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Conserved domains on  [gi|656016194|ref|WP_029056102|]
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MULTISPECIES: DUF2188 domain-containing protein [Staphylococcus]

Protein Classification

DUF2188 domain-containing protein( domain architecture ID 10008902)

DUF2188 domain-containing protein similar to Bacillus subtilis YdaT

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YdaT COG4876
Uncharacterized conserved protein YdaT [Function unknown];
1-123 2.49e-49

Uncharacterized conserved protein YdaT [Function unknown];


:

Pssm-ID: 443904  Cd Length: 122  Bit Score: 153.76  E-value: 2.49e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016194   1 MPWTMDDYPQSLKNLDELERKKAIDIANAMLKDGYKESDIIPIATKQAEKWYKDASKDDLNELKNKHITQHQTDQSAnPE 80
Cdd:COG4876    1 MPWTMNDYPASMKNLDPLVRKKAIEIANALLDEGYDEGRAIPIATEQAKEWYRNASKEEEKELKKEDNPQKRDDHDS-PE 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 656016194  81 LNEEPIHVYFEDNEWKVKTEKAKQASDTFQYKKDAVKRAQEIA 123
Cdd:COG4876   80 LLDEDVEVYYEDDGWKVKTEGAKRASEVFDTKKEAVKRAKEIA 122
 
Name Accession Description Interval E-value
YdaT COG4876
Uncharacterized conserved protein YdaT [Function unknown];
1-123 2.49e-49

Uncharacterized conserved protein YdaT [Function unknown];


Pssm-ID: 443904  Cd Length: 122  Bit Score: 153.76  E-value: 2.49e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016194   1 MPWTMDDYPQSLKNLDELERKKAIDIANAMLKDGYKESDIIPIATKQAEKWYKDASKDDLNELKNKHITQHQTDQSAnPE 80
Cdd:COG4876    1 MPWTMNDYPASMKNLDPLVRKKAIEIANALLDEGYDEGRAIPIATEQAKEWYRNASKEEEKELKKEDNPQKRDDHDS-PE 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 656016194  81 LNEEPIHVYFEDNEWKVKTEKAKQASDTFQYKKDAVKRAQEIA 123
Cdd:COG4876   80 LLDEDVEVYYEDDGWKVKTEGAKRASEVFDTKKEAVKRAKEIA 122
DUF2188 pfam09954
Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ...
 86-136 2.68e-05

Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ribosome-associating protein predicted to mediate translation inhibition alongside repair of DNA damage or restriction in conflict contexts. A subset of this family contains a conserved histidine residue, raising the possibility that it directly acts as a RNase or in RNA end-processing.


Pssm-ID: 378323  Cd Length: 62  Bit Score: 39.58  E-value: 2.68e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 656016194   86 IHVYF-EDNEWKVKTEKAKQASDTFQYKKDAVKRAQEIA-ENKNTKVIEHQKD 136
Cdd:pfam09954   1 YHVVPrDDGGWAVKREGASRASKTFDTQAEAIEAARELAkNQGGSELVIHGRD 53
 
Name Accession Description Interval E-value
YdaT COG4876
Uncharacterized conserved protein YdaT [Function unknown];
1-123 2.49e-49

Uncharacterized conserved protein YdaT [Function unknown];


Pssm-ID: 443904  Cd Length: 122  Bit Score: 153.76  E-value: 2.49e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656016194   1 MPWTMDDYPQSLKNLDELERKKAIDIANAMLKDGYKESDIIPIATKQAEKWYKDASKDDLNELKNKHITQHQTDQSAnPE 80
Cdd:COG4876    1 MPWTMNDYPASMKNLDPLVRKKAIEIANALLDEGYDEGRAIPIATEQAKEWYRNASKEEEKELKKEDNPQKRDDHDS-PE 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|...
gi 656016194  81 LNEEPIHVYFEDNEWKVKTEKAKQASDTFQYKKDAVKRAQEIA 123
Cdd:COG4876   80 LLDEDVEVYYEDDGWKVKTEGAKRASEVFDTKKEAVKRAKEIA 122
DUF2188 pfam09954
Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ...
 86-136 2.68e-05

Uncharacterized protein conserved in bacteria (DUF2188); This domain represents a ribosome-associating protein predicted to mediate translation inhibition alongside repair of DNA damage or restriction in conflict contexts. A subset of this family contains a conserved histidine residue, raising the possibility that it directly acts as a RNase or in RNA end-processing.


Pssm-ID: 378323  Cd Length: 62  Bit Score: 39.58  E-value: 2.68e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|...
gi 656016194   86 IHVYF-EDNEWKVKTEKAKQASDTFQYKKDAVKRAQEIA-ENKNTKVIEHQKD 136
Cdd:pfam09954   1 YHVVPrDDGGWAVKREGASRASKTFDTQAEAIEAARELAkNQGGSELVIHGRD 53
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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