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Conserved domains on  [gi|655375429|ref|WP_028780857|]
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MULTISPECIES: molybdate ABC transporter permease subunit [Shewanella]

Protein Classification

molybdate ABC transporter permease( domain architecture ID 10793250)

molybdate ABC transporter permease is the transmembrane subunit (TM) found in periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter for molybdenum, and is responsible for the translocation of the substrate across the membrane

Gene Symbol:  modB
Gene Ontology:  GO:0055052|GO:0015689|GO:0043190|GO:0140359|GO:0042626|GO:0016020
PubMed:  11421278|25750732|24638992|18535149|17723295
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 1.33e-141

molybdate ABC transporter permease subunit;


:

Pssm-ID: 181841  Cd Length: 229  Bit Score: 395.06  E-value: 1.33e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   1 MLTDYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLY 80
Cdd:PRK09421   2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  81 DTFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:PRK09421  82 EWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655375429 161 GEFGSTITFVSNIPGETRTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRAQQRTLG 228
Cdd:PRK09421 162 GEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLGA 229
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 1.33e-141

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 395.06  E-value: 1.33e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   1 MLTDYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLY 80
Cdd:PRK09421   2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  81 DTFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:PRK09421  82 EWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655375429 161 GEFGSTITFVSNIPGETRTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRAQQRTLG 228
Cdd:PRK09421 162 GEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLGA 229
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 2-225 8.29e-104

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 299.27  E-value: 8.29e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   2 LTDYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYD 81
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  82 TFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLG 161
Cdd:COG4149   81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 655375429 162 EFGSTITFVSNIPGETRTIPLAMYSFIETpGAEAEAARLCVIAILISLASLIASQWLSKRAQQR 225
Cdd:COG4149  161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 11-221 3.94e-81

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 241.38  E-value: 3.94e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   11 LLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGgWLYDTFGFSFSFS 90
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   91 WRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGSTITFV 170
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 655375429  171 SNIPGETRTIPLAMYSFIEtpGAEAEAARLCVIAILISLASLIASQWLSKR 221
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNKR 208
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 10-212 3.46e-21

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 86.95  E-value: 3.46e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  10 LLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDTFGfsfsf 89
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  90 swrgAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGSTITF 169
Cdd:cd06261   76 ----ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 655375429 170 VSNIPGETRTIPLAMYSFIETpgaeAEAARLCVIAILISLASL 212
Cdd:cd06261  152 GGGEAPGPGTGLLLIFAILFP----GDLGVAAAVALILLLLSL 190
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 13-179 3.83e-17

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 76.05  E-value: 3.83e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  13 SLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWlydtfgfSFSFSWR 92
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  93 GAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTIsLPLTAPGIVSGMVLAFARSLGEFGSTITFVSN 172
Cdd:NF038017  74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGN 152


                 ....*..
gi 655375429 173 IPGETRT 179
Cdd:NF038017 153 IRGYTRV 159
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 24-221 1.47e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.08  E-value: 1.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   24 SLPLGILCAwvlARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLydtfgfsfsfswrGAALAAAVVSF 103
Cdd:pfam00528   1 GIPLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGIL-------------PAIILALLGWA 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  104 PLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFgSTITFVSNIPGETRTIPLA 183
Cdd:pfam00528  65 GYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA-VLLEFLGSWPGLGLLLIEA 143

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 655375429  184 MYSFIETPGAEAEAArLCVIAILISLASLIASQWLSKR 221
Cdd:pfam00528 144 ILGYDYPEIQGPVLA-AALILLLLNLLVDILQRLLDPR 180
 
Name Accession Description Interval E-value
modB PRK09421
molybdate ABC transporter permease subunit;
1-228 1.33e-141

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 395.06  E-value: 1.33e-141
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   1 MLTDYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLY 80
Cdd:PRK09421   2 ILSDPEWQAVLLSLKVSSVAVLFSLPFGILVAWLLARCRFPGKSLLDSLLHLPLVLPPVVTGYLLLISMGRRGFIGQWLY 81

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  81 DTFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:PRK09421  82 EWFGISFAFSWRGAALAAAVMAFPLMVRAIRLSLEAVDRKLEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSL 161

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655375429 161 GEFGSTITFVSNIPGETRTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRAQQRTLG 228
Cdd:PRK09421 162 GEFGATITFVSNIPGETQTIPSAMYTLIQTPGGESAAARLCIISIAIALASLLLSEWLARRSRKRLGA 229
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 2-225 8.29e-104

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 299.27  E-value: 8.29e-104
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   2 LTDYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYD 81
Cdd:COG4149    1 LSPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTVLGFYLLLLFGRNGPLGQLLEE 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  82 TFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLG 161
Cdd:COG4149   81 LFGISLVFTWTGAVLASVVVSLPLMVQPLRAAFEAVDPRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFARALG 160

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 655375429 162 EFGSTITFVSNIPGETRTIPLAMYSFIETpGAEAEAARLCVIAILISLASLIASQWLSKRAQQR 225
Cdd:COG4149  161 EFGATLMFAGNIPGKTQTLPLAIYDAVEA-GDYAAAHALSLILLAISFVVLLLLNLLNRRRRRR 223
modB_ABC TIGR02141
molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, ...
 11-221 3.94e-81

molybdate ABC transporter, permease protein; This model describes the permease protein, ModB, of the molybdate ABC transporter. This system has been characterized in E. coli, Staphylococcus carnosus, Rhodobacter capsulatus and Azotobacter vinlandii. Molybdate is chemically similar to sulfate, thiosulfate, and selenate. These related substrates, and sometimes molybdate itself, can be transported by the homologous sulfate receptor. Some apparent molybdenum transport operons include a permease related to this ModB, although less similar than some sulfate permease proteins and not included in this model. [Transport and binding proteins, Anions]


Pssm-ID: 273993 [Multi-domain]  Cd Length: 208  Bit Score: 241.38  E-value: 3.94e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   11 LLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGgWLYDTFGFSFSFS 90
Cdd:TIGR02141   1 WLSLKVAVIATLLLLPLGIPVAWLLARSRFRGKPLLEVLVTLPLVLPPTVLGFYLLIAFGPNGPIG-KLLELFGISLVFT 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   91 WRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGSTITFV 170
Cdd:TIGR02141  80 FTGAVLASVIVSFPLMVQPIRAAFEAVDPDLEEAARTLGASESQTFLKVTLPLAFPGLLAGAVLSFARALGEFGATLMFA 159

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 655375429  171 SNIPGETRTIPLAMYSFIEtpGAEAEAARLCVIAILISLASLIASQWLSKR 221
Cdd:TIGR02141 160 GNIPGETQTIPLAIYDAVE--SDYELAHQLSLVLLAISLIVLLLVELLNKR 208
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 2-223 9.67e-64

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 199.21  E-value: 9.67e-64
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   2 LTDYEV-AALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLy 80
Cdd:COG0555   47 LTSPRVlAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGWLGQLL- 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  81 DTFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:COG0555  126 APLGIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFARAL 205

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 655375429 161 GEFGSTITFVSNIPGETRTIPLAMYSFIETpGAEAEAARLCVIAILISLASLIASQWLSKRAQ 223
Cdd:COG0555  206 GEFGAVIFIAGNLPMKTEILPLLIYLKLEE-GDYAGATAIALVLLLISFLLLLLINLLQRRSR 267
Mo_ABC_porter TIGR01581
NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively ...
 2-195 2.16e-49

NifC-like ABC-type porter; This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.


Pssm-ID: 130643  Cd Length: 225  Bit Score: 161.03  E-value: 2.16e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429    2 LTDYEV-AALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLy 80
Cdd:TIGR01581  14 LTDPENiKALRLSLATSLASLLLAVIIGIPTAYVLARVRFPLKKLLDTLLDLPMVLPPLVAGLALLLLFGRNGLLGPYL- 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   81 DTFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:TIGR01581  93 EAAGIQVIFSTLGVVLAQTFVASPYYVRVARSTFKSVDPRYEDVARSLGAGPLETFRKITLPMARPGLLAGLVLAWARAL 172

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 655375429  161 GEFGSTITFVSNIPGETRTIPLAMYSFIETPGAEA 195
Cdd:TIGR01581 173 GEFGATLMFAGSIQGKTRTLPLAIYLNIQSDNIEA 207
3a0106s02 TIGR00969
sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and ...
 7-207 4.25e-44

sulfate ABC transporter, permease protein; This model describes a subfamily of both CysT and CysW, paralogous and generally tandemly encoded permease proteins of the sulfate ABC transporter. [Transport and binding proteins, Anions]


Pssm-ID: 273370  Cd Length: 271  Bit Score: 149.04  E-value: 4.25e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429    7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLyDTFGFS 86
Cdd:TIGR00969  59 VSAYNLTLLMALIAVPLNGVFGLLIAWVLTRYQFPGRKLLDALIDLPFALSPVVAGLTLALLYGSNGWLGSWL-ASFGIQ 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   87 FSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGST 166
Cdd:TIGR00969 138 IIFTWPGMALAMIFVSLPFVVREVQPVLEELGTEAEEAAATLGASGWQTFWRVTLPSIRWALLYGVVLTFARALGEFGAV 217

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....
gi 655375429  167 ITFVSNIPGETRTIPLAMYSFIE---TPGAEAEAARLCVIAILI 207
Cdd:TIGR00969 218 VVVSGNIPGKTLTLPLLIEERLEqydYPGAYVIAAVLLLVSLVT 261
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 7-225 1.31e-43

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 147.18  E-value: 1.31e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLydtfgfs 86
Cdd:COG1177   60 LDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVVPGIVLGVALLLLFSALGLSGGLW------- 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  87 fsfswrGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGST 166
Cdd:COG1177  133 ------GLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLIAPGILAGALLAFTLSFDEFVIT 206

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 655375429 167 ItFVSniPGETRTIPLAMYSFIETpGAEAEAARLCVIAILISLASLIASQWLSKRAQQR 225
Cdd:COG1177  207 L-FLA--GPGVTTLPVYIYSMIRR-GISPEINALSTLLILLSLLLLLLAERLRRRGERR 261
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-228 4.80e-41

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 146.46  E-value: 4.80e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDTFGFSFS 88
Cdd:COG1178   55 ALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPNGLLNTLLRALFGLEPP 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  89 --FSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGSt 166
Cdd:COG1178  135 diYGLGGIILVLVLFNYPYVYLLLRAALRSIDASLEEAARSLGASPWRAFRRVTLPLLRPAIAAGALLVFLLCLADFGT- 213

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 655375429 167 itfVSNIPGETRTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRAQQRTLG 228
Cdd:COG1178  214 ---PLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALVLLLLVLLLLLLERRLRRRRRYATVG 272
cysT CHL00187
sulfate transport protein; Provisional
 7-190 1.43e-40

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 138.61  E-value: 1.43e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLyDTFGFS 86
Cdd:CHL00187  54 LSAYSLTLSMALIAALINGFFGLLIAWVLVRYNFPGKRLLDAAVDLPFALPTSVAGLTLATVYGDNGWIGHLL-SHLGIQ 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  87 FSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGST 166
Cdd:CHL00187 133 IVFTKLGVLLAMIFVSFPFVVRTIQPVLQEIEKELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEYGSI 212

                        170       180
                 ....*....|....*....|....
gi 655375429 167 ITFVSNIPGETRTIPLAMYSFIET 190
Cdd:CHL00187 213 VIISSNIPFKDLVASVLIFQSLEQ 236
permease_CysT TIGR02139
sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two ...
 7-221 6.61e-37

sulfate ABC transporter, permease protein CysT; This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 131194  Cd Length: 265  Bit Score: 130.14  E-value: 6.61e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429    7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDtFGFS 86
Cdd:TIGR02139  49 LAAYKLSFGTALIAALINAVFGTLLAWVLVRYRFPGKRIVDALVDLPFALPTAVAGIALATLYSPNGWIGSFLAP-LGIK 127

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   87 FSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGST 166
Cdd:TIGR02139 128 IAFTPLGIVIALVFVSLPFVVRTVQPVLEEIEKELEEAAASLGASRWQTFWRVILPALLPALLTGFALAFARAVGEYGSV 207

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 655375429  167 ITFVSNIPGETRTIPLAMYSFIET---PGAEAEAARLCVIAILISLASLIASQWLSKR 221
Cdd:TIGR02139 208 IFIAGNLPMKTEIAPLLIFQKLEQydyAGATAIASVMLIISFVILLFINLLQWWALRY 265
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
7-229 1.32e-35

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 127.18  E-value: 1.32e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDtFGFS 86
Cdd:PRK10971  57 VAAYKVTLLSAFVASIFNAVFGLLMAWILTRYRFPGRTLLDALMDLPFALPTAVAGLTLASLFSVNGWYGEWLAK-FDIK 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  87 FSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGST 166
Cdd:PRK10971 136 VTYTWLGIAVAMAFTSIPFVVRTVQPVLEELGPEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEFGAV 215

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 655375429 167 ITFVSNIPGETRTIPLAMYSFIETPGAEAEAARLCVIaILISLASLIASQWLSKRAQQRTLGQ 229
Cdd:PRK10971 216 IFIAGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVI-LAASLLLLFSINTLQSRFGRRVVGH 277
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
9-221 6.68e-31

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 118.72  E-value: 6.68e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVV--IGYLLLVSmgrsGFLGGWLYDTFGfs 86
Cdd:COG1178  339 ALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVlgLGLLLLFN----RPLPLLLYGTLA-- 412

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  87 fsfswrGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGST 166
Cdd:COG1178  413 ------ILVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALLVFVTSMKELSAT 486

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 655375429 167 ITFVsniPGETRTIPLAMYSFIETpGAEAEAARLCVIAILISLASLIASQWLSKR 221
Cdd:COG1178  487 LLLR---PPGFETLAVLIYQLASS-GRYGEAAALALLLVLVSLLPVLLLERLLGR 537
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
9-225 3.10e-28

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 107.92  E-value: 3.10e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLyDTFGFSFS 88
Cdd:PRK11602  65 AIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLLLTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWL-DEHNLQLM 143

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  89 FSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGSTIT 168
Cdd:PRK11602 144 FSWPGMVLVTIFVTCPFVVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEFGAVSV 223

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429 169 FVSNIPGETRTIPLA---MYSFIETPGAEAEAARLCVIAIlISLASLIASQWLSKRAQQR 225
Cdd:PRK11602 224 VSGSIRGETLSLPLQielLEQDYNTVGSFTAAALLTLMAI-ITLFLKSMLQWRLENQEKR 282
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 9-225 1.27e-27

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 106.38  E-value: 1.27e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYdTFG---- 84
Cdd:COG1176   68 VLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLLLLVILPFWTSFLVRTYAWIVLLGRNGLLNSLLL-ALGlide 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  85 -FSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEF 163
Cdd:COG1176  147 pLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKIDPSLLEAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAF 226

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 655375429 164 GstitfVSNI--PGETRTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRAQQR 225
Cdd:COG1176  227 V-----TPALlgGGKVLMIGNLIYQQFLSALNWPLAAALAVVLLLIVLLVLLLYLRLLRRRRLL 285
TupA COG4662
ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and ...
 7-225 6.73e-25

ABC-type tungstate transport system, periplasmic component [Inorganic ion transport and metabolism];


Pssm-ID: 443699 [Multi-domain]  Cd Length: 232  Bit Score: 97.87  E-value: 6.73e-25
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLG--GWLydtfg 84
Cdd:COG4662   23 WEIVLLSLRVSLTATLIAALIGLPLGALLALKRFPGRRLVISLLNTLMGLPPVVVGLLVYLLLSRSGPLGflGLL----- 97

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  85 fsfsFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTIsLPLTAPGIVSGMVLAFARSLGEFG 164
Cdd:COG4662   98 ----FTPTAMIIAQTVLALPIVAALTRAAVEDLDRRLRETLRSLGASRLQALLTL-LWEARFGLLAAVLAGFGRAISEVG 172

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 655375429 165 STITFVSNIPGETRTIPLAMYsfIETP-GAEAEAARLCVIAILISLASLIASQWLSKRAQQR 225
Cdd:COG4662  173 AVMMVGGNIKGYTRVMTTAIA--LETSkGEFALAIALGIVLLAIALLVNALLSLLQGRGRRR 232
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 10-212 3.46e-21

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 86.95  E-value: 3.46e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  10 LLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDTFGfsfsf 89
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLP----- 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  90 swrgAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGSTITF 169
Cdd:cd06261   76 ----ALILALLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFL 151

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|...
gi 655375429 170 VSNIPGETRTIPLAMYSFIETpgaeAEAARLCVIAILISLASL 212
Cdd:cd06261  152 GGGEAPGPGTGLLLIFAILFP----GDLGVAAAVALILLLLSL 190
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 7-221 2.67e-19

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 83.50  E-value: 2.67e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVsmgrsgflggwLYDTFGFS 86
Cdd:PRK09500  56 LQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMSPDIVMAISLLV-----------LFMLLGIQ 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  87 FSFsWrgaALAAAVVSF--PLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFG 164
Cdd:PRK09500 125 LGF-W---SLLFAHITFclPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLSLDDVV 200

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 655375429 165 STiTFVSNIPGEtrTIPLAMYSFIETpGAEAEAARLCVIAILISLASLIASQWLSKR 221
Cdd:PRK09500 201 VS-SFVTGPSYE--ILPLKIYSMVKV-GVSPEVNALATILLVLSLVLVILSQLLARD 253
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 9-188 5.07e-19

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 83.22  E-value: 5.07e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIG---YLLLVSMGrsgflggwLYDTFGf 85
Cdd:COG0395   75 YLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQVLLiplYLLFRQLG--------LLNTYW- 145

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  86 sfsfswrGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGS 165
Cdd:COG0395  146 -------GLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLSKPALATVAIFTFIGAWNDFLW 218

                        170       180
                 ....*....|....*....|...
gi 655375429 166 TITFVSNipGETRTIPLAMYSFI 188
Cdd:COG0395  219 PLILLTS--PDLRTLPVGLASFQ 239
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 13-179 3.83e-17

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 76.05  E-value: 3.83e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  13 SLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWlydtfgfSFSFSWR 92
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLALRRFPGRRLVISLLNTLMGLPPVVVGLIVYLLLSRSGPLGFL-------GLLYTPT 73

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  93 GAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTIsLPLTAPGIVSGMVLAFARSLGEFGSTITFVSN 172
Cdd:NF038017  74 AMIIAQAVLALPIVAGLTLAAVQGLDPELRLQILSLGATRWQALWTL-LKEARFALLAAVLAGFGRAISEVGAVMMVGGN 152


                 ....*..
gi 655375429 173 IPGETRT 179
Cdd:NF038017 153 IRGYTRV 159
PstA COG0581
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 9-226 1.72e-16

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440346 [Multi-domain]  Cd Length: 259  Bit Score: 75.84  E-value: 1.72e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLArlEFPGKSVLDSLIHLPLV----LPPVVIG---YLLLVSmgrsgflggwlyd 81
Cdd:COG0581   42 AIVGTLLLVLLATLIAVPLGVLAAIYLA--EYARGGRLARLIRFAIDvlagVPSIVYGlfgYALFVL------------- 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  82 TFGFSFSFSWrgAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLG 161
Cdd:COG0581  107 TLGLGFSLLA--GALALALLMLPVVIRTTEEALRLVPNSLREASYALGATKWQTIRKVVLPAALPGILTGVILAIARAAG 184

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 655375429 162 E-------FGSTITFVSNIPGETRTIPLAMYSFIETPGAEAE----AARLCVIAILISLasLIASQWLSKRAQQRT 226
Cdd:COG0581  185 EtapllftAGVSPFLPLSLFDPFATLPVHIYNLASSPYPAAQelawAAALVLLLLVLLL--NLLARLLRRRFRKKL 258
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 7-164 9.74e-14

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 69.71  E-value: 9.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429    7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWlydtFGFS 86
Cdd:TIGR03262  53 LQSLGNSLTVSAIVTAIVVPLAFAFAYALTRSRIPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQGLLKGL----LGGF 128

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655375429   87 FSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFG 164
Cdd:TIGR03262 129 SIYGFWGIVIGEVFYTFPHALMILVTALSLADGRLYEAARAMGASPWRTFFTVTLPGAKYGLISAAFVVFTLVITDFG 206
PRK10592 PRK10592
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 7-225 2.25e-13

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182574  Cd Length: 281  Bit Score: 67.57  E-value: 2.25e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   7 VAALLLSLKVSTVAVLCSLPLGILCAWVLARL-EFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDTFGF 85
Cdd:PRK10592  62 MSAVGLSLTIAACAATAAAILGTIAAVVMVRFgRFRGSNGFAFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGML 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  86 SFsfsWrgaaLAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFgS 165
Cdd:PRK10592 142 TI---W----LAHVTFCTAYVAVVISSRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDL-V 213

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429 166 TITFVSNiPGETrTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRAQQR 225
Cdd:PRK10592 214 IASFVSG-PGAT-TLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQR 271
3a0107s02c TIGR00974
phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of ...
 9-209 1.22e-12

phosphate ABC transporter, permease protein PstA; This model describes PtsA, one of a pair of permease proteins in the ABC (high affinity) phosphate transporter. In a number of species, this permease is fused with the PtsC protein (TIGR02138). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273373  Cd Length: 271  Bit Score: 65.33  E-value: 1.22e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429    9 ALLLSLKVSTVAVLCSLPLGILCAWVLArlEFPGKSVLDSLIHLPLV----LPPVVIG---YLLLVSMGrsgflggwlyd 81
Cdd:TIGR00974  55 AIVGTLLLTLLAIVIAVPLGIGAAIYLA--EYANGSRFTKIIRFAVDilagVPSIVVGlfgYGFFVLTY----------- 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   82 tfgFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLG 161
Cdd:TIGR00974 122 ---LGGGFSLLAGALALALLILPVIIRTTEEALKAVPKDLREASLALGATKWQTIFKVVLPAALPGILTGIILSIARAAG 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 655375429  162 E-------FGSTITFVSNIPGETRTIPLAMYSFIeTPGAEAEAARLCVIAILISL 209
Cdd:TIGR00974 199 EtapllftAGGSAFTPPNLFDPFATLPVLIYNLA-SEGPYVEAQQLAWAAALVLI 252
phosphate_pstC TIGR02138
phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity ...
 8-223 1.52e-12

phosphate ABC transporter, permease protein PstC; The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions]


Pssm-ID: 273992 [Multi-domain]  Cd Length: 295  Bit Score: 65.37  E-value: 1.52e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429    8 AALLLSLKVSTVAVLCSLPLGILCAWVLARLEFP-GKSVLDSLIHLPLVLPPVVIGYLLLVSMGR--SGFLGGWLYDTFG 84
Cdd:TIGR02138  63 PLIVGTLITSLIALLIAVPVGIGIAIFLSEIAPKrVRSVLKPVVELLAGIPSVVYGFWGLFVLVPflKPHFQPFLGSNLG 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   85 FSFSFSwrGAALAAAVVSF----PLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:TIGR02138 143 LIPLFG--GPILTAGIVLAimilPTIASISRDALRAVPRSYKEASYALGATKWETIRRVILPAARSGIVGAVVLGLGRAL 220

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 655375429  161 GEF--------GSTITFVSNI--PGETRTIPLAMySFIETPGAEAEAARLCVIAI---LISLASLIASQWLSKRAQ 223
Cdd:TIGR02138 221 GETmavtmvigNVFPISPLSLfdPGTTITSLIAN-QFGEASGGSVHTSALFALGLvlfVITLLVNILARYIVRRRR 295
PstC COG0573
ABC-type phosphate transport system, permease component [Inorganic ion transport and ...
 13-225 1.63e-12

ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440338 [Multi-domain]  Cd Length: 303  Bit Score: 65.11  E-value: 1.63e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  13 SLKVSTVAVLCSLPLGILCAWVLArlEF---PGKSVLDSLIHLPLVLPPVVIGYLLLVsmgrsgFLGGWLYDTFGFS-FS 88
Cdd:COG0573   82 TLLVSLIALLIAVPLGLGIAIFLS--EYappRLRRILKPAIELLAGIPSVVYGFWGLF------VLVPLLRDLFPWPpSG 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  89 FSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGE------ 162
Cdd:COG0573  154 FSLLTAGIVLAIMILPTITSLSRDALRAVPRSLREAALALGATRWETIRKVVLPAARSGIIAAVILGLGRALGEtmavlm 233

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 655375429 163 -FGSTITFVSNIPGETRTIP--LAMySFIETPGAEAEAARLCVIAI---LISLASLIASQWLSKRAQQR 225
Cdd:COG0573  234 vAGNAPQIPFSLFDPGRTLTalIAL-EFGEAPFGSLHYSALFALGLvlfVITLLVNLLARLIVRRYREK 301
PRK15050 PRK15050
2-aminoethylphosphonate transport system permease PhnU; Provisional
 9-222 1.69e-12

2-aminoethylphosphonate transport system permease PhnU; Provisional


Pssm-ID: 237888 [Multi-domain]  Cd Length: 296  Bit Score: 65.41  E-value: 1.69e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDTFG---- 84
Cdd:PRK15050  74 ALLTTLQIAFASTAGCLVLGVLLALVLAFVPFPGASLVGRFIDTFVAFPSFLITLAFTFLYGSAGSVNIALQRLFGleap 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  85 -FSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEF 163
Cdd:PRK15050 154 pLDFLYSPGGVILAEITFYTPFVVRPLLAAFAQLDARQLEAAASLGASPWRVARRVILPEAWPALAAGGSLCLLLTLNEF 233

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 655375429 164 GstITFVSNIPGETrTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRA 222
Cdd:PRK15050 234 G--IVLFTGAKDVV-TLPVLIYSKAIVDFDYPTACAIAVVNLALSLGLYALYRRVNRRA 289
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
1-221 1.28e-10

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 59.76  E-value: 1.28e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   1 MLTDYEV-AALLLSLKVSTVAVLCSLPLGILCAWVLARLeFPGKSVLDSLIHLPLVLPPVVIGYL-LLVSMGRSGFLGGW 78
Cdd:COG1175   68 LFTDPRFwNALGNTLLFTVVSVPLQLVLGLLLALLLNRK-LRGRGFFRTLFFLPWVISPVVVALIwKWLFNPDYGLLNAL 146

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  79 LyDTFGFSfSFSW---RGAALAAAVV-----SFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVS 150
Cdd:COG1175  147 L-GALGLE-PINWlgdPSLALPAVIIvtvwkGTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLPLLRPTILF 224

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 655375429 151 GMVLAFARSLGEFGSTITFVSNIPG-ETRTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKR 221
Cdd:COG1175  225 VLVLSTIGALQVFDLVYVLTGGGPGnSTTTLVLYIYQTAFQQFDFGYASAIAVVLFLIILVLTLLQLRLLRR 296
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 24-221 1.47e-10

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 58.08  E-value: 1.47e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   24 SLPLGILCAwvlARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLydtfgfsfsfswrGAALAAAVVSF 103
Cdd:pfam00528   1 GIPLGIIAA---LRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGIL-------------PAIILALLGWA 64

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  104 PLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFgSTITFVSNIPGETRTIPLA 183
Cdd:pfam00528  65 GYARLIRRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGA-VLLEFLGSWPGLGLLLIEA 143

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 655375429  184 MYSFIETPGAEAEAArLCVIAILISLASLIASQWLSKR 221
Cdd:pfam00528 144 ILGYDYPEIQGPVLA-AALILLLLNLLVDILQRLLDPR 180
COG4132 COG4132
ABC-type uncharacterized transport system, permease component [General function prediction ...
 1-222 7.76e-10

ABC-type uncharacterized transport system, permease component [General function prediction only];


Pssm-ID: 443307 [Multi-domain]  Cd Length: 286  Bit Score: 57.51  E-value: 7.76e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   1 MLTDYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPG-KSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWL 79
Cdd:COG4132   56 LTSPFYLQAFWNSIWLSLASALIGAVIGLLLAYALRRGGPGWlRRAVLAFSGVASNFAGVPLAFAFIATLGRNGLVTLLL 135

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  80 yDTFGFSFS-----FSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVL 154
Cdd:COG4132  136 -KQLGIDLYdgfnlYSFWGLILVYLYFQIPLMVLLLYPALDGLRREWREAAALLGASRWQYWRRVALPVLAPSLLGTFLL 214

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 655375429 155 AFARSLGEFGSTITFVS---NIpgetrtIPLAMYSFI--ETPGAEAEAARLCVIAILISLASLIASQWLSKRA 222
Cdd:COG4132  215 LFANAFGAYATAYALTGgnyNL------VPIRIGALIsgDVLLDPNLGAALALGMIVIMALVMALYQWLQRRS 281
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 10-163 1.39e-09

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 56.62  E-value: 1.39e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  10 LLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYDTFGFS--- 86
Cdd:PRK09497  65 LLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDtpi 144

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 655375429  87 -FSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEF 163
Cdd:PRK09497 145 rIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKPLLEAARDLGANKLQTFIRIIIPLTMPGIIAGCLLVLLPAMGMF 222
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 4-223 6.15e-09

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 55.31  E-value: 6.15e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429    4 DYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLgGWLYDTF 83
Cdd:TIGR01253  43 DYLQHLILFSFGQAFLSALLSIFFAIFLARALFRKPFLGKKALLKLCALTFILPALVAIFGIIGIYGRQGWL-ATLANLF 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   84 GFSFSFS---WRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:TIGR01253 122 GLEWQFHiygLQGILIAHLFFNIPLAAQLFLQALENIPGEQRQLAAQLGLQGWHFFKFVEWPVFRQQCLPTAALIFMLCF 201

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 655375429  161 GEFGSTITFVSNipGETRTIPLAMYSFIETPGAEAEAARLCVIAILISLASLIASQWLSKRAQ 223
Cdd:TIGR01253 202 ASFATVLSLGGG--PQATTIELAIYQAILFDFDLAKAALFALLQFVCCLGLFLLSQRFSKAIA 262
PRK10683 PRK10683
putrescine transporter subunit: membrane component of ABC superfamily; Provisional
 9-163 7.26e-09

putrescine transporter subunit: membrane component of ABC superfamily; Provisional


Pssm-ID: 182646  Cd Length: 317  Bit Score: 54.72  E-value: 7.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLYdtfgfsfs 88
Cdd:PRK10683  98 AYLQSLQVAAISTLCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKNNGVLNNFLL-------- 169

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  89 fsWRG-------------AALAAAVVSF-PLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVL 154
Cdd:PRK10683 170 --WLGvidqpltilhtnlAVYIGIVYAYlPFMVLPIYTALTRIDYSLVEAALDLGARPLKTFFSVIVPLTKGGIIAGSML 247


                 ....*....
gi 655375429 155 AFARSLGEF 163
Cdd:PRK10683 248 VFIPAVGEF 256
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 8-160 1.45e-08

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 53.61  E-value: 1.45e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   8 AALLLSLKVSTVAVLCSLPLGILCAWVLARLEFpGKSVLDSLIHLPLVLPPVVIGYLLLVsmgrsgflggWlydtfgfsF 87
Cdd:COG0600   61 EHLLASLLRVLLGFALAALLGVPLGLLLGLSRL-LRRLLDPLLVFLRPIPPLALAPLLIL----------W--------F 121

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 655375429  88 SFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSL 160
Cdd:COG0600  122 GIGEASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIFTGLRIALGLAW 194
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 4-142 3.09e-07

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 50.22  E-value: 3.09e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   4 DYEVAALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLyDTF 83
Cdd:PRK09433  40 SYLWHVLRFSFWQAFLSALLSVLPAIPLARALYRRRFPGRGLLLRLCAMTLVLPVLVAVFGLLSVYGRSGWLAQLL-QAL 118

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 655375429  84 GFSFSFS---WRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLP 142
Cdd:PRK09433 119 GLEWPFSiygLQGILLAHVFFNLPLATRLLLQALESIPAEQRQLAAQLGMRGWQFFRLVEWP 180
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 8-161 4.11e-07

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 49.87  E-value: 4.11e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   8 AALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLydtfgfsf 87
Cdd:COG4135  356 EPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLLVPQIAFLFGLQVLLLRLGLDGTWL-------- 427

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 655375429  88 sfswrGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLG 161
Cdd:COG4135  428 -----AVIWAHLVFVLPYVFLSLAGPWRALDPRYAQVAASLGASPWRVFWRVKLPLLLRPILTAAAVGFAVSVA 496
malG PRK10998
maltose ABC transporter permease MalG;
13-218 2.28e-06

maltose ABC transporter permease MalG;


Pssm-ID: 182891  Cd Length: 296  Bit Score: 47.40  E-value: 2.28e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  13 SLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIHLPLVLPPVVIGYLLLVSMGRSGFLGGWLydtfgfsfSFSWR 92
Cdd:PRK10998  88 SVKVAGITAIGIVALSTTCAYAFARMRFKGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFI--------GLNTH 159

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  93 GAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLGEFGSTITFVSN 172
Cdd:PRK10998 160 GGVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVVFILSFIAAITEVPVASLLLRD 239

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 655375429 173 IpgETRTIPLAMYSFIETP----GAEAEAARLCviAILISLASLIASQWL 218
Cdd:PRK10998 240 V--NSYTLAVGMQQYLNPQnylwGDFAAAAVLS--AIPITVVFLLAQRWL 285
pstA PRK11268
phosphate ABC transporter permease PstA;
9-162 3.06e-06

phosphate ABC transporter permease PstA;


Pssm-ID: 183065 [Multi-domain]  Cd Length: 295  Bit Score: 46.99  E-value: 3.06e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLArlEFPGKSVLDSLIH----LPLVLPPVVIG---YLLLVSmgRSGFLGGWlyd 81
Cdd:PRK11268  82 AIAGSGLLILWATVVGTPLGIMAGIYLA--EYGRKSWLAEVIRfindILLSAPSIVVGlfvYTIVVA--QMEHFSGW--- 154

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  82 tfgfsfsfswrGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLG 161
Cdd:PRK11268 155 -----------AGVIALALLQIPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGVLLAIARIAG 223


                 .
gi 655375429 162 E 162
Cdd:PRK11268 224 E 224
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 9-221 1.88e-03

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 39.05  E-value: 1.88e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429   9 ALLLSLKVSTVAVLCSLPLGILCAWVLARLEFPGKSVLDSLIH----LPLVLPPVVIG---YLLLVSmgrsgflggwlyd 81
Cdd:PRK09433 320 ALWTSLRIALAAALLAVVLTMMLLWSSRELRLRQRKLAAQALElsgmLILAMPGIVLAtglFLLLRN------------- 386

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 655375429  82 tFGFSFSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGMVLAFARSLG 161
Cdd:PRK09433 387 -TTDLPASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQSLGIRGWSRLRLIELRALRRPLAQAFAFACALSLG 465

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 655375429 162 EFGSTITFVSNipgETRTIPLAMYSFIetpGA--EAEAARLCVIAILISLASLIASQWLSKR 221
Cdd:PRK09433 466 DFGVIALFGSQ---DFRTLPFLLYQQL---GSyrSQDAAVTALLLLLLCLLLFTLIERLPGR 521
OpuBB COG1174
ABC-type proline/glycine betaine transport system, permease component [Amino acid transport ...
 87-152 2.70e-03

ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440787 [Multi-domain]  Cd Length: 212  Bit Score: 37.73  E-value: 2.70e-03
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 655375429  87 FSFSWRGAALAAAVVSFPLMVRAIRQALEGVDVRLEQAARTLGAGRLKVFFTISLPLTAPGIVSGM 152
Cdd:COG1174   78 LGIGPAPAIIALVLYALLPILRNTYTGLRSVDPAVVEAARGMGMTPWQRLWRVELPLALPVILAGI 143
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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