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Conserved domains on  [gi|656276348|ref|WP_029222001|]
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MULTISPECIES: OmpA family protein [Vibrio]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 105-207 1.71e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 120.74  E-value: 1.71e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 105 VNFKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGE 184
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|...
gi 656276348 185 YVPACTNASPQGKACNRRVELML 207
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 105-207 1.71e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 120.74  E-value: 1.71e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 105 VNFKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGE 184
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|...
gi 656276348 185 YVPACTNASPQGKACNRRVELML 207
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 91-208 1.33e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 119.12  E-value: 1.33e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  91 VLPGNHVMVKLEQHVNFKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESN 170
Cdd:COG2885  175 LLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK 254

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 656276348 171 YVSSRAIYTRGFGEYVPACTNASPQGKACNRRVELMLI 208
Cdd:COG2885  255 GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVL 292
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 107-200 7.65e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 72.39  E-value: 7.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  107 FKTGSAFPEPAYNQWLDTLGSYL-SQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGEY 185
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLkFPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 656276348  186 VPACTNASPQGKACN 200
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
94-208 5.67e-15

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 70.67  E-value: 5.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  94 GNHVMVKLEQHVNFKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVS 173
Cdd:PRK10510 103 GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVD 182

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 656276348 174 SRAIYTRGFGEYVPACTNASPQGKACNRRVELMLI 208
Cdd:PRK10510 183 ASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 41-207 5.52e-13

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 65.60  E-value: 5.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348   41 VQTTSVASNRSYSVQNSTHQQKTittnygrgvstndPLEVFLRQNRIDFEVLPgnhvmvkLEQHVNFKTGSAFPEPAYNQ 120
Cdd:TIGR03789  97 MVALTQKQQALEQLEAEYQQAQV-------------HLETLQQDQQQLLEELA-------LGMNVQFRTGSSDIEPHFQP 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  121 WLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGEYVPACTNASPQGKACN 200
Cdd:TIGR03789 157 QLDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFGESAPLKDEQESESDFFD 236


                  ....*..
gi 656276348  201 RRVELML 207
Cdd:TIGR03789 237 RRVTLTL 243
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 105-207 1.71e-35

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 120.74  E-value: 1.71e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 105 VNFKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGE 184
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|...
gi 656276348 185 YVPACTNASPQGKACNRRVELML 207
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 91-208 1.33e-32

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 119.12  E-value: 1.33e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  91 VLPGNHVMVKLEQHVNFKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESN 170
Cdd:COG2885  175 LLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK 254

                         90       100       110
                 ....*....|....*....|....*....|....*...
gi 656276348 171 YVSSRAIYTRGFGEYVPACTNASPQGKACNRRVELMLI 208
Cdd:COG2885  255 GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVVL 292
MotB COG1360
Flagellar motor protein MotB [Cell motility];
78-207 1.80e-17

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 76.42  E-value: 1.80e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  78 LEVFLRQNRIDFEVLPGNhVMVKLEQHVNFKTGSAFPEPAYNQWLDTLGSYLSQRqDIDVVIEGHTDN----TGSDRVND 153
Cdd:COG1360   35 LEENLLSGQVEVRITEEG-LVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEV-PNRIRVEGHTDNvpisTARFPSNW 112

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 656276348 154 PLSELRAKEVKARLESNYVSSRAIYTRGFGEYVPACTNASPQGKACNRRVELML 207
Cdd:COG1360  113 ELSAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVI 166
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 107-200 7.65e-17

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 72.39  E-value: 7.65e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  107 FKTGSAFPEPAYNQWLDTLGSYL-SQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGEY 185
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLkFPELKNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 656276348  186 VPACTNASPQGKACN 200
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
PRK10510 PRK10510
OmpA family lipoprotein;
94-208 5.67e-15

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 70.67  E-value: 5.67e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  94 GNHVMVKLEQHVNFKTGSAFPEPAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVS 173
Cdd:PRK10510 103 GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVD 182

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 656276348 174 SRAIYTRGFGEYVPACTNASPQGKACNRRVELMLI 208
Cdd:PRK10510 183 ASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLS 217
pdsO TIGR03789
proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine ...
 41-207 5.52e-13

proteobacterial sortase system peptidoglycan-associated protein; A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking]


Pssm-ID: 274783 [Multi-domain]  Cd Length: 243  Bit Score: 65.60  E-value: 5.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348   41 VQTTSVASNRSYSVQNSTHQQKTittnygrgvstndPLEVFLRQNRIDFEVLPgnhvmvkLEQHVNFKTGSAFPEPAYNQ 120
Cdd:TIGR03789  97 MVALTQKQQALEQLEAEYQQAQV-------------HLETLQQDQQQLLEELA-------LGMNVQFRTGSSDIEPHFQP 156

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  121 WLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGEYVPACTNASPQGKACN 200
Cdd:TIGR03789 157 QLDEVATLMKQSPELKLDLSGYADRRGDSQYNQALSEQRVLEVRSYLIKQGVDEARLTTQAFGESAPLKDEQESESDFFD 236


                  ....*..
gi 656276348  201 RRVELML 207
Cdd:TIGR03789 237 RRVTLTL 243
PRK09967 PRK09967
OmpA family protein;
116-207 2.09e-10

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 56.91  E-value: 2.09e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 116 PAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEV-KARLESNYVSSRAIYTRGFGEYVPACTNASP 194
Cdd:PRK09967  65 PESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVaDAWAMGGQIPRSNLTTQGLGKKYPIASNKTA 144

                         90
                 ....*....|...
gi 656276348 195 QGKACNRRVELML 207
Cdd:PRK09967 145 QGRAENRRVAVVI 157
PRK10808 PRK10808
outer membrane protein A; Reviewed
 101-205 5.49e-10

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 57.78  E-value: 5.49e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 101 LEQHVNFKTGSAFPEPAYNQWLDTLGSYLSQR--QDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIY 178
Cdd:PRK10808 222 LKSDVLFNFNKATLKPEGQQALDQLYSQLSNLdpKDGSVVVLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKIS 301

                         90       100       110
                 ....*....|....*....|....*....|....*.
gi 656276348 179 TRGFGEYVP----ACTNASPQGK-----ACNRRVEL 205
Cdd:PRK10808 302 ARGMGKSNPvtgnTCDNVKPRAAlidclAPDRRVEI 337
PRK07033 PRK07033
DotU family type VI secretion system protein;
107-210 5.85e-10

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 57.75  E-value: 5.85e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 107 FKTGSAFPEPAYNQWLDTLGSYLSQRQDiDVVIEGHTDNT--GSDRV--NDPLSELRAKEVKARLESNYVSSRAIYTRGF 182
Cdd:PRK07033 318 FASASTSVRDRYQPVLARVADALNQVKG-NVLVTGYSDNVpiRTARFpsNWELSQARAQAVRALLAARLGQPERVTAEGR 396

                         90       100
                 ....*....|....*....|....*...
gi 656276348 183 GEYVPACTNASPQGKACNRRVELMLIVS 210
Cdd:PRK07033 397 GDSDPVAPNDSAENRARNRRVEITLLVA 424
PRK08126 PRK08126
hypothetical protein; Provisional
 137-206 1.04e-09

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 57.01  E-value: 1.04e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 656276348 137 VVIEGHTDN----TGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGEYVPACTNASPQGKACNRRVELM 206
Cdd:PRK08126 356 VTVTGHTDNqpirSAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEIT 429
motB PRK07734
flagellar motor protein MotB; Reviewed
 136-208 3.27e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 55.13  E-value: 3.27e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 656276348 136 DVVIEGHTDN---TGSD-RVNDPLSELRAKE-VKARLESNYVSSRAIYTRGFGEYVPACTNASPQGKACNRRVELMLI 208
Cdd:PRK07734 175 NITISGHTDNvpiANAQfASNWELSVMRAVNfMQVLLENKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLIL 252
motB PRK08944
flagellar motor protein MotB; Reviewed
 107-207 4.94e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 55.02  E-value: 4.94e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 107 FKTGSAFPEPAYNQWLDTLGSYLSQRQDIdVVIEGHTDNTGSD----RVNDPLSELRAKEVKARLESNY-VSSRAIYTRG 181
Cdd:PRK08944 183 FPSGSAFLQPKFKPVVRKIGELLKDVPGI-ITVSGHTDNVPISselyRSNWDLSSARAVAVAHELLKVKgFDPQRLKVVG 261

                         90       100
                 ....*....|....*....|....*.
gi 656276348 182 FGEYVPACTNASPQGKACNRRVELML 207
Cdd:PRK08944 262 MADTQPLVPNDTAENRARNRRVEIII 287
PRK09039 PRK09039
peptidoglycan -binding protein;
105-207 8.06e-09

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 54.20  E-value: 8.06e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 105 VNFKTGSAFPEPAYNQWLDTLGSYLSQRQ-----DIDVVI--EGHTDN-----TGSDRVNDPLSELRAKEVKARLESNYV 172
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEIAKLAAALIELAkeippEINWVLrvDGHTDNvplsgTGRFRDNWELSSARAISVVKFLIALGV 305

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 656276348 173 SSRAIYTRGFGEYVPACTNASPQGKACNRRVELML 207
Cdd:PRK09039 306 PADRLAAAGFGEFQPLDPGDTPEARARNRRIELKL 340
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 107-206 5.81e-08

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 51.55  E-value: 5.81e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 107 FKTGSAFPEPAYNQWLDTLGSYLSQRqDIDVVIEGHTDNT--GSDRV--NDPLSELRAKEVKARLESNYVSSRAIYTRGF 182
Cdd:PRK09038 137 FGSGDAMLSDQAFAILEKVAEVLKPA-PNPIHVEGFTDNVpiATAQFpsNWELSAARAASVVRLLADDGVAPSRLAAVGY 215

                         90       100
                 ....*....|....*....|....
gi 656276348 183 GEYVPACTNASPQGKACNRRVELM 206
Cdd:PRK09038 216 GEFQPVADNDTAEGRARNRRVVLV 239
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
116-206 3.04e-07

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 48.71  E-value: 3.04e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 116 PAYNQWLDTLGSYLSQRQDIDVVIEGHTDNTGSDRVNDPLSELRAKEVKARLESNYVSSRAIYTRGFGEYVPACTNASPQ 195
Cdd:PRK10802  82 SDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEA 161

                         90
                 ....*....|.
gi 656276348 196 GKACNRRVELM 206
Cdd:PRK10802 162 AYAKNRRAVLV 172
PRK09040 PRK09040
hypothetical protein; Provisional
 125-205 2.24e-06

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 46.55  E-value: 2.24e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 125 LGSYLSQRQDIdVVIEGHTDN----TGSDRVND--PLSELRAKEVKARLESNYVSSRAIYTRGFGEYVPACTNASPQGKA 198
Cdd:PRK09040 114 LAAYLRARDEI-LMVSGFTDDqpvrAGNRRFADnwELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRA 192


                 ....*..
gi 656276348 199 CNRRVEL 205
Cdd:PRK09040 193 KNRRVEI 199
motB PRK06667
flagellar motor protein MotB; Validated
 139-208 2.39e-06

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 46.71  E-value: 2.39e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 139 IEGHTDNTGSDrVNDP------LSELRAKEV-------KARLESNYVSSraiytrGFGEYVPACTNASPQGKACNRRVEL 205
Cdd:PRK06667 164 IEGHTDNVDVN-PEGPwksnweLSGARAVNMleyilnyGDQSESWFQVS------GFAGSRPLATEDTPEGRAYNRRIDI 236


                 ...
gi 656276348 206 MLI 208
Cdd:PRK06667 237 VIL 239
PRK06925 PRK06925
flagellar motor protein MotB;
97-211 3.03e-06

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 46.30  E-value: 3.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  97 VMVKLEQHVNFKTGSAFPEPAYNQWLDTLGSYLSQRQDiDVVIEGHTDNTGSDRVNDP----LSELRAKEVKARLESNY- 171
Cdd:PRK06925 112 VVLVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIPN-DIKVEGHTDSRPISTYRYPsnweLSAARASSVIRYFTSKEk 190

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|
gi 656276348 172 VSSRAIYTRGFGEYVPACTNASPQGKACNRRVElmLIVSK 211
Cdd:PRK06925 191 LDSSRFIAVGYADTKPVVPNTTEENMQENRRVE--IVISD 228
motB PRK08457
flagellar motor protein MotB; Reviewed
 42-211 3.72e-06

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 46.25  E-value: 3.72e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  42 QTTSVASNRSYSVQNSThQQKTITTNYGRGVStndplevfLRQnrIDfevlpgNHVMVKLEQHVNFKTGSAfpePAYNQ- 120
Cdd:PRK08457  78 AEEEMDELKSLKASQNT-QQETIERRKGEGGA--------LDQ--ID------NGIALKLPSKLLFENGSA---EIINAd 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 121 ---WLDTLGSYLSQR-QDIDVVIEGHTDNT---GSDRVND-PLSELRAKEVKARLESNYVSSRAIYTRGFGEYVPACTNA 192
Cdd:PRK08457 138 mmdYLKRIAKIITKLpKQVKINVRGYTDNSplnKSRYKDHyELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPND 217

                        170
                 ....*....|....*....
gi 656276348 193 SPQGKACNRRVELMLIVSK 211
Cdd:PRK08457 218 SLENRLKNNRVEIFFKVDA 236
PRK07034 PRK07034
hypothetical protein; Provisional
 134-206 3.79e-04

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 40.93  E-value: 3.79e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 134 DIDVVieGHTDN----TGSDRVNDPLSELRAKEVKARLES----NYVSSRAIYTRGFGEYVPACTNASPQGKACNRRVEL 205
Cdd:PRK07034 428 DIEVI--GHTDNkpfrSTSGNNNLKLSAARASVVADKLREstqiNETHQREISAIGRGESDPLADNATEEGRKRNRRVDI 505


                 .
gi 656276348 206 M 206
Cdd:PRK07034 506 L 506
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 107-203 5.45e-04

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 39.66  E-value: 5.45e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348 107 FKTGSAFPEPAYNQWLDTLGSYLsQRQDIDVVIEGHTDNTGSDRVNDP----LSELRAKEVKARLESNY-VSSRAIYTRG 181
Cdd:PRK06742 119 FDTGDANVKPEAKEIISQLVGFF-QSVPNPIVVEGHTDSRPIHNDKFPsnweLSSARAANMIHHLIEVYnVDDKRLAAVG 197

                         90       100
                 ....*....|....*....|..
gi 656276348 182 FGEYVPACTNASPQGKACNRRV 203
Cdd:PRK06742 198 YADTKPVVPNDSPQNWEKNRRV 219
motB PRK05996
MotB family protein;
97-207 1.92e-03

MotB family protein;


Pssm-ID: 235665 [Multi-domain]  Cd Length: 423  Bit Score: 38.53  E-value: 1.92e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 656276348  97 VMVKLEQHVN---FKTGSAFPEPAYNQWLDTLGSYLSQRQDIdVVIEGHTDN---TGSDRVNDPLSELRAKE-----VKA 165
Cdd:PRK05996 305 LLISLTDQVDygmFAIGSAVPRAELVLAMEKIGQLLAERPGA-VIIRGHTDArpfKSATYDNWRLSTARAQSayymlVRG 383

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
gi 656276348 166 RLESNYVSSRAiytrGFGE---YVPACTNAspqgkACNRRVELML 207
Cdd:PRK05996 384 GLDEKRIEQVE----GFADrrpKLPNDPNA-----AANRRIEILI 419
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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