248
Cdd:COG4785   55 AAALAAERIDRALA-LPDLAQLYYERGVAYDSLGDYDLAIADFDQALEL---DPD-LAEAYNNRGLAYLLLGDYDAA 126
TPR_MalT pfam17874
MalT-like TPR region; This entry contains a series of TPR repeats.
 144-257 9.87e-03

MalT-like TPR region; This entry contains a series of TPR repeats.


Pssm-ID: 436107 [Multi-domain]  Cd Length: 336  Bit Score: 36.91  E-value: 9.87e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655281821  144 GGGLSADEQLDGPVLaLLTTAQQQqgsGDFNGAASSLERAQRIAPREPQVLFRLA-----QVR--LSQGDAAQSEQLARR 216
Cdd:pfam17874 152 GRQWEPDAAVDAYVL-LARIALAQ---GELEEALTLLRRAELLARQSFFHVDWLAnaervRVRlwLARGDLRAAVRWLRA 227

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 655281821  217 ALTYANGRPDLQAQLWNTIAQAREKQGDSAGA--------ALARQKARV 257
Cdd:pfam17874 228 AEPPSDADNHFLERELRNLARVLLALGRFDDAlsllerlqNLAEQLGRV 276
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH