|
Name |
Accession |
Description |
Interval |
E-value |
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
53-404 |
2.01e-27 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 112.63 E-value: 2.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 53 KFGLIFIVIAMFVFYYYKIKLFSLIITLISNLIMYLSNFLAVSFYLTMVNIFPKSQILVIFHFILFYSIALLLAYFIRTL 132
Cdd:COG3290 3 LLLLLLLLLLILLILILILLLLLLIILLLILLLVLLLLLFLLFVIILLLLLLILLLILLLLLLLLLAALLLKLLEEIARL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 133 LKKLKESYLSLNKTYITIIS--VVLSFSFVFFYIISQTDMSAPNSLRLYAIVFVGLIIFLSIIIFILSMFTLREMRYK-- 208
Cdd:COG3290 83 VEEREAVLESIREGVIAVDRdgRITLINDAARRLLGLDAIGRPIDEVLAEVLETGERDEEILLNGRVLVVNRVPIRDDgr 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 209 --------RNLQEIETYYEYTLKIESINNEMRKFRHDYVNILSTMSEFIREDDMPGLRQYFNEqivpMKDNLQTRSLKLn 280
Cdd:COG3290 163 vvgavatfRDRTELERLEEELEGVKELAEALRAQRHDFRNHLHTISGLLQLGEYDEALEYIDE----ISEELQELIDSL- 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 281 gIEKLKVREIKGLITTKILQAQEKEIAISIEVPDNIERIDMNTIELSRIIGITLDNAIEASEPLDDS--LIRIAFFKEEE 358
Cdd:COG3290 238 -LSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLPLSDTDLVTILGNLLDNAIEAVEKLPEEerRVELSIRDDGD 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 656016155 359 SVTLIIMNKCDDDIPRVHE-LFEEGFSTK-GKNRGLGLSTLKEITDNN 404
Cdd:COG3290 317 ELVIEVEDSGPGIPEELLEkIFERGFSTKlGEGRGLGLALVKQIVEKY 364
|
|
| HATPase_AgrC-ComD-like |
cd16935 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
290-424 |
5.78e-22 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.
Pssm-ID: 340412 [Multi-domain] Cd Length: 134 Bit Score: 91.10 E-value: 5.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 290 IKGLITTKILQAQEKEIAISIEVPDNIErIDMNTIELSRIIGITLDNAIEASE--PLDDSLIRIAFFKEEESVTLIIMNK 367
Cdd:cd16935 2 LDSLLSEKLELAREKGIEFTIEIDIPIL-LPISPLDLCIIFGNLLDNAIEACAkiDKENRFIHLKIRQKKGFLIISIENS 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 656016155 368 CDDDIPRVHELFEEgfSTKGKNRGLGLSTLKEITdNNENVLLDTVIENGFFVQKIEI 424
Cdd:cd16935 81 YEGELKKKNGLFLS--TKKDKNHGIGLKSIREIV-KKYNGNLSIEYENGIFTLSILL 134
|
|
| HATPase_c_5 |
pfam14501 |
GHKL domain; This family represents the structurally related ATPase domains of histidine ... |
321-424 |
1.90e-20 |
|
GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 433996 [Multi-domain] Cd Length: 102 Bit Score: 85.73 E-value: 1.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 321 MNTIELSRIIGITLDNAIEASEPLDD-SLIRIAFFKEEESVTLIIMNKCDDDIPRVHELFEegFSTKGKNRGLGLSTLKE 399
Cdd:pfam14501 1 ISDVDLCVIFGNLLDNAIEACSKIDDnRFIRLKIREKQNFLIIRIENTYEGELKFEGKLPS--TKTKGDGHGIGLKSIRR 78
|
90 100
....*....|....*....|....*
gi 656016155 400 ITDNNENvLLDTVIENGFFVQKIEI 424
Cdd:pfam14501 79 IVKKYGG-NLSTEIENGIFTLSILL 102
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
282-399 |
6.40e-07 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 51.45 E-value: 6.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 282 IEKLKVREIKGLITTKILQAQEKEIAISI----EVPDNI-ERIdmnTIELSRIIGITLDNAIEASEPLDDSLIRIAFFKE 356
Cdd:PRK11086 388 LGKIKSPVIAGFLLGKISRARELGITLIIsedsQLPDSGdEDQ---VHELITILGNLIENALEAVGGEEGGEISVSLHYR 464
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 656016155 357 EESVTLIImnkcDDDIP-----RVHELFEEGFSTKGKNRGLGLSTLKE 399
Cdd:PRK11086 465 NGWLHCEV----SDDGPgiapdEIDAIFDKGYSTKGSNRGVGLYLVKQ 508
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
324-402 |
1.85e-04 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 40.71 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 324 IELSRIIGITLDNAIEASEPldDSLIRIAFFKEEESVTLIIMnkcdDD---IPR--VHELFEEGFSTKGKNR-----GLG 393
Cdd:smart00387 4 DRLRQVLSNLLDNAIKYTPE--GGRITVTLERDGDHVEITVE----DNgpgIPPedLEKIFEPFFRTDKRSRkiggtGLG 77
|
....*....
gi 656016155 394 LSTLKEITD 402
Cdd:smart00387 78 LSIVKKLVE 86
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| CitA |
COG3290 |
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction ... |
53-404 |
2.01e-27 |
|
Sensor histidine kinase DipB regulating citrate/malate metabolism [Signal transduction mechanisms];
Pssm-ID: 442519 [Multi-domain] Cd Length: 389 Bit Score: 112.63 E-value: 2.01e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 53 KFGLIFIVIAMFVFYYYKIKLFSLIITLISNLIMYLSNFLAVSFYLTMVNIFPKSQILVIFHFILFYSIALLLAYFIRTL 132
Cdd:COG3290 3 LLLLLLLLLLILLILILILLLLLLIILLLILLLVLLLLLFLLFVIILLLLLLILLLILLLLLLLLLAALLLKLLEEIARL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 133 LKKLKESYLSLNKTYITIIS--VVLSFSFVFFYIISQTDMSAPNSLRLYAIVFVGLIIFLSIIIFILSMFTLREMRYK-- 208
Cdd:COG3290 83 VEEREAVLESIREGVIAVDRdgRITLINDAARRLLGLDAIGRPIDEVLAEVLETGERDEEILLNGRVLVVNRVPIRDDgr 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 209 --------RNLQEIETYYEYTLKIESINNEMRKFRHDYVNILSTMSEFIREDDMPGLRQYFNEqivpMKDNLQTRSLKLn 280
Cdd:COG3290 163 vvgavatfRDRTELERLEEELEGVKELAEALRAQRHDFRNHLHTISGLLQLGEYDEALEYIDE----ISEELQELIDSL- 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 281 gIEKLKVREIKGLITTKILQAQEKEIAISIEVPDNIERIDMNTIELSRIIGITLDNAIEASEPLDDS--LIRIAFFKEEE 358
Cdd:COG3290 238 -LSRIGNPVLAALLLGKAARARERGIDLTIDIDSDLPDLPLSDTDLVTILGNLLDNAIEAVEKLPEEerRVELSIRDDGD 316
|
330 340 350 360
....*....|....*....|....*....|....*....|....*...
gi 656016155 359 SVTLIIMNKCDDDIPRVHE-LFEEGFSTK-GKNRGLGLSTLKEITDNN 404
Cdd:COG3290 317 ELVIEVEDSGPGIPEELLEkIFERGFSTKlGEGRGLGLALVKQIVEKY 364
|
|
| HATPase_AgrC-ComD-like |
cd16935 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
290-424 |
5.78e-22 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Staphylococcus aureus AgrC and Streptococcus pneumoniae ComD which are involved in quorum sensing; This family includes the histidine kinase-like ATPase (HATPase) domains of various two-component sensor histidine kinase (HKs) including Staphylococcus aureus AgrC which is an HK of the accessory gene regulator (agr) quorum sensing two-component regulatory system (TCS) AgrC-AgrA. The agr system plays a part in the transition from persistent to virulent phenotype. This family also includes Streptococcus pneumoniae ComD HK of the ComD-ComE TCS, involved in quorum sensing and genetic competence.
Pssm-ID: 340412 [Multi-domain] Cd Length: 134 Bit Score: 91.10 E-value: 5.78e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 290 IKGLITTKILQAQEKEIAISIEVPDNIErIDMNTIELSRIIGITLDNAIEASE--PLDDSLIRIAFFKEEESVTLIIMNK 367
Cdd:cd16935 2 LDSLLSEKLELAREKGIEFTIEIDIPIL-LPISPLDLCIIFGNLLDNAIEACAkiDKENRFIHLKIRQKKGFLIISIENS 80
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*..
gi 656016155 368 CDDDIPRVHELFEEgfSTKGKNRGLGLSTLKEITdNNENVLLDTVIENGFFVQKIEI 424
Cdd:cd16935 81 YEGELKKKNGLFLS--TKKDKNHGIGLKSIREIV-KKYNGNLSIEYENGIFTLSILL 134
|
|
| HATPase_c_5 |
pfam14501 |
GHKL domain; This family represents the structurally related ATPase domains of histidine ... |
321-424 |
1.90e-20 |
|
GHKL domain; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 433996 [Multi-domain] Cd Length: 102 Bit Score: 85.73 E-value: 1.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 321 MNTIELSRIIGITLDNAIEASEPLDD-SLIRIAFFKEEESVTLIIMNKCDDDIPRVHELFEegFSTKGKNRGLGLSTLKE 399
Cdd:pfam14501 1 ISDVDLCVIFGNLLDNAIEACSKIDDnRFIRLKIREKQNFLIIRIENTYEGELKFEGKLPS--TKTKGDGHGIGLKSIRR 78
|
90 100
....*....|....*....|....*
gi 656016155 400 ITDNNENvLLDTVIENGFFVQKIEI 424
Cdd:pfam14501 79 IVKKYGG-NLSTEIENGIFTLSILL 102
|
|
| YesM |
COG2972 |
Sensor histidine kinase YesM [Signal transduction mechanisms]; |
16-400 |
2.45e-15 |
|
Sensor histidine kinase YesM [Signal transduction mechanisms];
Pssm-ID: 442211 [Multi-domain] Cd Length: 445 Bit Score: 77.37 E-value: 2.45e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 16 LLFWVAKIIINIKFKLRDYITIIGVIIPSVIMYYYFNKFGLIFIVIAMFVFYYYKIKLFSLIITLISNLIMYLSNFLAVS 95
Cdd:COG2972 25 LLLSLLLIILLLLLLLILLLLLLILLLLLLLLLLLLLLLLLLLLLLLLLLLLLALLLILLLLLLLLLLLILLLSLLLLLA 104
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 96 FYLTMVNIFPKSQILVI---FHFILFYSIALLLAYFIRTLLKKLKESYLSLNKTYITIISVVLSFSFVFFYIISQTDMSA 172
Cdd:COG2972 105 LILLLALLLLLSILLLIlglLLIILLLLSLLGWTLVSLIPKSELFRGLFSLRRLILLIILLLLLLALLLSYLLSRSITRP 184
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 173 PNSLRLYAIVFVGLIIFLSIIIFILSMFTLRE------MRYKRNLQEIETYYEYTLKIESINNEMRKFRHDYVNILSTMS 246
Cdd:COG2972 185 IKRLKKAMKKVEKGDLVRLEVSGNDEIGILARsfnemvERIKELIEEVYELELEKKEAELKALQAQINPHFLFNTLNSIR 264
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 247 EFIREDDMPGLRQYFNEQIVPMKDNLQ-TRSLKLNGIEklkVREIKGLITTKILQAQEKeIAISIEVPDNIeridMNTIE 325
Cdd:COG2972 265 WLAELEDPEEAEEMLEALSKLLRYSLSkGDELVTLEEE---LELIKSYLEIQKLRFGDR-LEVEIEIDEEL----LDLLI 336
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 326 LSRIIGITLDNAIEAS-EPLDDS-LIRIAFFKEEESVTLIIMN---KCDDDipRVHELFEEgFSTKGKNRGLGLSTLKEI 400
Cdd:COG2972 337 PKLILQPLVENAIEHGiEPKEGGgTIRISIRKEGDRLVITVEDngvGMPEE--KLEKLLEE-LSSKGEGRGIGLRNVRER 413
|
|
| BaeS |
COG0642 |
Signal transduction histidine kinase [Signal transduction mechanisms]; |
123-402 |
6.44e-09 |
|
Signal transduction histidine kinase [Signal transduction mechanisms];
Pssm-ID: 440407 [Multi-domain] Cd Length: 328 Bit Score: 57.23 E-value: 6.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 123 LLLAYFIRTLLKKLKESYLSLNKTYITIISVVLSFSFVFFYIISQTDMSAPNSLRLYAIVFVGLIIFLSIIIFILSMFTL 202
Cdd:COG0642 1 LLLLLLLLVLLLLLLLLLLLALLLLLLLLLLLALLLLLALLLLLLLLLLLLLLLALALLALLLLLLLLLLLLLLLLLLLL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 203 REMRYKRNLQEIETYYEYTL-KIESINNEMRKF----RHDY---VNILSTMSEFIREDDMPGLRQYFN---------EQI 265
Cdd:COG0642 81 LLLLLLLLLLLLLLLLLALLlLLEEANEAKSRFlanvSHELrtpLTAIRGYLELLLEELDEEQREYLEtilrsadrlLRL 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 266 VpmkDNLQTRSLKLNGIEKLKVRE------IKGLITTKILQAQEKEIAISIEVPDNIERIDMNTIELSRIIGITLDNAIE 339
Cdd:COG0642 161 I---NDLLDLSRLEAGKLELEPEPvdlaelLEEVVELFRPLAEEKGIELELDLPDDLPTVRGDPDRLRQVLLNLLSNAIK 237
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 656016155 340 ASEPldDSLIRIAFFKEEESVTLIIMNKC----DDDIPRvheLFEEGFSTKGKNR----GLGLSTLKEITD 402
Cdd:COG0642 238 YTPE--GGTVTVSVRREGDRVRISVEDTGpgipPEDLER---IFEPFFRTDPSRRgggtGLGLAIVKRIVE 303
|
|
| PRK11086 |
PRK11086 |
sensory histidine kinase DcuS; Provisional |
282-399 |
6.40e-07 |
|
sensory histidine kinase DcuS; Provisional
Pssm-ID: 236839 [Multi-domain] Cd Length: 542 Bit Score: 51.45 E-value: 6.40e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 282 IEKLKVREIKGLITTKILQAQEKEIAISI----EVPDNI-ERIdmnTIELSRIIGITLDNAIEASEPLDDSLIRIAFFKE 356
Cdd:PRK11086 388 LGKIKSPVIAGFLLGKISRARELGITLIIsedsQLPDSGdEDQ---VHELITILGNLIENALEAVGGEEGGEISVSLHYR 464
|
90 100 110 120
....*....|....*....|....*....|....*....|....*...
gi 656016155 357 EESVTLIImnkcDDDIP-----RVHELFEEGFSTKGKNRGLGLSTLKE 399
Cdd:PRK11086 465 NGWLHCEV----SDDGPgiapdEIDAIFDKGYSTKGSNRGVGLYLVKQ 508
|
|
| HATPase_c |
pfam02518 |
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the ... |
324-402 |
2.42e-06 |
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.
Pssm-ID: 460579 [Multi-domain] Cd Length: 109 Bit Score: 46.21 E-value: 2.42e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 324 IELSRIIGITLDNAIEASEPLDDSLIRIaffKEEESVTLIIMNKC----DDDIPRVHELFEEGFSTKGKNRGLGLSTLKE 399
Cdd:pfam02518 4 LRLRQVLSNLLDNALKHAAKAGEITVTL---SEGGELTLTVEDNGigipPEDLPRIFEPFSTADKRGGGGTGLGLSIVRK 80
|
...
gi 656016155 400 ITD 402
Cdd:pfam02518 81 LVE 83
|
|
| NtrY |
COG5000 |
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism ... |
287-400 |
9.09e-06 |
|
Signal transduction histidine kinase NtrY involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms];
Pssm-ID: 444024 [Multi-domain] Cd Length: 422 Bit Score: 47.65 E-value: 9.09e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 287 VREIKGLITTkilQAQEKEIAISIEVPDNIERIDMNTIELSRIIGITLDNAIEASEplDDSLIRIAFFKEEESVTLIIMn 366
Cdd:COG5000 282 LREVLALYEP---ALKEKDIRLELDLDPDLPEVLADRDQLEQVLINLLKNAIEAIE--EGGEIEVSTRREDGRVRIEVS- 355
|
90 100 110
....*....|....*....|....*....|....*....
gi 656016155 367 kcdDD---IPR--VHELFEEGFSTKGKNRGLGLSTLKEI 400
Cdd:COG5000 356 ---DNgpgIPEevLERIFEPFFTTKPKGTGLGLAIVKKI 391
|
|
| HATPase_DpiB-CitA-like |
cd16915 |
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to ... |
329-403 |
1.12e-05 |
|
Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 DpiB, DcuS, and Bacillus subtilis CitS, DctS, and YufL; This family includes histidine kinase-like ATPase domains of Escherichia coli K-12 DpiB and DcuS, and Bacillus subtilis CitS, DctS and MalK histidine kinases (HKs) all of which are two component transduction systems (TCSs). E. coli K-12 DpiB (also known as CitA) is the histidine kinase (HK) of DpiA-DpiB, a two-component signal transduction system (TCS) required for the expression of citrate-specific fermentation genes and genes involved in plasmid inheritance. E. coli K-12 DcuS (also known as YjdH) is the HK of DcuS-DcuR, a TCS that in the presence of the extracellular C4-dicarboxlates, activates the expression of the genes of anaerobic fumarate respiration and of aerobic C4-dicarboxylate uptake. CitS is the HK of Bacillus subtilis CitS-CitT, a TCS which regulates expression of CitM, the Mg-citrate transporter. Bacillus subtilis DctS forms a tripartite sensor unit (DctS/DctA/DctB) for sensing C4 dicarboxylates. Bacillus subtilis MalK (also known as YfuL) is the HK of MalK-MalR (YufL-YufM) a TCS which regulates the expression of the malate transporters MaeN (YufR) and YflS, and is essential for utilization of malate in minimal medium. Proteins having this DpiB-CitA-like HATPase domain generally have sensor domains such as Cache and PAS, and a histidine kinase A (HisKA)-like SpoOB-type, alpha-helical domain.
Pssm-ID: 340392 [Multi-domain] Cd Length: 104 Bit Score: 43.82 E-value: 1.12e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 329 IIGITLDNAIEASEPLDDSLIRIAFFKEEESVTLIImnKCDDDIPRVHE-----LFEEGFSTKG-KNRGLGLSTLKEITD 402
Cdd:cd16915 4 IVGNLIDNALDALAATGAPNKQVEVFLRDEGDDLVI--EVRDTGPGIAPelrdkVFERGVSTKGqGERGIGLALVRQSVE 81
|
.
gi 656016155 403 N 403
Cdd:cd16915 82 R 82
|
|
| COG4191 |
COG4191 |
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal ... |
300-400 |
1.46e-05 |
|
Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms];
Pssm-ID: 443345 [Multi-domain] Cd Length: 361 Bit Score: 46.72 E-value: 1.46e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 300 QAQEKEIAISIEVPDNIERIDMNTIELSRIIGITLDNAIEASEPLDDSLIRIAFFKEEESVTLIIM-NKC---DDDIPRv 375
Cdd:COG4191 231 RLKARGIEVELDLPPDLPPVLGDPGQLEQVLLNLLINAIDAMEEGEGGRITISTRREGDYVVISVRdNGPgipPEVLER- 309
|
90 100
....*....|....*....|....*..
gi 656016155 376 heLFEEGFSTK--GKNRGLGLSTLKEI 400
Cdd:COG4191 310 --IFEPFFTTKpvGKGTGLGLSISYGI 334
|
|
| HATPase_c |
smart00387 |
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. |
324-402 |
1.85e-04 |
|
Histidine kinase-like ATPases; Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Pssm-ID: 214643 [Multi-domain] Cd Length: 111 Bit Score: 40.71 E-value: 1.85e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 324 IELSRIIGITLDNAIEASEPldDSLIRIAFFKEEESVTLIIMnkcdDD---IPR--VHELFEEGFSTKGKNR-----GLG 393
Cdd:smart00387 4 DRLRQVLSNLLDNAIKYTPE--GGRITVTLERDGDHVEITVE----DNgpgIPPedLEKIFEPFFRTDKRSRkiggtGLG 77
|
....*....
gi 656016155 394 LSTLKEITD 402
Cdd:smart00387 78 LSIVKKLVE 86
|
|
| dpiB |
PRK15053 |
sensor histidine kinase DpiB; Provisional |
209-391 |
3.39e-04 |
|
sensor histidine kinase DpiB; Provisional
Pssm-ID: 185013 [Multi-domain] Cd Length: 545 Bit Score: 42.90 E-value: 3.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 209 RNLQEIETYYEYTLKIESINNEMRKFRHDYVNILST------MSEFIREDDMPGLRQYFNEQIVpmkDNLQTrslklngi 282
Cdd:PRK15053 320 RSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTlngllqMKEYDRVLEMVQGESQAQQQLI---DSLRE-------- 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 283 eKLKVREIKGLITTKILQAQEKEIAISIEVPDNIERI--DMNTIELSRIIGITLDNAIEAS--EPLDDSLIRIAFFKEEE 358
Cdd:PRK15053 389 -AFADRQVAGLLFGKVQRARELGLKMVIVPGSQLSQLppGLDSTEFAAIVGNLLDNAFEASlrSDEGNKIVELFLSDEGD 467
|
170 180 190
....*....|....*....|....*....|....
gi 656016155 359 SVTLIIMNK-CDDDIPRVHELFEEGFSTKGKNRG 391
Cdd:PRK15053 468 DVVIEVADQgCGVPESLRDKIFEQGVSTRADEPG 501
|
|
| PRK11100 |
PRK11100 |
sensory histidine kinase CreC; Provisional |
246-400 |
4.40e-04 |
|
sensory histidine kinase CreC; Provisional
Pssm-ID: 236846 [Multi-domain] Cd Length: 475 Bit Score: 42.52 E-value: 4.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 246 SEFIREDDMPGLRQYFNEQIVPMKDNLQT---RSLKL------NGIEKLKVREIKGLITT----KILQAQEKEIAISIEV 312
Cdd:PRK11100 278 AELLQEDPPPEDRARFTGNILTQSARLQQlidRLLELarleqrQELEVLEPVALAALLEElveaREAQAAAKGITLRLRP 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016155 313 PDNieRIDMNTIELSRIIGITLDNAIEASEPldDSLIRIAFFKEEESVTLIIMNKC----DDDIPRVHELFeegFS---- 384
Cdd:PRK11100 358 DDA--RVLGDPFLLRQALGNLLDNAIDFSPE--GGTITLSAEVDGEQVALSVEDQGpgipDYALPRIFERF---YSlprp 430
|
170
....*....|....*..
gi 656016155 385 -TKGKNRGLGLSTLKEI 400
Cdd:PRK11100 431 aNGRKSTGLGLAFVREV 447
|
|
| |
