|
Name |
Accession |
Description |
Interval |
E-value |
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
170-857 |
1.57e-23 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 106.39 E-value: 1.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 170 ESLLIERIEAEYARYFTPTGRPTGEWSAAVSRLAAAEAAVadcaaavaevDDGVRRHTELTEQVAELSQQLLAHQLRLEA 249
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEA----------EEKEEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 250 ARVAAEKIAAITDDAREAKLIATAAAAtsgastaahagrlglLTEIDTRTAAVVAAEAKARQAADEQATARAEAEACDAA 329
Cdd:COG4717 114 LREELEKLEKLLQLLPLYQELEALEAE---------------LAELPERLEELEERLEELRELEEELEELEAELAELQEE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 330 LTEATQVLT-AVRLRAESARRTLDQLAdcEEADRLAARLARIDDIEGDRDRVCAELSAVTLTEELLSRIERAAAAvdrgg 408
Cdd:COG4717 179 LEELLEQLSlATEEELQDLAEELEELQ--QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLL----- 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 409 aqLASISAAVEFTAAVDIELGvgdqrvslsagqswsvtatgpTEVKVPGVLTARIVPGATALDFQAK-YAAAQQELADAL 487
Cdd:COG4717 252 --LLIAAALLALLGLGGSLLS---------------------LILTIAGVLFLVLGLLALLFLLLAReKASLGKEAEELQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 488 AAGEVADLAAARSADLCRRELLSRRDQLTATLAGLCGDEQVDQLRSRLEQLcagppaeldlvstdtaTARAELDAVEAAR 567
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL----------------EEELQLEELEQEI 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 568 IA--AEKDCETRRQIAAgAARRLAEtstratvlQNAAAAESAELGAAMTRLACERASVGDDELAAKAEADLRVLQTAEQR 645
Cdd:COG4717 373 AAllAEAGVEDEEELRA-ALEQAEE--------YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 646 vidladelaatapdavaaelaeaadavelLRERHDEAIRALHEVGVELSVFGTQGRkgkLDAAETEREHAASHHARVGRR 725
Cdd:COG4717 444 -----------------------------LEEELEELREELAELEAELEQLEEDGE---LAELLQELEELKAELRELAEE 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 726 ARAARLLRSVMARHRDTTRLRYVEPYRAELHRLGRPVF-GPSFEVEVDTDLRIRSRTLDDRTVPYECLSGGAKEQLGILA 804
Cdd:COG4717 492 WAALKLALELLEEAREEYREERLPPVLERASEYFSRLTdGRYRLIRIDEDLSLKVDTEDGRTRPVEELSRGTREQLYLAL 571
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 671611461 805 RLAGAALVAKEdAVPVLIDDALGFTDPERLAKMGEVFDTIGADGQVIVLTCSP 857
Cdd:COG4717 572 RLALAELLAGE-PLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHE 623
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-172 |
5.60e-11 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 62.72 E-value: 5.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 2 KLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLLLEYKDRSTKKEVKQVKPTNADVGS-EVIAEISSG 80
Cdd:COG0419 1 KLLRLRLENFRSYRDTETIDFDDGLNLIVGPNGAGKSTILEAIRYALYGKARSRSKLRSDLINVGSEEASvELEFEHGGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 81 PYRFVYR-KRFHKRCETELTVLAPRREQLTGDEAHERVRTMLAEtVDTELWHAQRVLQAASTAAVDLsgcdaLSRALDLa 159
Cdd:COG0419 81 RYRIERRqGEFAEFLEAKPSERKEALKRLLGLEIYEELKERLKE-LEEALESALEELAELQKLKQEI-----LAQLSGL- 153
|
170
....*....|...
gi 671611461 160 aGDDAALSGTESL 172
Cdd:COG0419 154 -DPIETLSGGERL 165
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
1-53 |
2.20e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 47.59 E-value: 2.20e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 671611461 1 MKLHRLALTNYRGIAHRDVEFpDHGVVVVCGANEIGKSSMVEALDLLLEYKDR 53
Cdd:pfam13175 1 MKIKSIIIKNFRCLKDTEIDL-DEDLTVLIGKNNSGKSSILEALDIFLNNKEK 52
|
|
| recF |
PRK00064 |
recombination protein F; Reviewed |
1-47 |
2.72e-05 |
|
recombination protein F; Reviewed
Pssm-ID: 234608 [Multi-domain] Cd Length: 361 Bit Score: 47.46 E-value: 2.72e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 671611461 1 MKLHRLALTNYRGIAHRDVEFpDHGVVVVCGANEIGKSSMVEALDLL 47
Cdd:PRK00064 1 MYLTRLSLTDFRNYEELDLEL-SPGVNVLVGENGQGKTNLLEAIYLL 46
|
|
| ABC_RecF |
cd03242 |
ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that ... |
3-81 |
5.55e-03 |
|
ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213209 [Multi-domain] Cd Length: 270 Bit Score: 39.59 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 3 LHRLALTNYRGIAHRDVEFPDhGVVVVCGANEIGKSSMVEALDLLLEYK--DRSTKKEVKQVKPTNADV-------GSEV 73
Cdd:cd03242 1 LKSLELRNFRNYAELELEFEP-GVTVLVGENAQGKTNLLEAISLLATGKshRTSRDKELIRWGAEEAKIsavlerqGGEL 79
|
....*...
gi 671611461 74 IAEISSGP 81
Cdd:cd03242 80 ALELTIRS 87
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| YhaN |
COG4717 |
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
170-857 |
1.57e-23 |
|
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown];
Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 106.39 E-value: 1.57e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 170 ESLLIERIEAEYARYFTPTGRPTGEWSAAVSRLAAAEAAVadcaaavaevDDGVRRHTELTEQVAELSQQLLAHQLRLEA 249
Cdd:COG4717 44 RAMLLERLEKEADELFKPQGRKPELNLKELKELEEELKEA----------EEKEEEYAELQEELEELEEELEELEAELEE 113
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 250 ARVAAEKIAAITDDAREAKLIATAAAAtsgastaahagrlglLTEIDTRTAAVVAAEAKARQAADEQATARAEAEACDAA 329
Cdd:COG4717 114 LREELEKLEKLLQLLPLYQELEALEAE---------------LAELPERLEELEERLEELRELEEELEELEAELAELQEE 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 330 LTEATQVLT-AVRLRAESARRTLDQLAdcEEADRLAARLARIDDIEGDRDRVCAELSAVTLTEELLSRIERAAAAvdrgg 408
Cdd:COG4717 179 LEELLEQLSlATEEELQDLAEELEELQ--QRLAELEEELEEAQEELEELEEELEQLENELEAAALEERLKEARLL----- 251
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 409 aqLASISAAVEFTAAVDIELGvgdqrvslsagqswsvtatgpTEVKVPGVLTARIVPGATALDFQAK-YAAAQQELADAL 487
Cdd:COG4717 252 --LLIAAALLALLGLGGSLLS---------------------LILTIAGVLFLVLGLLALLFLLLAReKASLGKEAEELQ 308
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 488 AAGEVADLAAARSADLCRRELLSRRDQLTATLAGLCGDEQVDQLRSRLEQLcagppaeldlvstdtaTARAELDAVEAAR 567
Cdd:COG4717 309 ALPALEELEEEELEELLAALGLPPDLSPEELLELLDRIEELQELLREAEEL----------------EEELQLEELEQEI 372
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 568 IA--AEKDCETRRQIAAgAARRLAEtstratvlQNAAAAESAELGAAMTRLACERASVGDDELAAKAEADLRVLQTAEQR 645
Cdd:COG4717 373 AAllAEAGVEDEEELRA-ALEQAEE--------YQELKEELEELEEQLEELLGELEELLEALDEEELEEELEELEEELEE 443
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 646 vidladelaatapdavaaelaeaadavelLRERHDEAIRALHEVGVELSVFGTQGRkgkLDAAETEREHAASHHARVGRR 725
Cdd:COG4717 444 -----------------------------LEEELEELREELAELEAELEQLEEDGE---LAELLQELEELKAELRELAEE 491
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 726 ARAARLLRSVMARHRDTTRLRYVEPYRAELHRLGRPVF-GPSFEVEVDTDLRIRSRTLDDRTVPYECLSGGAKEQLGILA 804
Cdd:COG4717 492 WAALKLALELLEEAREEYREERLPPVLERASEYFSRLTdGRYRLIRIDEDLSLKVDTEDGRTRPVEELSRGTREQLYLAL 571
|
650 660 670 680 690
....*....|....*....|....*....|....*....|....*....|...
gi 671611461 805 RLAGAALVAKEdAVPVLIDDALGFTDPERLAKMGEVFDTIGADGQVIVLTCSP 857
Cdd:COG4717 572 RLALAELLAGE-PLPLILDDAFVNFDDERLRAALELLAELAKGRQVIYFTCHE 623
|
|
| SbcC |
COG0419 |
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
2-172 |
5.60e-11 |
|
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair];
Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 62.72 E-value: 5.60e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 2 KLHRLALTNYRGIAHRDVEFPDHGVVVVCGANEIGKSSMVEALDLLLEYKDRSTKKEVKQVKPTNADVGS-EVIAEISSG 80
Cdd:COG0419 1 KLLRLRLENFRSYRDTETIDFDDGLNLIVGPNGAGKSTILEAIRYALYGKARSRSKLRSDLINVGSEEASvELEFEHGGK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 81 PYRFVYR-KRFHKRCETELTVLAPRREQLTGDEAHERVRTMLAEtVDTELWHAQRVLQAASTAAVDLsgcdaLSRALDLa 159
Cdd:COG0419 81 RYRIERRqGEFAEFLEAKPSERKEALKRLLGLEIYEELKERLKE-LEEALESALEELAELQKLKQEI-----LAQLSGL- 153
|
170
....*....|...
gi 671611461 160 aGDDAALSGTESL 172
Cdd:COG0419 154 -DPIETLSGGERL 165
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
228-693 |
1.60e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 61.88 E-value: 1.60e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 228 ELTEQVAELSQQLLAHQLRLEAARVAAEKIAA-ITDDAREAKLIATAAAATSGASTAAHAGRLGLLTEIDTRTAAVVAAE 306
Cdd:COG1196 292 ELLAELARLEQDIARLEERRRELEERLEELEEeLAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEEALLEAE 371
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 307 AKARQAADEQATARAEAEACDAALTEATQVLTAVRLRAESARRTLDQLadceEADRLAARLARIDDIEGDRDRVCAELSA 386
Cdd:COG1196 372 AELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERL----EEELEELEEALAELEEEEEEEEEALEEA 447
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 387 VTLTEELLSRIERAAAAVDRGGAQLASISAAVEfTAAVDIELGVGDQRVSLSAGQSWSVTATGPTEVKVPGVLTARIVPG 466
Cdd:COG1196 448 AEEEAELEEEEEALLELLAELLEEAALLEAALA-ELLEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAV 526
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 467 ATALDFQAKYAAAqqeLADALAAGEVADLAAARSADLCRRELLSRRDQLTATLAGLCGDEQVDQLRSRLEQLCAGPPAEL 546
Cdd:COG1196 527 AVLIGVEAAYEAA---LEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDL 603
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 547 ---DLVSTDTATARAELDAVEAARIAAekDCETRRQIAAGAARRLAETSTRATVLQNAAAAESAELGAAMTRLACERASv 623
Cdd:COG1196 604 vasDLREADARYYVLGDTLLGRTLVAA--RLEAALRRAVTLAGRLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAE- 680
|
410 420 430 440 450 460 470
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 624 gDDELAAKAEADLRVLQTAEQRVIDLADELAATAPDAVAAELAEAADAVELLRERHDEAIRALHEVGVEL 693
Cdd:COG1196 681 -LEELAERLAEEELELEEALLAEEEEERELAEAEEERLEEELEEEALEEQLEAEREELLEELLEEEELLE 749
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
224-653 |
7.89e-09 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 59.57 E-value: 7.89e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 224 RRHTELTEQVAELSQQLLAHQLRL-EAARVAAEKIAAITDDAREAKLIATAAAATSGASTAAHAGRLGLLTEIDTRTAAV 302
Cdd:COG1196 323 EELAELEEELEELEEELEELEEELeEAEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQL 402
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 303 VAAEAKARQAADEQATARAEAEACDAALTEATQVLTAVRLRAESARRTLDQLAD--CEEADRLAARLARIDDIEGDRDRV 380
Cdd:COG1196 403 EELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEAAEEEAELEEeeEALLELLAELLEEAALLEAALAEL 482
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 381 CAELSAVTLTEELLSRIERAAAAVDRGGAQLASISAAVEFTAAVDIELGVG-----DQRVSLSAGQSWSVTATGPTEVKV 455
Cdd:COG1196 483 LEELAEAAARLLLLLEAEADYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEaayeaALEAALAAALQNIVVEDDEVAAAA 562
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 456 PGVLTARIVPGATALDFQAKYAAAQQELADALAAGEVADLAAARSADLCRRELLSRRDQLTATLAGLCGDEQVDQLRSRL 535
Cdd:COG1196 563 IEYLKAAKAGRATFLPLDKIRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTL 642
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 536 EQlcagppaELDLVSTDTATARAELDAVEAARIAAEKDCETRRQIAAGAARRLAETSTRATVLQNAAAAESAELGAAMTR 615
Cdd:COG1196 643 AG-------RLREVTLEGEGGSAGGSLTGGSRRELLAALLEAEAELEELAERLAEEELELEEALLAEEEEERELAEAEEE 715
|
410 420 430
....*....|....*....|....*....|....*...
gi 671611461 616 LACERASVGDDELAAKAEADLRVLQTAEQRVIDLADEL 653
Cdd:COG1196 716 RLEEELEEEALEEQLEAEREELLEELLEEEELLEEEAL 753
|
|
| YbjD |
COG3593 |
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
1-48 |
1.11e-08 |
|
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair];
Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 58.09 E-value: 1.11e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 671611461 1 MKLHRLALTNYRGIAHRDVEFPDhGVVVVCGANEIGKSSMVEALDLLL 48
Cdd:COG3593 1 MKLEKIKIKNFRSIKDLSIELSD-DLTVLVGENNSGKSSILEALRLLL 47
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
223-716 |
2.10e-08 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 58.02 E-value: 2.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 223 VRRHTELTEQVAELSQQLLAHQLRLEAARVAAEKIAAITDDAREAKLIATAAAATSGASTAAHAGRLG-LLTEIDTRTAA 301
Cdd:COG1196 231 LLKLRELEAELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEAQAEEYELLAELArLEQDIARLEER 310
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 302 VVAAEAKARQAADEQATARAEAEACDAALTEATQVLTAVRLRAESARRTLDQLADcEEADRLAARLARIDDIEGDRDrvc 381
Cdd:COG1196 311 RRELEERLEELEEELAELEEELEELEEELEELEEELEEAEEELEEAEAELAEAEE-ALLEAEAELAEAEEELEELAE--- 386
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 382 AELSAVTLTEELLSRIERAAAAVDRGGAQLASISAAVEFTAAVDIELGVGDQRVSLSAGQSwsvtatgptevkvpgvlta 461
Cdd:COG1196 387 ELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEEALAELEEEEEEEEEALEEA------------------- 447
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 462 rivpgatALDFQAKYAAAQQELADALAAGEVADLAAARSADLcRRELLSRRDQLTATLAGLCGDEQVDQ--LRSRLEQLC 539
Cdd:COG1196 448 -------AEEEAELEEEEEALLELLAELLEEAALLEAALAEL-LEELAEAAARLLLLLEAEADYEGFLEgvKAALLLAGL 519
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 540 AGPPAELDLVSTDTATARAELDAVEAARIaAEKDCETRRQIAAGAARRLAETSTRATVLQNAAAAESAELGAAMTRLACE 619
Cdd:COG1196 520 RGLAGAVAVLIGVEAAYEAALEAALAAAL-QNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDKIRARAALAAALARGAIG 598
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 620 RASVGDDELAAKAEADLRVLQ-TAEQRVIDLADELAATAPDAVaaelaeaadavelLRERHDEAIRALHEVGVELSVFGT 698
Cdd:COG1196 599 AAVDLVASDLREADARYYVLGdTLLGRTLVAARLEAALRRAVT-------------LAGRLREVTLEGEGGSAGGSLTGG 665
|
490
....*....|....*...
gi 671611461 699 QGRKGKLDAAETEREHAA 716
Cdd:COG1196 666 SRRELLAALLEAEAELEE 683
|
|
| AAA_15 |
pfam13175 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
1-53 |
2.20e-05 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 47.59 E-value: 2.20e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 671611461 1 MKLHRLALTNYRGIAHRDVEFpDHGVVVVCGANEIGKSSMVEALDLLLEYKDR 53
Cdd:pfam13175 1 MKIKSIIIKNFRCLKDTEIDL-DEDLTVLIGKNNSGKSSILEALDIFLNNKEK 52
|
|
| recF |
PRK00064 |
recombination protein F; Reviewed |
1-47 |
2.72e-05 |
|
recombination protein F; Reviewed
Pssm-ID: 234608 [Multi-domain] Cd Length: 361 Bit Score: 47.46 E-value: 2.72e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 671611461 1 MKLHRLALTNYRGIAHRDVEFpDHGVVVVCGANEIGKSSMVEALDLL 47
Cdd:PRK00064 1 MYLTRLSLTDFRNYEELDLEL-SPGVNVLVGENGQGKTNLLEAIYLL 46
|
|
| AAA_23 |
pfam13476 |
AAA domain; |
6-121 |
2.89e-05 |
|
AAA domain;
Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 45.56 E-value: 2.89e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 6 LALTNYRGIAHRDVEFpDHGVVVVCGANEIGKSSMVEALDLLL----EYKDRSTKKEVKQVKPTNADVGS-----EVIAE 76
Cdd:pfam13476 1 LTIENFRSFRDQTIDF-SKGLTLITGPNGSGKTTILDAIKLALygktSRLKRKSGGGFVKGDIRIGLEGKgkayvEITFE 79
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 671611461 77 ISSGPYRFVYRKRFHKRCETELTVLAPRREQLTGDEAHERVRTML 121
Cdd:pfam13476 80 NNDGRYTYAIERSRELSKKKGKTKKKEILEILEIDELQQFISELL 124
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
315-818 |
1.18e-04 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 46.08 E-value: 1.18e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 315 EQATARAEAEACDAALTEATQVLTAVRLRAESARRTLDQLADCEEA--DRLAARLARIDDIEGDRDRVCAELsavtltEE 392
Cdd:COG1196 240 ELEELEAELEELEAELEELEAELAELEAELEELRLELEELELELEEaqAEEYELLAELARLEQDIARLEERR------RE 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 393 LLSRIERAAAAVDRGGAQLASISAAVEFTAAVDIELgvgdqrvslsagqswsvtatgptevkvpgvltarivpgataldf 472
Cdd:COG1196 314 LEERLEELEEELAELEEELEELEEELEELEEELEEA-------------------------------------------- 349
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 473 QAKYAAAQQELADALAAgevADLAAARSADLCRRELLSRRDQLTATLAGLCGDEQVDQLRSRLEQLcagpPAELDLVSTD 552
Cdd:COG1196 350 EEELEEAEAELAEAEEA---LLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEAL----LERLERLEEE 422
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 553 TATARAELDAVEAARIAAEKDcETRRQIAAGAARRLAETSTRATVLQNAAAAESAELGAAMTRLACERASVGDDELAAKA 632
Cdd:COG1196 423 LEELEEALAELEEEEEEEEEA-LEEAAEEEAELEEEEEALLELLAELLEEAALLEAALAELLEELAEAAARLLLLLEAEA 501
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 633 EADLRVLQTAEQRVIDLADELAATAPDAVAAELAEAADAVELLRERHDEAIRALHEVGVELSVFGTQGRKGKLDAAETER 712
Cdd:COG1196 502 DYEGFLEGVKAALLLAGLRGLAGAVAVLIGVEAAYEAALEAALAAALQNIVVEDDEVAAAAIEYLKAAKAGRATFLPLDK 581
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 713 EHAASHHARVGRRARAARLLRSVMARHRDTTRLRYVEPYRAELHRLGRPVFGPSFEVEVDTDLRIRSRTLDDRTV-PYEC 791
Cdd:COG1196 582 IRARAALAAALARGAIGAAVDLVASDLREADARYYVLGDTLLGRTLVAARLEAALRRAVTLAGRLREVTLEGEGGsAGGS 661
|
490 500
....*....|....*....|....*..
gi 671611461 792 LSGGAKEQLGILARLAGAALVAKEDAV 818
Cdd:COG1196 662 LTGGSRRELLAALLEAEAELEELAERL 688
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
189-611 |
1.37e-04 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 45.78 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 189 GRPTGEWSAAVSRLAAAEAAVADCAAAVAEVDDGVRRHTELTEQVAELSQQLLAHQLRLEAARVAAEKIAAITDDAREAK 268
Cdd:COG3903 511 GPDQLAWLARLDAEHDNLRAALRWALAHGDAELALRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAA 590
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 269 LIATAAAATSGASTAAHAGRLGLLTEIDTRTAAVVAAEAKARQAADEQATARAEAEACDAALTEATQVLTAVRLRAESAR 348
Cdd:COG3903 591 AAAAARAAAAAAAAAAAAAAAAAAAAAAAAAALLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAA 670
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 349 RTLDQLADCEEADRLAARLARIDDIEGDRDRVCAELSAVTLTEELLSRIERAAAAVDRGGAQLASISAAVEFTAAVDIEL 428
Cdd:COG3903 671 AAAAAAAAAAAAAAAALAAAAAALAAAAAAAALAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAA 750
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 429 GVGDQRVSLSAGQSWSVTATGPTEVKVPGVLTARIVPGATALDFQAKYAAAQQELADALAAGEVADLAAARSADLCRREL 508
Cdd:COG3903 751 AAAAAAAAAAAALAAAAAAAALAALLLALAAAAAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAL 830
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 509 LSRRDQLTATLAGLCGDEQVDQLRSRLEQLCAGPPAELDLVSTDTATARAELDAVEAARIAAEKDCETRRQIAAGAARRL 588
Cdd:COG3903 831 AAALAAAAAAAAAAAAAAAAAAALAAALAAAAAAAAAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAA 910
|
410 420
....*....|....*....|...
gi 671611461 589 AETSTRATVLQNAAAAESAELGA 611
Cdd:COG3903 911 AAAAAALAAAAAAAAAAAAAAAA 933
|
|
| COG1106 |
COG1106 |
ATPase/GTPase, AAA15 family [General function prediction only]; |
3-106 |
1.50e-03 |
|
ATPase/GTPase, AAA15 family [General function prediction only];
Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 41.57 E-value: 1.50e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 3 LHRLALTNYRGIAHR-DVEFPDHG-----VVVVCGANEIGKSSMVEALDLLLEYKDRSTKKEVKQVKPTNADVGS----- 71
Cdd:COG1106 2 LISFSIENFRSFKDElTLSMVASGlrllrVNLIYGANASGKSNLLEALYFLRNLVLNSSQPGDKLVEPFLLDSESkneps 81
|
90 100 110
....*....|....*....|....*....|....*....
gi 671611461 72 ----EVIAEISSGPYRFVYRKRfhKRCETELTVLAPRRE 106
Cdd:COG1106 82 efeiLFLLDGVRYEYGFELDKE--RIISEWLYFLSTAAQ 118
|
|
| COG4913 |
COG4913 |
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
471-653 |
1.66e-03 |
|
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown];
Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 42.21 E-value: 1.66e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 471 DFQAKYAAAQQELADAlaAGEVADLAAARSADLCRRELLSRRDQLTAT---LAGLcgDEQVDQLRSRLEQLCAGPPaeld 547
Cdd:COG4913 614 ALEAELAELEEELAEA--EERLEALEAELDALQERREALQRLAEYSWDeidVASA--EREIAELEAELERLDASSD---- 685
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 548 lvstDTATARAELDAVEAARIAAEKDCETRRQIAAGAARRLAETSTRATVLQ-NAAAAESAELGAAMTRLACERASVGDD 626
Cdd:COG4913 686 ----DLAALEEQLEELEAELEELEEELDELKGEIGRLEKELEQAEEELDELQdRLEAAEDLARLELRALLEERFAAALGD 761
|
170 180
....*....|....*....|....*...
gi 671611461 627 ELAAKAEADL-RVLQTAEQRVIDLADEL 653
Cdd:COG4913 762 AVERELRENLeERIDALRARLNRAEEEL 789
|
|
| EmrA |
COG1566 |
Multidrug resistance efflux pump EmrA [Defense mechanisms]; |
471-616 |
1.89e-03 |
|
Multidrug resistance efflux pump EmrA [Defense mechanisms];
Pssm-ID: 441174 [Multi-domain] Cd Length: 331 Bit Score: 41.57 E-value: 1.89e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 471 DFQAKYAAAQQELADAlaageVADLAAARSADLCRRELLSRRDQLTATLAGLCGDEQVDQLRSRLEQLCAGPPAELDLVS 550
Cdd:COG1566 80 DLQAALAQAEAQLAAA-----EAQLARLEAELGAEAEIAAAEAQLAAAQAQLDLAQRELERYQALYKKGAVSQQELDEAR 154
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 671611461 551 TDTATARAELDAVEAARIAAEKDCETRRQIAAgaarrlaetsTRATVLQNAAAAESAELGAAMTRL 616
Cdd:COG1566 155 AALDAAQAQLEAAQAQLAQAQAGLREEEELAA----------AQAQVAQAEAALAQAELNLARTTI 210
|
|
| COG3903 |
COG3903 |
Predicted ATPase [General function prediction only]; |
338-716 |
3.05e-03 |
|
Predicted ATPase [General function prediction only];
Pssm-ID: 443109 [Multi-domain] Cd Length: 933 Bit Score: 41.16 E-value: 3.05e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 338 TAVRLRAESARRTLDQLADCEEADRLAARLARIDDIEGDRDRVCAELSAVTLTEELLSRIERAAAAVDRGGAQLASISAA 417
Cdd:COG3903 543 LALRLAAALAPFWFLRGLLREGRRWLERALAAAGEAAAALAAAAALAAAAAAARAAAAAAAAAAAAAAAAAAAAAAAAAA 622
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 418 VEFTAAVDIELGVGDQRVSLSAGQSWSVTATGPTEVKVPGVLTARIVPGATALDFQAKYAAAQQELADALAAGEVADLAA 497
Cdd:COG3903 623 LLLLAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAAAAAAAAALAAAAAALAAAAAAAA 702
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 498 ARSADLCRRELLSRRDQLTATLAGLCGDEQVDQLRSRLEQLCAGPPAELDLVSTDTATARAELDAVEAARIAAEKDCETR 577
Cdd:COG3903 703 LAAAAAAALAAAAAAAAAAAAAAALLAAAAAAALAAAAAAAALALAAAAAAAAAAAAAAALAAAAAAAALAALLLALAAA 782
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 578 RQIAAGAARRLAETSTRATVLQNAAAAESAELGAAMTRLACERASVGDDELAAKAEADLRVLQTAEQRVIDLADELAATA 657
Cdd:COG3903 783 AAALAAAAAAAAAAAAAAAAAAAAAAAAAAAAALAAAAAAAAAAAAALAAALAAAAAAAAAAAAAAAAAAALAAALAAAA 862
|
330 340 350 360 370
....*....|....*....|....*....|....*....|....*....|....*....
gi 671611461 658 PDAVAAELAEAADAVELLRERHDEAIRALHEVGVELSVFGTQGRKGKLDAAETEREHAA 716
Cdd:COG3903 863 AAAAAAALAAAAAAAAAAAAALLAAAAAAAAAAAAAAAAAAALAAAAAAAAAAALAAAA 921
|
|
| AAA_27 |
pfam13514 |
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain ... |
1-47 |
3.14e-03 |
|
AAA domain; This domain is found in a number of double-strand DNA break proteins. This domain contains a P-loop motif.
Pssm-ID: 433272 [Multi-domain] Cd Length: 207 Bit Score: 39.84 E-value: 3.14e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 671611461 1 MKLHRLALTNYRGIAHRDVEFP--DHGVVVVCGANEIGKSSMVEAL-DLL 47
Cdd:pfam13514 1 MRIRRLDLERYGPFTDRSLDFPagGPDLHLIYGPNEAGKSTALRAIsDLL 50
|
|
| Smc |
COG1196 |
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
475-716 |
5.22e-03 |
|
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 5.22e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 475 KYAAAQQELADALAAGEVADLAAARSAdlcRRELLSRRDQLTATLAGLcgDEQVDQLRSRLEQLcagpPAELDLVSTDTA 554
Cdd:COG1196 214 RYRELKEELKELEAELLLLKLRELEAE---LEELEAELEELEAELEEL--EAELAELEAELEEL----RLELEELELELE 284
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 555 TARAELDAVEAARIAAEKDCETRRQIAAGAARRLAETSTRATVLQNAAAAESAELgaamtrlacerasvgdDELAAKAEA 634
Cdd:COG1196 285 EAQAEEYELLAELARLEQDIARLEERRRELEERLEELEEELAELEEELEELEEEL----------------EELEEELEE 348
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 635 DLRVLQTAEQRVIDLADELAATAPDAVAAELAEAADAVELLRERHDEAIRALHEVGVELSVFGTQGRKGKLDAAETEREH 714
Cdd:COG1196 349 AEEELEEAEAELAEAEEALLEAEAELAEAEEELEELAEELLEALRAAAELAAQLEELEEAEEALLERLERLEEELEELEE 428
|
..
gi 671611461 715 AA 716
Cdd:COG1196 429 AL 430
|
|
| ABC_RecF |
cd03242 |
ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that ... |
3-81 |
5.55e-03 |
|
ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213209 [Multi-domain] Cd Length: 270 Bit Score: 39.59 E-value: 5.55e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 671611461 3 LHRLALTNYRGIAHRDVEFPDhGVVVVCGANEIGKSSMVEALDLLLEYK--DRSTKKEVKQVKPTNADV-------GSEV 73
Cdd:cd03242 1 LKSLELRNFRNYAELELEFEP-GVTVLVGENAQGKTNLLEAISLLATGKshRTSRDKELIRWGAEEAKIsavlerqGGEL 79
|
....*...
gi 671611461 74 IAEISSGP 81
Cdd:cd03242 80 ALELTIRS 87
|
|
| |
