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Conserved domains on  [gi|659677081|ref|WP_029885164|]
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MULTISPECIES: DUF2025 family protein [Pseudomonas]

Protein Classification

DUF2025 family protein( domain architecture ID 10560341)

DUF2025 family protein similar to Pseudomonas aeruginosa protein PA1123

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF2025 pfam09634
Protein of unknown function (DUF2025); This protein is produced from gene PA1123 in ...
 1-104 6.39e-67

Protein of unknown function (DUF2025); This protein is produced from gene PA1123 in Pseudomonas. It contains three alpha helices and six beta strands and is thought to be monomeric. It appears to be present in the biofilm layer and may be a lipoprotein.


:

Pssm-ID: 430728  Cd Length: 105  Bit Score: 196.60  E-value: 6.39e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659677081    1 MAITSQDICNAADQLKGFVGFHDKRGVHIVRFSEDAFGMDVADASITPCSEFVWRPEQGQRMALCRERLALLLDQHVDDR 80
Cdd:pfam09634   1 MSITSADICQAADQLQGFVGFNRKTGQHIVRFSEDSFGMDVADDSITPTSEFVWAVDDGQLMTLDRERLQLLLEQRIDDR 80

                          90       100
                  ....*....|....*....|....
gi 659677081   81 LNIAEPLRIYLRRGDLPEIIAERR 104
Cdd:pfam09634  81 LNISEPLRVYLRRSDLPEISAERR 104
 
Name Accession Description Interval E-value
DUF2025 pfam09634
Protein of unknown function (DUF2025); This protein is produced from gene PA1123 in ...
 1-104 6.39e-67

Protein of unknown function (DUF2025); This protein is produced from gene PA1123 in Pseudomonas. It contains three alpha helices and six beta strands and is thought to be monomeric. It appears to be present in the biofilm layer and may be a lipoprotein.


Pssm-ID: 430728  Cd Length: 105  Bit Score: 196.60  E-value: 6.39e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659677081    1 MAITSQDICNAADQLKGFVGFHDKRGVHIVRFSEDAFGMDVADASITPCSEFVWRPEQGQRMALCRERLALLLDQHVDDR 80
Cdd:pfam09634   1 MSITSADICQAADQLQGFVGFNRKTGQHIVRFSEDSFGMDVADDSITPTSEFVWAVDDGQLMTLDRERLQLLLEQRIDDR 80

                          90       100
                  ....*....|....*....|....
gi 659677081   81 LNIAEPLRIYLRRGDLPEIIAERR 104
Cdd:pfam09634  81 LNISEPLRVYLRRSDLPEISAERR 104
 
Name Accession Description Interval E-value
DUF2025 pfam09634
Protein of unknown function (DUF2025); This protein is produced from gene PA1123 in ...
 1-104 6.39e-67

Protein of unknown function (DUF2025); This protein is produced from gene PA1123 in Pseudomonas. It contains three alpha helices and six beta strands and is thought to be monomeric. It appears to be present in the biofilm layer and may be a lipoprotein.


Pssm-ID: 430728  Cd Length: 105  Bit Score: 196.60  E-value: 6.39e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 659677081    1 MAITSQDICNAADQLKGFVGFHDKRGVHIVRFSEDAFGMDVADASITPCSEFVWRPEQGQRMALCRERLALLLDQHVDDR 80
Cdd:pfam09634   1 MSITSADICQAADQLQGFVGFNRKTGQHIVRFSEDSFGMDVADDSITPTSEFVWAVDDGQLMTLDRERLQLLLEQRIDDR 80

                          90       100
                  ....*....|....*....|....
gi 659677081   81 LNIAEPLRIYLRRGDLPEIIAERR 104
Cdd:pfam09634  81 LNISEPLRVYLRRSDLPEISAERR 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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