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Conserved domains on  [gi|657920160|ref|WP_029621928|]
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amino acid ABC transporter permease [Ruegeria conchae]

Protein Classification

amino acid ABC transporter permease( domain architecture ID 11433582)

amino acid ABC transporter permease is the transmembrane (TM) subunit of a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter which binds and transports amino acids

Gene Ontology:  GO:0140359|GO:0042626|GO:0006865
PubMed:  25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 36-249 8.20e-78

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


:

Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 234.20  E-value: 8.20e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIvfqsmgMN 115
Cdd:COG0765    9 LDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL------LG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 116 IPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAF 195
Cdd:COG0765   83 IDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSL 162

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 657920160 196 ASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRMGA 249
Cdd:COG0765  163 VSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 36-249 8.20e-78

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 234.20  E-value: 8.20e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIvfqsmgMN 115
Cdd:COG0765    9 LDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL------LG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 116 IPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAF 195
Cdd:COG0765   83 IDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSL 162

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 657920160 196 ASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRMGA 249
Cdd:COG0765  163 VSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 36-247 3.51e-42

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 143.27  E-value: 3.51e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLValpGLSEKRGWRLVNRI---YVEFVRSIPLLPMLFWVFYGLPIVFQSm 112
Cdd:PRK09494   9 WPAIPLLLEGAKMTLWISVLGLAGGLVIGLLA---GFARAYGGWIANHIalvFIELIRGTPIVVQVMFIYFALPMAFND- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 113 gmnIPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKM 192
Cdd:PRK09494  85 ---LRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKD 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 657920160 193 SAFASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRM 247
Cdd:PRK09494 162 TSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRM 216
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 42-247 7.41e-33

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 118.80  E-value: 7.41e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160   42 LVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPivfqSMGMNIPidPF 121
Cdd:TIGR03003  13 LIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLP----DIGIRLP--AL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  122 WGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVIGM 201
Cdd:TIGR03003  87 VAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITV 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 657920160  202 QELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRM 247
Cdd:TIGR03003 167 LELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 49-237 2.87e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 82.33  E-value: 2.87e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  49 TIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIVFqsmGMNIPIDPFWGAIITL 128
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL---GWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 129 AISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVIGMQELTRRA 208
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 657920160 209 NELVVTEYRPLEIYTLLIFEYLVLVLIIS 237
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 60-247 3.67e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 68.48  E-value: 3.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160   60 SIVIGLLVALpglSEKRGWRLVNRIYVEFVRSIPLLPMLfwvfyglPIVFQSMGMNIPIDPFWGAIITLAISDSAFTAEI 139
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLA-------ILLVVIAILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  140 YRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVI----GMQELTRRANELVVTE 215
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|..
gi 657920160  216 YRpLEIYTLLIFEYLVLVLIISAGVRWLERRM 247
Cdd:pfam00528 151 EI-QGPVLAAALILLLLNLLVDILQRLLDPRV 181
 
Name Accession Description Interval E-value
HisM COG0765
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 36-249 8.20e-78

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 440528 [Multi-domain]  Cd Length: 218  Bit Score: 234.20  E-value: 8.20e-78
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIvfqsmgMN 115
Cdd:COG0765    9 LDYLPLLLEGLLVTLLLTVLAIVLGLVLGLLLALARLSPNPVLRWLATAYVEFFRGTPLLVQLFFIYFGLPL------LG 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 116 IPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAF 195
Cdd:COG0765   83 IDLSPFVAAVIALTLNSAAYLAEIVRAGIQSVPKGQWEAARALGLSRWQTMRRIILPQALRIILPPLGNEFISLLKDTSL 162

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....
gi 657920160 196 ASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRMGA 249
Cdd:COG0765  163 VSVIGVPELTRAAQQIASRTFRPFEVYLVAALIYLVLTLPLSLLARRLERRLAR 216
ArtM COG4160
ABC-type arginine/histidine transport system, permease component [Amino acid transport and ...
 36-252 3.49e-48

ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443325 [Multi-domain]  Cd Length: 229  Bit Score: 158.72  E-value: 3.49e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGL---PIVFQSM 112
Cdd:COG4160    7 FEYLPLLLSGLPLTLQLLALSLLLGFLLAVPLALARASGNRLLRWPARGYIYVFRGTPLLVQLFLIYYGLgqfEWVRESW 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 113 GMNIPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKM 192
Cdd:COG4160   87 LWPLLRDPWFCALLALTLNTAAYTAEIFRGAIRAVPKGEIEAARALGMSRWQTFRRIILPSALRRALPAYSNEVILMLKA 166

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 193 SAFASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRMGADER 252
Cdd:COG4160  167 TALASTITVMDLTGVARRIYSRTYDPFEPFLIAALIYLVITFLLTRLFRLLERRLLRHLR 226
glnP PRK09494
glutamine ABC transporter permease protein; Reviewed
 36-247 3.51e-42

glutamine ABC transporter permease protein; Reviewed


Pssm-ID: 181907 [Multi-domain]  Cd Length: 219  Bit Score: 143.27  E-value: 3.51e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLValpGLSEKRGWRLVNRI---YVEFVRSIPLLPMLFWVFYGLPIVFQSm 112
Cdd:PRK09494   9 WPAIPLLLEGAKMTLWISVLGLAGGLVIGLLA---GFARAYGGWIANHIalvFIELIRGTPIVVQVMFIYFALPMAFND- 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 113 gmnIPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKM 192
Cdd:PRK09494  85 ---LRIDPFTAAVVTIMINSGAYIAEITRGAVLSIHKGFREAGLALGLSRRETLRYVIGPLALRRMLPPLGNQWIISIKD 161

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 657920160 193 SAFASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRM 247
Cdd:PRK09494 162 TSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVIYLIITLVLSFILRRLERRM 216
PRK15100 PRK15100
cystine ABC transporter permease;
41-252 3.10e-41

cystine ABC transporter permease;


Pssm-ID: 185055 [Multi-domain]  Cd Length: 220  Bit Score: 140.65  E-value: 3.10e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  41 FLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPivfqsmGMNIPIDP 120
Cdd:PRK15100  14 FLLKGAGYTLQLSIGGMFFGLLLGFILALMRLSPIWPVRWLARFYVSIFRGTPLIAQLFMIYYGLP------QFGIELDP 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 121 FWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVIG 200
Cdd:PRK15100  88 IPAAMIGLSLNTAAYAAETLRAAISSIDKGQWEAAASIGMTRWQTLRRAILPQAARTALPPLSNSFISLVKDTSLAATIQ 167

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 657920160 201 MQELTRRAnELVVTeyRPLEIYTLLIFE---YLVLVLIISAGVRWLERRMGADER 252
Cdd:PRK15100 168 VPELFRQA-QLITS--RTLEVFTMYLAAsliYWIMATVLSALQNRFENQLNRQER 219
ectoine_ehuD TIGR03003
ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are ...
 42-247 7.41e-33

ectoine/hydroxyectoine ABC transporter, permease protein EhuD; Members of this family are presumed to act as permease subunits of ectoine ABC transporters. Operons containing this gene also contain the other genes of the ABC transporter and typically are found next to either ectoine utilization or ectoine biosynthesis operons.


Pssm-ID: 132048 [Multi-domain]  Cd Length: 212  Bit Score: 118.80  E-value: 7.41e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160   42 LVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPivfqSMGMNIPidPF 121
Cdd:TIGR03003  13 LIEGLKITILATALGFAIAAVLGLVFAILRRSAPTPISWPTSFVVEFIRGTPLLVQLYFLYYVLP----DIGIRLP--AL 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  122 WGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVIGM 201
Cdd:TIGR03003  87 VAGVLGLGLHYATYAAEVYRAGIEAVPRGQWEAATALNLTARQTYRHIILPQAIPPIIPALGNYLVAMFKETPVLSAITV 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 657920160  202 QELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRM 247
Cdd:TIGR03003 167 LELMNQAKSIGNSTFRYLEPMTLVGVFFLILSIISVFFLRRLEARL 212
BatB COG4597
ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; ...
 94-252 1.17e-27

ABC-type amino acid transport system, permease component [Amino acid transport and metabolism];


Pssm-ID: 443651 [Multi-domain]  Cd Length: 397  Bit Score: 109.08  E-value: 1.17e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  94 LLPMLFWVFYGLPIVFQ---------SMGMNIpIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQ 164
Cdd:COG4597  230 GLPLLAFLLLGAPLSLDypelkgfnfRGGLTL-SPEFVALLLALSLYTAAFIAEIVRAGIQAVSKGQTEAARALGLRPGQ 308

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 165 TMRYVILPQAIRRILPPLANQFIYIVKMSAFASVIGMQELTR-RANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWL 243
Cdd:COG4597  309 TLRLVVLPQALRVIIPPLTSQYLNLTKNSSLAVAIGYPDLVSvFAGTTLNQTGQAIEIIAITMAVYLTISLLISLLMNWY 388


                 ....*....
gi 657920160 244 ERRMGADER 252
Cdd:COG4597  389 NRRVALVER 397
PRK15107 PRK15107
glutamate/aspartate ABC transporter permease GltK;
38-246 3.75e-26

glutamate/aspartate ABC transporter permease GltK;


Pssm-ID: 185062 [Multi-domain]  Cd Length: 224  Bit Score: 101.83  E-value: 3.75e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  38 NVKFLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIVFQS-MGMNI 116
Cdd:PRK15107  12 SLPYLLDGLVITLKITVTAVVIGILWGTILAVMRLSSFKPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNvLGLSP 91

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 117 PID-PFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAF 195
Cdd:PRK15107  92 KTDiRLISAMVAFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLTQGIVLFQDTSL 171

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|.
gi 657920160 196 ASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERR 246
Cdd:PRK15107 172 VYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSYLKKR 222
PRK11123 PRK11123
arginine ABC transporter permease ArtQ;
42-253 5.28e-22

arginine ABC transporter permease ArtQ;


Pssm-ID: 182979 [Multi-domain]  Cd Length: 238  Bit Score: 90.89  E-value: 5.28e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  42 LVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYG----------------- 104
Cdd:PRK11123   7 LASAAGMTVGLAVCALIVGLALAMLFAVWESAKWRPVAWPGTALVTLLRGLPEILVVLFIYFGssqllltlsdgftlnlg 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 105 -LPIVFQSMGMNIPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLA 183
Cdd:PRK11123  87 fVQIPVQMDIENFEVSPFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRHALPGLG 166

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 184 NQFIYIVKMSAFASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERRMGADERG 253
Cdd:PRK11123 167 NQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIIAAAIYLVITLISQYILKRIELRATRFERR 236
PRK15135 PRK15135
histidine ABC transporter permease HisQ;
40-246 3.75e-21

histidine ABC transporter permease HisQ;


Pssm-ID: 185089 [Multi-domain]  Cd Length: 228  Bit Score: 88.31  E-value: 3.75e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  40 KFLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIVFQS----MGM- 114
Cdd:PRK15135   7 GVILQGALVTLELALSSVVLAVIIGLIGAGGKLSQNRLLGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNSvteaLGVg 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 115 NIPIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSA 194
Cdd:PRK15135  87 QIDIDPMVAGIITLGFIYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQVILKATA 166

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 657920160 195 FASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERR 246
Cdd:PRK15135 167 LVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLWLERR 218
HEQRo_perm_3TM TIGR01726
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This ...
 38-142 1.68e-19

amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; This model represents one of several classes of multiple membrane spanning regions found immediately N-terminal to the domain described by pfam00528, binding-protein-dependent transport systems inner membrane component. The region covered by this model generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline. [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 130787 [Multi-domain]  Cd Length: 99  Bit Score: 80.65  E-value: 1.68e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160   38 NVKFLVSGMGATIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIvfqsmgMNIP 117
Cdd:TIGR01726   1 NLPFLLKGLLLTLLLSVLSILLGLVLGLLLALLRLSGNRPLRWIATVYVELFRGTPLLVQLFFIYFGLPL------IGIR 74

                          90       100
                  ....*....|....*....|....*
gi 657920160  118 IDPFWGAIITLAISDSAFTAEIYRA 142
Cdd:TIGR01726  75 LSPLTAAVIALTLFYGAYLAEIFRG 99
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 49-237 2.87e-19

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 82.33  E-value: 2.87e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  49 TIQISLIAAIMSIVIGLLVALPGLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVFYGLPIVFqsmGMNIPIDPFWGAIITL 128
Cdd:cd06261    4 TLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLL---GWGILPGLGLPALILA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 129 AISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVIGMQELTRRA 208
Cdd:cd06261   81 LLLIAPFARLIRRAALESIPKDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGPG 160

                        170       180
                 ....*....|....*....|....*....
gi 657920160 209 NELVVTEYRPLEIYTLLIFEYLVLVLIIS 237
Cdd:cd06261  161 TGLLLIFAILFPGDLGVAAAVALILLLLS 189
artM PRK11122
arginine ABC transporter permease ArtM;
50-252 2.53e-18

arginine ABC transporter permease ArtM;


Pssm-ID: 182978 [Multi-domain]  Cd Length: 222  Bit Score: 80.77  E-value: 2.53e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  50 IQISLIAAIMSIVIGLLVALP---GLSEKRGW-RLVNRIYVEFVRSIPLLPMLFWVFYGlPIVFQSMgMNIPI------D 119
Cdd:PRK11122  12 LHTSLTLTVASLLVALVLALIftiILTLKTPVlVWLVRGYITLFTGTPLLVQIFLIYYG-PGQFPWL-QEYPWlwhllsQ 89

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 120 PFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRyVILPQAIRRILPPLANQFIYIVKMSAFASVI 199
Cdd:PRK11122  90 PWLCAMLALALNSAAYSTQLFYGAVRAIPEGQWQSCAALGMSKKQTLR-ILLPYAFKRALSSYSNEVVLVFKSTSLAYTI 168

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|...
gi 657920160 200 GMQELTRRANELVVTEYRPLeIYTLLIFEYLVLVLIISAGVRWLERRMGADER 252
Cdd:PRK11122 169 TLMDVMGYSQLLYGRTYDVM-VFGAAGIIYLVVNGLLTLLMRLIERKALAFER 220
PRK15069 PRK15069
histidine ABC transporter permease HisM;
52-246 5.80e-16

histidine ABC transporter permease HisM;


Pssm-ID: 185029 [Multi-domain]  Cd Length: 234  Bit Score: 74.70  E-value: 5.80e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  52 ISLIAAIMSIVIGLLVALP----GLSEKRGWRLVNRIYVEFVRSIPLLPMLFWVF---YGLPIV--------FQSMGMNI 116
Cdd:PRK15069  25 ITLWLLVASVVIGFVLAVPlaiaRVSSNKWIRFPVWLYTYVFRGTPLYVQLLVFYtgmYSLEIVrgtdlldaFFRSGLNC 104

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 117 pidpfwgAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFA 196
Cdd:PRK15069 105 -------TILAFTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGMSTFKLYRRIILPSALRRALPAYSNEVILMLHATTLA 177

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|
gi 657920160 197 SVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVRWLERR 246
Cdd:PRK15069 178 FTATVPDILKIARDINSATYQPFQAFGIAAVLYLIISFVLISLFRRAERR 227
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 60-247 3.67e-14

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 68.48  E-value: 3.67e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160   60 SIVIGLLVALpglSEKRGWRLVNRIYVEFVRSIPLLPMLfwvfyglPIVFQSMGMNIPIDPFWGAIITLAISDSAFTAEI 139
Cdd:pfam00528   1 GIPLGIIAAL---RRGRRLDRLLRPLIDLLQALPSFVLA-------ILLVVIAILSILGHGILPAIILALLGWAGYARLI 70

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  140 YRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAFASVI----GMQELTRRANELVVTE 215
Cdd:pfam00528  71 RRAALRSLPSDLVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswpGLGLLLIEAILGYDYP 150

                         170       180       190
                  ....*....|....*....|....*....|..
gi 657920160  216 YRpLEIYTLLIFEYLVLVLIISAGVRWLERRM 247
Cdd:pfam00528 151 EI-QGPVLAAALILLLLNLLVDILQRLLDPRV 181
PhnE COG3639
ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport ...
 36-188 1.94e-10

ABC-type phosphate/phosphonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 442856 [Multi-domain]  Cd Length: 244  Bit Score: 59.32  E-value: 1.94e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLVALPG---LSEKRGWRLVNRIYVEFVRSIPllpMLFWVFYGLPIVFQSm 112
Cdd:COG3639   43 WSYLPDLLSALLETLAIALLGTLLGAVLALPLAFLAarnLAPNPWVRLLARRLLNVLRAIP---ELVWALIFVAAVGLG- 118

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 657920160 113 gmnipidPFWGaIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQairrILPPLANQFIY 188
Cdd:COG3639  119 -------PFAG-VLALAIHTIGFLGKLFAEAIEEIDPGPVEALRATGASRLQVIRYGVLPQ----VLPQFLSYTLY 182
PhnE TIGR01097
phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound ...
 36-189 1.32e-09

phosphonate ABC transporter, permease protein PhnE; Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions]


Pssm-ID: 273441 [Multi-domain]  Cd Length: 250  Bit Score: 56.78  E-value: 1.32e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160   36 WTNVKFLVSGMGATIQISLIAAIMSIVIGLLVALPG---LSEKRGWRLVNRIYVEFVRSIP--LLPMLFWVFYGLpivfq 110
Cdd:TIGR01097  50 WSYLPRILKALLETLAMAILGTVLAAVLAVPLALLAarnITPSPWLYGLARLLLNFLRAIPelVWALIFVAAVGL----- 124

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 657920160  111 smgmnipiDPFWGaIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQairrILPPLANQFIYI 189
Cdd:TIGR01097 125 --------GPFAG-VLALAFHTVGFLGKLFAEAIEEVDPGPVEALRATGASKLQVIRYGVLPQ----VLPQFLSYTLYR 190
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 42-201 1.62e-05

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 45.10  E-value: 1.62e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  42 LVSGMGATIQISLIAAIMSIVIGLLV-ALPGLSekRGW--RLVNRIyVEFVRSIPLLPMLfwvfyglpIVFQS-MGMNIp 117
Cdd:COG1173   74 LLYGARISLLVGLLAVLIALVIGVLLgLLAGYF--GGWvdAVLMRL-VDVLLAFPSLLLA--------IALVAvLGPGL- 141

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 118 idpfWGAIITLAISDSAFTAEIYRAGIQSIaKGQS--EAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKMSAF 195
Cdd:COG1173  142 ----LNVILALGLTGWPGYARLVRAQVLSL-REREyvEAARALGASPLRIIFRHILPNVLPPLIVQATLGIASAILAEAG 216


                 ....*.
gi 657920160 196 ASVIGM 201
Cdd:COG1173  217 LSFLGL 222
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
36-179 2.87e-05

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 44.36  E-value: 2.87e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLVSgMGATIQISLIAAIMSIVIGLLVALpglsekrgwrLVNRI--YVEFVRSIPLLPML----------FWVF- 102
Cdd:COG1175   69 FTDPRFWNA-LGNTLLFTVVSVPLQLVLGLLLAL----------LLNRKlrGRGFFRTLFFLPWVispvvvaliwKWLFn 137

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 103 --YG-LPIVFQSMGMNIP---IDPFWgAIITLAISD----SAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILP 172
Cdd:COG1175  138 pdYGlLNALLGALGLEPInwlGDPSL-ALPAVIIVTvwkgTGFNMLIFLAGLQSIPRELYEAARIDGASPWQRFRRITLP 216


                 ....*..
gi 657920160 173 QaIRRIL 179
Cdd:COG1175  217 L-LRPTI 222
PRK10782 PRK10782
D-methionine ABC transporter permease MetI;
42-241 4.23e-05

D-methionine ABC transporter permease MetI;


Pssm-ID: 182726  Cd Length: 217  Bit Score: 43.57  E-value: 4.23e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  42 LVSGMGATIQISLIAAIMSIVIGLLVAL------PG--LSEKRGWRLVNRIyVEFVRSIPLLPMLFWVF-YGLPIVFQSM 112
Cdd:PRK10782   9 LVRGVWETLAMTFVSGFFGFVIGLPVGVllyvtrPGqiIANAKLYRTLSAL-VNIFRSIPFIILLVWMIpFTRVIVGTSI 87

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 113 GMNipidpfwGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRILPPLANQFIYIVKM 192
Cdd:PRK10782  88 GLQ-------AAIVPLTVGAAPFIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY 160

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*....
gi 657920160 193 SAFASVIGMQELTRRANELVVTEYRPLEIYTLLIFEYLVLVLIISAGVR 241
Cdd:PRK10782 161 SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDR 209
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 42-174 7.57e-05

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 42.79  E-value: 7.57e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  42 LVSGMGATIQISLIAAIMSIVIGLLVALpglsekrGWRLVNRIYVEFVRSIPLLPMLF-WVFYGLP--IVFQSMGMNipi 118
Cdd:COG1177   59 LLDALLNSLLIALLSTLLATVLGTPAAL-------ALARYRFRGRRLLLALLLLPLVVpGIVLGVAllLLFSALGLS--- 128

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 657920160 119 DPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQA 174
Cdd:COG1177  129 GGLWGLILAHVVFTLPFVVLVVLARLQGFDPSLEEAARDLGASPWQTFRRVTLPLI 184
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 49-248 8.35e-05

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 42.81  E-value: 8.35e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  49 TIQISLIAAIMSIVIGLLVALpGLSEKR--GWRLVNRIyVEfvrsIPL-LP------MLFWVF---YGLPIVFQSMGMNI 116
Cdd:COG0555   59 SLGTALIAALINLVFGLPLAW-VLVRYRfpGKRLVDAL-VD----LPFaLPtavagiALLLLFgpnGWLGQLLAPLGIKV 132

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 117 PIDPfWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAirriLPPLANQFI--YIVKMSA 194
Cdd:COG0555  133 AFTP-LGIVLAQTFVSLPFVVRTVQPVLEELDPELEEAAATLGASRWQTFRRVILPLL----LPALLTGFAlaFARALGE 207

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 657920160 195 FASVIgmqelTRRANELVVTEYRPLEIYTLLI-FEY----------LVLVLIISAGVRWLERRMG 248
Cdd:COG0555  208 FGAVI-----FIAGNLPMKTEILPLLIYLKLEeGDYagataialvlLLISFLLLLLINLLQRRSR 267
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 36-188 1.23e-04

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 42.39  E-value: 1.23e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  36 WTNVKFLvSGMGATIQISLIAAIMSIVIGLLVALpGLSEK--RGWRLVNRIYVeFVRSIP----LLPMLfwvfyglpIVF 109
Cdd:COG0395   67 FTDGPFG-RYLLNSLIVAVVSTVLSLLLSSLAAY-ALARFrfRGRKLLFLLIL-ATLMIPgqvlLIPLY--------LLF 135

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 657920160 110 QSMGMnipIDPFWGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAirriLPPLANQFIY 188
Cdd:COG0395  136 RQLGL---LNTYWGLILPYLAFGLPFGIFLLRQFFRSIPRELEEAARIDGASEFRIFWRIVLPLS----KPALATVAIF 207
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
32-248 7.82e-04

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 40.14  E-value: 7.82e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  32 TASGWTNVKFLVSGMGA---TIQISLIAAIMSIVIGLLVALpgLSEKRGWRLVNriyveFVRSIPLLPmlfwvfYGLPIV 108
Cdd:COG1178  323 TLDNYRFVLLDPSLLRAllnSLLLALLAALLAVLLALLLAY--LVRRRRGRLAR-----LLDRLAMLP------YAVPGI 389

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 109 FQSMGMNIPIDPFWGA---------IITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPqairRIL 179
Cdd:COG1178  390 VLGLGLLLLFNRPLPLllygtlailVLAYVVRFLPFALRSLEAALAQIDPSLEEAARSLGASPLRTLRRVTLP----LLR 465

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160 180 PPLANQFIYivkmsAFASVIGmqELT-----RRANelvvTEYRPLEIYTLLIFEY--------LVLVLIISAGVRWLERR 246
Cdd:COG1178  466 PGLLAAALL-----VFVTSMK--ELSatlllRPPG----FETLAVLIYQLASSGRygeaaalaLLLVLVSLLPVLLLERL 534


                 ..
gi 657920160 247 MG 248
Cdd:COG1178  535 LG 536
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 42-179 8.46e-04

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 39.75  E-value: 8.46e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 657920160  42 LVSGMGATIQISLIAAIMSIVIGLLVALpGLSEKRGWRLVNRIYVEFVRSIPLLPMLfwvfyglPIVFQSMGMNipidpF 121
Cdd:COG0600   59 LWEHLLASLLRVLLGFALAALLGVPLGL-LLGLSRLLRRLLDPLLVFLRPIPPLALA-------PLLILWFGIG-----E 125

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*...
gi 657920160 122 WGAIITLAISDSAFTAEIYRAGIQSIAKGQSEAAQTIGLNYFQTMRYVILPQAIRRIL 179
Cdd:COG0600  126 ASKIFVIFLGAFFPILLNTAAGVRSVDPELLELARSLGASRWQILRKVVLPAALPYIF 183
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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