|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
215-293 |
6.07e-18 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 76.86 E-value: 6.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 215 VAKELGISLRQLHVVFEGAE-LSFSRTLSSMRIEEAKRLLLAFPALPVTQIAYGCGFDSLATFYRVFAGTYGMTPGDARA 293
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELgLSPKEYLRRLRLERARRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
209-292 |
6.89e-18 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 76.82 E-value: 6.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 209 NLTPAAVAKELGISLRQLHVVFEGAE-LSFSRTLSSMRIEEAKRLLlAFPALPVTQIAYGCGFDSLATFYRVFAGTYGMT 287
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETgTTPKQYLRDRRLERARRLL-RDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVT 79
|
....*
gi 665866672 288 PGDAR 292
Cdd:smart00342 80 PSEYR 84
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
69-294 |
8.25e-16 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 75.59 E-value: 8.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 69 SGFLHAGRDQVHAVGGGDITINYSDLPYDAIPGNEADFHYKMLKIPVDYEVMLGQATDDLFATRYAENNSFALPFRALFN 148
Cdd:COG2207 40 LLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 149 ALNAAPGRLIDPARDVTHIARLAMTARGRLSPAMPEVRAALRTGLCYAAqdimirkksrqnLTPAAVAKELGISLRQLHV 228
Cdd:COG2207 120 LLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL------------LTLEELARELGLSPRTLSR 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 665866672 229 VF-EGAELSFSRTLSSMRIEEAKRLLLAfPALPVTQIAYGCGFDSLATFYRVFAGTYGMTPGDARAE 294
Cdd:COG2207 188 LFkEETGTSPKQYLRELRLERAKRLLAE-TDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKR 253
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
196-293 |
1.38e-12 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 66.72 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 196 AAQDIMiRKKSRQNLTPAAVAKELGISLRQLHVVFEgAEL--SFSRTLSSMRIEEAKRLLLAfPALPVTQIAYGCGFDSL 273
Cdd:COG4977 214 RAQAWM-EANLEEPLSVDELARRAGMSPRTLERRFR-AATgtTPARYLQRLRLERARRLLET-TDLSIEEIAAACGFGSA 290
|
90 100
....*....|....*....|
gi 665866672 274 ATFYRVFAGTYGMTPGDARA 293
Cdd:COG4977 291 SHFRRAFRRRFGVSPSAYRR 310
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
209-293 |
8.08e-10 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 58.50 E-value: 8.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 209 NLTPAAVAKELGISLRQLHVVFEGAELSFSRTLSSMRIEEAKRLLLAFPA-LPVTQIAYGCGFDSLATFYRVFAGTYGMT 287
Cdd:PRK09685 214 ILRPEWIAGELGISVRSLYRLFAEQGLVVAQYIRNRRLDRCADDLRPAADdEKITSIAYKWGFSDSSHFSTAFKQRFGVS 293
|
....*.
gi 665866672 288 PGDARA 293
Cdd:PRK09685 294 PGEYRR 299
|
|
| AraC_binding |
pfam02311 |
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ... |
60-171 |
4.41e-08 |
|
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.
Pssm-ID: 396749 [Multi-domain] Cd Length: 134 Bit Score: 50.90 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 60 LCIGLQVKGSGFLHAGrDQVHAVGGGDITINYSDLPYDAIPGNEADFHYKMLKIPVDyevMLGQATDDLFATRYA----- 134
Cdd:pfam02311 24 YVIGYIERGVGRFRLN-GRTYHLGPGDLFLLPPGEPHDYEPESEDGWRYRWLYFEPE---LLERILADISILAGGplpll 99
|
90 100 110
....*....|....*....|....*....|....*..
gi 665866672 135 ENNSFALPFRALFNALNAApgRLIDPARDVTHIARLA 171
Cdd:pfam02311 100 RDPELAALLRALFRLLEEA--GRSDDLLAEALLYQLL 134
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| HTH_18 |
pfam12833 |
Helix-turn-helix domain; |
215-293 |
6.07e-18 |
|
Helix-turn-helix domain;
Pssm-ID: 432818 [Multi-domain] Cd Length: 81 Bit Score: 76.86 E-value: 6.07e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 215 VAKELGISLRQLHVVFEGAE-LSFSRTLSSMRIEEAKRLLLAFPALPVTQIAYGCGFDSLATFYRVFAGTYGMTPGDARA 293
Cdd:pfam12833 1 LAAALGMSPRTLSRLFKRELgLSPKEYLRRLRLERARRLLLEDTGLSVAEIALALGFSDASHFSRAFRRLFGLTPSEYRR 80
|
|
| HTH_ARAC |
smart00342 |
helix_turn_helix, arabinose operon control protein; |
209-292 |
6.89e-18 |
|
helix_turn_helix, arabinose operon control protein;
Pssm-ID: 197666 [Multi-domain] Cd Length: 84 Bit Score: 76.82 E-value: 6.89e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 209 NLTPAAVAKELGISLRQLHVVFEGAE-LSFSRTLSSMRIEEAKRLLlAFPALPVTQIAYGCGFDSLATFYRVFAGTYGMT 287
Cdd:smart00342 1 PLTLEDLAEALGVSPRHLQRLFKKETgTTPKQYLRDRRLERARRLL-RDTDLSVTEIALRVGFSSQSYFSRAFKKLFGVT 79
|
....*
gi 665866672 288 PGDAR 292
Cdd:smart00342 80 PSEYR 84
|
|
| AraC |
COG2207 |
AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; |
69-294 |
8.25e-16 |
|
AraC-type DNA-binding domain and AraC-containing proteins [Transcription];
Pssm-ID: 441809 [Multi-domain] Cd Length: 258 Bit Score: 75.59 E-value: 8.25e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 69 SGFLHAGRDQVHAVGGGDITINYSDLPYDAIPGNEADFHYKMLKIPVDYEVMLGQATDDLFATRYAENNSFALPFRALFN 148
Cdd:COG2207 40 LLALLLLLLLLLGLLGGLLLLLLLLLLLGLLLLLLLLLLGLLLLALLALLLLVGLLLLLLLLLLLLLLLLLLLLLLLLLL 119
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 149 ALNAAPGRLIDPARDVTHIARLAMTARGRLSPAMPEVRAALRTGLCYAAqdimirkksrqnLTPAAVAKELGISLRQLHV 228
Cdd:COG2207 120 LLLLLLLLLALLRALELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL------------LTLEELARELGLSPRTLSR 187
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 665866672 229 VF-EGAELSFSRTLSSMRIEEAKRLLLAfPALPVTQIAYGCGFDSLATFYRVFAGTYGMTPGDARAE 294
Cdd:COG2207 188 LFkEETGTSPKQYLRELRLERAKRLLAE-TDLSISEIAYELGFSSQSHFSRAFKKRFGVTPSEYRKR 253
|
|
| GlxA |
COG4977 |
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH ... |
196-293 |
1.38e-12 |
|
Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription];
Pssm-ID: 444002 [Multi-domain] Cd Length: 318 Bit Score: 66.72 E-value: 1.38e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 196 AAQDIMiRKKSRQNLTPAAVAKELGISLRQLHVVFEgAEL--SFSRTLSSMRIEEAKRLLLAfPALPVTQIAYGCGFDSL 273
Cdd:COG4977 214 RAQAWM-EANLEEPLSVDELARRAGMSPRTLERRFR-AATgtTPARYLQRLRLERARRLLET-TDLSIEEIAAACGFGSA 290
|
90 100
....*....|....*....|
gi 665866672 274 ATFYRVFAGTYGMTPGDARA 293
Cdd:COG4977 291 SHFRRAFRRRFGVSPSAYRR 310
|
|
| AdaA |
COG2169 |
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), ... |
201-293 |
3.98e-11 |
|
Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains [Replication, recombination and repair];
Pssm-ID: 441772 [Multi-domain] Cd Length: 358 Bit Score: 62.76 E-value: 3.98e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 201 MIRKKSRQNLTPAAVAKELGISLRQLHVVFEgAEL--SFSRTLSSMRIEEAKRLLLAfpALPVTQIAYGCGFDSLATFYR 278
Cdd:COG2169 92 LIEAGAEDRPSLEDLAARLGLSPRHLRRLFK-AHTgvTPKAYARARRLLRARQLLQT--GLSVTDAAYAAGFGSLSRFYE 168
|
90
....*....|....*
gi 665866672 279 VFAGTYGMTPGDARA 293
Cdd:COG2169 169 AFKKLLGMTPSAYRR 183
|
|
| PRK09685 |
PRK09685 |
DNA-binding transcriptional activator FeaR; Provisional |
209-293 |
8.08e-10 |
|
DNA-binding transcriptional activator FeaR; Provisional
Pssm-ID: 236612 [Multi-domain] Cd Length: 302 Bit Score: 58.50 E-value: 8.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 209 NLTPAAVAKELGISLRQLHVVFEGAELSFSRTLSSMRIEEAKRLLLAFPA-LPVTQIAYGCGFDSLATFYRVFAGTYGMT 287
Cdd:PRK09685 214 ILRPEWIAGELGISVRSLYRLFAEQGLVVAQYIRNRRLDRCADDLRPAADdEKITSIAYKWGFSDSSHFSTAFKQRFGVS 293
|
....*.
gi 665866672 288 PGDARA 293
Cdd:PRK09685 294 PGEYRR 299
|
|
| AraC_binding |
pfam02311 |
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization ... |
60-171 |
4.41e-08 |
|
AraC-like ligand binding domain; This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.
Pssm-ID: 396749 [Multi-domain] Cd Length: 134 Bit Score: 50.90 E-value: 4.41e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 60 LCIGLQVKGSGFLHAGrDQVHAVGGGDITINYSDLPYDAIPGNEADFHYKMLKIPVDyevMLGQATDDLFATRYA----- 134
Cdd:pfam02311 24 YVIGYIERGVGRFRLN-GRTYHLGPGDLFLLPPGEPHDYEPESEDGWRYRWLYFEPE---LLERILADISILAGGplpll 99
|
90 100 110
....*....|....*....|....*....|....*..
gi 665866672 135 ENNSFALPFRALFNALNAApgRLIDPARDVTHIARLA 171
Cdd:pfam02311 100 RDPELAALLRALFRLLEEA--GRSDDLLAEALLYQLL 134
|
|
| ftrA |
PRK09393 |
transcriptional activator FtrA; Provisional |
175-293 |
1.81e-05 |
|
transcriptional activator FtrA; Provisional
Pssm-ID: 181818 [Multi-domain] Cd Length: 322 Bit Score: 45.34 E-value: 1.81e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 175 RGRLSPAMPEVRAALRtglcyaaqdimirkksrQNLTPAAVAKELGISLRQLHVVFEGAE-LSFSRTLSSMRIEEAKRLL 253
Cdd:PRK09393 217 SDRLGPLIDWMRAHLA-----------------EPHTVASLAARAAMSPRTFLRRFEAATgMTPAEWLLRERLARARDLL 279
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 665866672 254 LAfPALPVTQIAYGCGFDSLATFYRVFAGTYGMTPGDARA 293
Cdd:PRK09393 280 ES-SALSIDQIAERAGFGSEESLRHHFRRRAATSPAAYRK 318
|
|
| PRK09978 |
PRK09978 |
DNA-binding transcriptional regulator GadX; Provisional |
211-297 |
2.69e-05 |
|
DNA-binding transcriptional regulator GadX; Provisional
Pssm-ID: 137624 [Multi-domain] Cd Length: 274 Bit Score: 44.92 E-value: 2.69e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 211 TPAAVAKELGISLRQLHVVFEGAELSFSRTLSSMRIEEAKRLLLAFpALPVTQIAYGCGFDSLATFYRVFAGTYGMTPG- 289
Cdd:PRK09978 160 TLARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIH-GFSIKRVAVSCGYHSVSYFIYVFRNYYGMTPTe 238
|
90
....*....|
gi 665866672 290 --DARAEDMP 297
Cdd:PRK09978 239 yqERSAQGLP 248
|
|
| PRK10219 |
PRK10219 |
superoxide response transcriptional regulator SoxS; |
208-292 |
9.55e-04 |
|
superoxide response transcriptional regulator SoxS;
Pssm-ID: 182314 [Multi-domain] Cd Length: 107 Bit Score: 37.98 E-value: 9.55e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 208 QNLTPAAVAKELGISLRQLHVVFEGAelsFSRTLSSMrIEEaKRLLLAFPAL-----PVTQIAYGCGFDSLATFYRVFAG 282
Cdd:PRK10219 20 QPLNIDVVAKKSGYSKWYLQRMFRTV---THQTLGDY-IRQ-RRLLLAAVELrtterPIFDIAMDLGYVSQQTFSRVFRR 94
|
90
....*....|
gi 665866672 283 TYGMTPGDAR 292
Cdd:PRK10219 95 QFDRTPSDYR 104
|
|
| PRK15044 |
PRK15044 |
transcriptional regulator SirC; Provisional |
199-288 |
1.97e-03 |
|
transcriptional regulator SirC; Provisional
Pssm-ID: 185004 [Multi-domain] Cd Length: 295 Bit Score: 39.25 E-value: 1.97e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 199 DIMIRKKSRQnLTPAAVAKELGISLRQLHVVFEGAELSFSRTLSSMRIEEAKRLLlAFPALPVTQIAYGCGFDSLATFYR 278
Cdd:PRK15044 199 NIIISDLTRK-WSQAEVAGKLFMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLL-RMGAGNISQVATMCGYDTPSYFIA 276
|
90
....*....|
gi 665866672 279 VFAGTYGMTP 288
Cdd:PRK15044 277 IFKRHFKITP 286
|
|
| PRK15186 |
PRK15186 |
AraC family transcriptional regulator; Provisional |
199-290 |
5.98e-03 |
|
AraC family transcriptional regulator; Provisional
Pssm-ID: 185108 [Multi-domain] Cd Length: 291 Bit Score: 37.74 E-value: 5.98e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 665866672 199 DIMIRKKSRQnLTPAAVAKELGISLRQLHVVFEGAELSFSRTLSSMRIEEAKRLLLAfPALPVTQIAYGCGFDSLATFYR 278
Cdd:PRK15186 188 NIIISDISRK-WALKDISDSLYMSCSTLKRKLKQENTSFSEVYLNARMNKATKLLRN-SEYNITRVAYMCGYDSASYFTC 265
|
90
....*....|..
gi 665866672 279 VFAGTYGMTPGD 290
Cdd:PRK15186 266 VFKKHFKTTPSE 277
|
|
|