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Conserved domains on  [gi|657627410|ref|WP_029438178|]
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MULTISPECIES: KTSC domain-containing protein [Bacillus]

Protein Classification

KTSC domain-containing protein( domain architecture ID 10613036)

KTSC (lysine tRNA synthetase C-terminal) domain-containing protein contains a reasonably conserved YXY motif and may bind RNA

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
KTSC pfam13619
KTSC domain; This short domain is named after Lysine tRNA synthetase C-terminal domain. It is ...
 9-64 1.54e-18

KTSC domain; This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.


:

Pssm-ID: 433353  Cd Length: 58  Bit Score: 71.02  E-value: 1.54e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 657627410   9 SKTIVAVGYNPFSMILRIQLKNG-MYDFFNVPENIYTGLLNAHSKTNYHNTYIKNSY 64
Cdd:pfam13619  2 SSNIASVGYDPETQTLEIEFKNGsVYQYFGVPEEVYEALLSAPSKGRYFNRHIKGRY 58
 
Name Accession Description Interval E-value
KTSC pfam13619
KTSC domain; This short domain is named after Lysine tRNA synthetase C-terminal domain. It is ...
 9-64 1.54e-18

KTSC domain; This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.


Pssm-ID: 433353  Cd Length: 58  Bit Score: 71.02  E-value: 1.54e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 657627410   9 SKTIVAVGYNPFSMILRIQLKNG-MYDFFNVPENIYTGLLNAHSKTNYHNTYIKNSY 64
Cdd:pfam13619  2 SSNIASVGYDPETQTLEIEFKNGsVYQYFGVPEEVYEALLSAPSKGRYFNRHIKGRY 58
 
Name Accession Description Interval E-value
KTSC pfam13619
KTSC domain; This short domain is named after Lysine tRNA synthetase C-terminal domain. It is ...
 9-64 1.54e-18

KTSC domain; This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.


Pssm-ID: 433353  Cd Length: 58  Bit Score: 71.02  E-value: 1.54e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 657627410   9 SKTIVAVGYNPFSMILRIQLKNG-MYDFFNVPENIYTGLLNAHSKTNYHNTYIKNSY 64
Cdd:pfam13619  2 SSNIASVGYDPETQTLEIEFKNGsVYQYFGVPEEVYEALLSAPSKGRYFNRHIKGRY 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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