|
Name |
Accession |
Description |
Interval |
E-value |
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
1-563 |
0e+00 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 853.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADK----------DSDYRALM-N 309
Cdd:PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPEleildestenDELFKELSeK 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 310 LDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAElikgqsqvgtnvAEPVQIAATPSSDVLLQRMEQLEQELKVL 389
Cdd:PRK05563 321 LDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE------------QAAASPEYDTELEVLLQRVEQLEQELKQL 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 390 KAQGVTAAPTQKTSKKPIRGMQKSKNAFSMQQIAKVLDRANKADIKLLKDHWQEVIDHAKNNdKKSLVSLLQNSEPVAAS 469
Cdd:PRK05563 389 KAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILESLKAQ-RKSLRALLVNSEPVAAS 467
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 470 EDHVLVKFEEEIHCEIVNKDDEKRNNIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQNRKHDNDEMPKQQVQqtDIAQK 549
Cdd:PRK05563 468 EDTVVLAFEYEIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPEDEWQKIREEFLQKHKNEEEEEEEEEEL--PLIPE 545
|
570
....*....|....
gi 686156298 550 AKDLFGEETVHVID 563
Cdd:PRK05563 546 AKELFGEDLVEIID 559
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
3-347 |
0e+00 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 515.96 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 3 YQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGI 82
Cdd:TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 83 TQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 163 PPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTG 242
Cdd:TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGKITYEDVNELLG 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 243 SVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTA----------DKDSDYRALMNLDL 312
Cdd:TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTpsnllavlesEQEFLKELALKLSL 320
|
330 340 350
....*....|....*....|....*....|....*
gi 686156298 313 EMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
Cdd:TIGR02397 321 EFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
|
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
1-348 |
1.66e-162 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 466.21 E-value: 1.66e-162
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQAlyrmyrPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:COG2812 1 MSYQV------PQTFDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALNCENGPTGEPCGECESCR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDA-ASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEP 159
Cdd:COG2812 75 AIAAGSHPDVIEIDAeASNIGVDDIRELIEKVSYAPVEGRYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEP 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 160 HKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGdgtltLQDAln 239
Cdd:COG2812 155 QKLLPTILSRCQRFDFRRLPPEEIAEHLAKIAEREGIEIEPEALALIARAADGSMRDALSLLDQAIAFG-----LLDR-- 227
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 240 vtgsvhDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADKD-----SDYRALM-----N 309
Cdd:COG2812 228 ------RELLLDLLEALLAGDVAALLALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAellvnEDERERLqelarR 301
|
330 340 350
....*....|....*....|....*....|....*....
gi 686156298 310 LDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAE 348
Cdd:COG2812 302 LSPERLLRAIQILLEARRELERNVNPRLALEMLLLRLAR 340
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
1-559 |
2.84e-131 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 399.96 E-value: 2.84e-131
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSND-GEPCNECaic 79
Cdd:PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDlLEPCQEC--- 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 80 kgITQGTNS-DVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTE 158
Cdd:PRK07133 80 --IENVNNSlDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTE 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 159 PHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDAL 238
Cdd:PRK07133 158 VHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVE 237
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 239 NVTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIM-NKTADKD----SDYRALMNL--D 311
Cdd:PRK07133 238 ELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIfNKTKDNSlleyYSEEDLEKLkiD 317
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 312 LEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAELiKGQSQVGTNVAEPVQIAATPSSDVLLQRMEQLEQELKVLKA 391
Cdd:PRK07133 318 DDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLAL-SELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKS 396
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 392 QGVTAAPTQKTSKKPIRGMQKSKNAF-SMQQIAKVLDRANKADIKLLKDHWQEVIDHAKNNDKKSL--VSLLQNSEPVAA 468
Cdd:PRK07133 397 DTKNLEEGFETKDNKNKNSSFINKTEnILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTeiAQLDENQNLIDT 476
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 469 SEDHVLVKFEEEIHCEIVNKDDE--KRNNIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQNRKHDNDEMPKQQVQQTDI 546
Cdd:PRK07133 477 GEFDLENNFSNSFNPENGNKIDEniNETFDTSTISANLSENKTNFAQSFNNKDTNLINSEIPIDLIKDTITINNSQKNVK 556
|
570
....*....|...
gi 686156298 547 AQKAKDLFGEETV 559
Cdd:PRK07133 557 KNGNKDYLSVEEV 569
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
1-565 |
2.07e-125 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 380.31 E-value: 2.07e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSN-DGEPCNECAIC 79
Cdd:PRK14950 1 MTVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDpKGRPCGTCEMC 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 80 KGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEP 159
Cdd:PRK14950 81 RAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEV 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 160 HKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALN 239
Cdd:PRK14950 161 HKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 240 VTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDT-IMNKTADKD-----SDYRALM----- 308
Cdd:PRK14950 241 LLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVmLLNSGADRSlldltADEKAALqkvsq 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 309 NLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKL------AELIKGQSQVGTNVAEPVQIAATPSSDVLLQRMEQL 382
Cdd:PRK14950 321 IANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEAllvpvpAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPK 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 383 EQELKVLKAQGVT-------------AAPTQKTSKKPIRGMQKSKNAFSMQQIAKVLDrANKADIKLLKDHWQEVIDHAK 449
Cdd:PRK14950 401 EPVRETATPPPVPprpvappvphtpeSAPKLTRAAIPVDEKPKYTPPAPPKEEEKALI-ADGDVLEQLEAIWKQILRDVP 479
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 450 NNDKKslVSLLQNS--EPVAASEDHVLVKFEEEIHCEIVNKdDEKRNNIESVVCNIVNKNVKVVGVPSDQWQRVRTEYLQ 527
Cdd:PRK14950 480 PRSPA--VQALLSSgvRPVSVEKNTLTLSFKSKFHKDKIEE-PENRKITEELLSNFVGKTCAVRCTIEEKSEEPGDLREQ 556
|
570 580 590
....*....|....*....|....*....|....*...
gi 686156298 528 NRKHDNDEMPKQqvqqtdiaqkAKDLFGEETVHVIDEE 565
Cdd:PRK14950 557 IREARKDHLVKA----------AQNIFDAQIISVEEKN 584
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
1-479 |
9.00e-125 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 378.32 E-value: 9.00e-125
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14965 1 MSYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14965 81 EITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14965 161 KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAEL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADKDSD-----------YRALMN 309
Cdd:PRK14965 241 LGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDlldlseaelaeLRAQAA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 310 -LDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAELIKGqSQVGTNVAEPVQI---AATPSSDVLLQRMEQLEQE 385
Cdd:PRK14965 321 aADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLAPG-APVSELLDRLEALergAPAPPSAAWGAPTPAAPAA 399
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 386 LKVLKAQGVT-AAPTQKTSKKPIRGMQKSKNAFSMQQIAKVLDRANKAdikllkDHWQEVIDHAKnNDKKSLVSLLQNSE 464
Cdd:PRK14965 400 PPPAAAPPVPpAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAG------DRWRAFVAFVK-GKKPALGASLEQGS 472
|
490
....*....|....*
gi 686156298 465 PVAASEDHVLVKFEE 479
Cdd:PRK14965 473 PLGVSAGLLEIGFPE 487
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
1-454 |
3.80e-122 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 368.77 E-value: 3.80e-122
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADKDS------DYRALMNLDLEM 314
Cdd:PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEevfqveDFYRKLEKPLEA 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 315 LYHMIDLINDTLVSIR-FSVNQNVHFEVLLVKLAELIKGQSQVGtNVAEPVQIAATPssdvllQRMEQLEQELKVLKAQG 393
Cdd:PRK14953 321 LLYLEDVINKAFSEARtRDPLRAYELAILKLLYVKDIVPISELL-KEGSKQETKEQP------EKKEEEKEELDIDKIIL 393
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 686156298 394 VTAAPTQKTSKKPIRGMQ-KSKNAFSMQQIAKVLDRANKADIKLLK----DHWQEVIDHAKNNDKK 454
Cdd:PRK14953 394 QIIKNEGKIISAILKNAEiKEEEGKITIKVEKSEEDTLDLEIKSIKkyfpFIEFEEVKKEKEKEKE 459
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
3-407 |
3.46e-120 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 362.17 E-value: 3.46e-120
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 3 YQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLN-SNDGEPCNECAICKG 81
Cdd:PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNpTEDQEPCNQCASCKE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 82 ITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHK 161
Cdd:PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 162 IPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVT 241
Cdd:PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKAL 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 242 GSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADKDSdyRALMNLDLEMLYHMIDL 321
Cdd:PRK06305 244 GLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLS--SVATKYSSEQLLEIIDF 321
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 322 INDTLVSIRFSVNQNVHFEVLLVKLaelikgqsqvgtnvaepVQIAATPSSDVLLQRMEQLEQELKVL--KAQGVTAAPT 399
Cdd:PRK06305 322 LGESAKHIQLTIFEKTFLETVIIHL-----------------IRIYQRPTLSQLVSQIKSPAFTQLRLesCPPQIKSSNS 384
|
....*...
gi 686156298 400 QKTSKKPI 407
Cdd:PRK06305 385 QQTVSSPQ 392
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
1-445 |
2.57e-119 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 365.82 E-value: 2.57e-119
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSnDG---EPCNECA 77
Cdd:PRK14948 1 MAYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNS-DKptpEPCGKCE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 78 ICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATT 157
Cdd:PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 158 EPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQaIAFGDGTLTLQDA 237
Cdd:PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQ-LSLLPGPITPEAV 238
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 238 LNVTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADKDSDYRALM--------- 308
Cdd:PRK14948 239 WDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSqqtwdelck 318
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 309 ---NLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAelikGQSQVGTNVAEPVQIAATPSSDVLLQRMEQLEQE 385
Cdd:PRK14948 319 lakQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLL----PSAFISEIANASAPANPTPAPNPSPPPAPIQPSA 394
|
410 420 430 440 450 460
....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 386 LKVLKAQGVTAAPTQKTSKKPIrgmQKSKNAFSMQQIAKvlDRANKADIKLLKDHWQEVI 445
Cdd:PRK14948 395 PKTKQAATTPSPPPAKASPPIP---VPAEPTEPSPTPPA--NAANAPPSLNLEELWQQIL 449
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
4-286 |
3.19e-115 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 350.22 E-value: 3.19e-115
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 4 QALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGIT 83
Cdd:PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 QGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIP 163
Cdd:PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 164 PTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGS 243
Cdd:PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241
|
250 260 270 280
....*....|....*....|....*....|....*....|...
gi 686156298 244 VHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMI 286
Cdd:PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAI 284
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
2-487 |
1.15e-112 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 348.30 E-value: 1.15e-112
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 2 NYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLN-SNDGEPCNECAICK 80
Cdd:PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNlTADGEACNECESCV 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALnv 240
Cdd:PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVI-- 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 tgsvhdEALNHLFED--------IVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTAD-----------KD 301
Cdd:PRK14971 241 ------ENLNILDYDyyfrltdaLLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAAtlqllevgesiRQ 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 302 SDYRALMNLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAELIKG----------------------------- 352
Cdd:PRK14971 315 RYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQKgddasggrgpkqhikpvftqpaaapqpsa 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 353 -------QSQVGTNVAEPVQIAATPSSDVLLQRMEQLEQELKVLKAQGV--TAAPTQKTSKKPIRGMQKSKNAFSMQQIA 423
Cdd:PRK14971 395 aaaaspsPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTApqAVRPAQFKEEKKIPVSKVSSLGPSTLRPI 474
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 686156298 424 KVLDRANKADIKL--------------LKDHWQEvIDHAKNNDKKSLVSLLQNSEPVAASEDHVLVKFEEEIHCEIVN 487
Cdd:PRK14971 475 QEKAEQATGNIKEaptgtqkeifteedLQYYWQE-FAGTRPQEEKALKETMINCRPKLLNGTTFEVAVDNELQEKELT 551
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
1-286 |
1.85e-110 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 343.77 E-value: 1.85e-110
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMI 286
Cdd:PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELL 286
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
1-349 |
3.42e-108 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 335.20 E-value: 3.42e-108
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK06647 1 MSYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADK---------DSDYRALMNLD 311
Cdd:PRK06647 241 MGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKneafigikaERLPEKLREFD 320
|
330 340 350
....*....|....*....|....*....|....*...
gi 686156298 312 LEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEL 349
Cdd:PRK06647 321 LSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRL 358
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
1-498 |
3.18e-105 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 328.73 E-value: 3.18e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK05896 1 MSEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK05896 81 SINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK05896 161 KIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKT 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKtadKDSDYRALMNLDLEMLyHMID 320
Cdd:PRK05896 241 FGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQ---KTKNINLLKKLSKEQL-KTLN 316
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 321 LINDTLVSIRFSVNqnvhfeVLLVKLAELIKGQSQVGTNVAEpVQIAATPSSDVLLQRMEQLEQELKVlKAQGVTAAPTQ 400
Cdd:PRK05896 317 LEKQKLLSIEFNTN------FLLNNFVSLINRLKASVNQVFE-FEIYLYKIINANPDKLENKKIEISI-KPEKKTINNSQ 388
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 401 KTSKKPIrgmqksknafsmqqiaKVLDRANKADIKLLKDHWQEVIDHAKNNDkkslvsllQNSEPVAASEDHVLVKFEEE 480
Cdd:PRK05896 389 IITTKKI----------------NIVEESNKNSVHFDTLYKTKIFYHKKKIN--------QNNKEQDIKKEELLEKEFVK 444
|
490
....*....|....*...
gi 686156298 481 IHcEIVNKDDEKRNNIES 498
Cdd:PRK05896 445 KS-EKIPKNDELLDNLEL 461
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
3-265 |
4.58e-103 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 323.01 E-value: 4.58e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 3 YQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSnDG------EPCNEC 76
Cdd:PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGP-DGdggptiDLCGVG 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 77 AICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILAT 156
Cdd:PRK09111 90 EHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 157 TEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLT--- 233
Cdd:PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTaea 249
|
250 260 270
....*....|....*....|....*....|....*...
gi 686156298 234 ------LQDalnvTGSVHDealnhLFEDIVQGDVQSSF 265
Cdd:PRK09111 250 vrdmlgLAD----RARVID-----LFEALMRGDVAAAL 278
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
1-482 |
1.25e-102 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 322.66 E-value: 1.25e-102
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDG--------EP 72
Cdd:PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDpvylqevtEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 73 CNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIF 152
Cdd:PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 153 ILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGT- 231
Cdd:PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSe 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 232 ----LTLQDALNVTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKE----VNRLIND-----MIYFVRDT--IMNK 296
Cdd:PRK14954 241 aekvIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDeqdfLEKLIEHfrnflVLYNLRSTrlIERP 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 297 TADKDSDYRALMNLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAELIKGQSQVGTNVAE-------------- 362
Cdd:PRK14954 321 ESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELVRNDGGVAPSPAGspdvkkkapepdlp 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 363 -----------------------------PVQIAATPSSdVLLQRMEQLEQELKVLKAQGVT--AAPTQKTSKKPIRGMQ 411
Cdd:PRK14954 401 qpdrhpgpakpeapgarpaelpspasaptPEQQPPVARS-APLPPSPQASAPRNVASGKPGVdlGSWQGKFMNFTRNGSR 479
|
490 500 510 520 530 540 550
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 686156298 412 KSKNAFSMQQIAKVLDRANKADIKLLKDHWQEVIDHAKNNDKKSLVSLLQNSEPVAASEDHVLV-------KFEEEIH 482
Cdd:PRK14954 480 KQPVQASSSDAAQTGVFEGVAELEKLRMEWNQFLEHLLKKGQKVLVTHLRSCELTSCSPHGVVVmtccrkfSYEELMQ 557
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
1-365 |
3.78e-100 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 308.75 E-value: 3.78e-100
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDG--------EP 72
Cdd:PRK14955 1 MSYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDadylqevtEP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 73 CNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIF 152
Cdd:PRK14955 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 153 ILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAF----- 227
Cdd:PRK14955 161 IFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFsvese 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 228 GDGTLTLQDALNVTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIM-----------NK 296
Cdd:PRK14955 241 GEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVvhnlrstrlveRP 320
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 686156298 297 TADKDSDYRALMNLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAELIKGQSQVGTNVAEPVQ 365
Cdd:PRK14955 321 DAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIGHPAPTAAAAPTGGAQ 389
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
1-260 |
1.26e-99 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 317.42 E-value: 1.26e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240
|
250 260
....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGD 260
Cdd:PRK08691 241 IGAVDKQYLYELLTGIINQD 260
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
1-260 |
2.78e-99 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 310.91 E-value: 2.78e-99
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240
|
250 260
....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGD 260
Cdd:PRK14969 241 LGAIDQDYLFALLEALLAQD 260
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
2-348 |
2.14e-97 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 304.56 E-value: 2.14e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 2 NYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKG 81
Cdd:PRK14956 4 THEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 82 ITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHK 161
Cdd:PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 162 IPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVT 241
Cdd:PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKMI 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 242 GSVHDEALNHLFEDIVQGDVQS-SFKKYHQFIAEGKEVNRLINDMIYFVR--DTIMNKTADKDS-------------DYR 305
Cdd:PRK14956 244 GYHGIEFLTSFIKSLIDPDNHSkSLEILESLYQEGQDIYKFLWDSIEFTHtlNLIRDSLADRESvnfpkedlqkmksDFE 323
|
330 340 350 360
....*....|....*....|....*....|....*....|....*..
gi 686156298 306 AL----MNLDLEMLYHMIDLINdtLVSIRFSVNQNVHFEVLLVKLAE 348
Cdd:PRK14956 324 NVdsskLNFLSGKLFEIYEKIK--TIRLRNSFEIKVFTEIQIKKLVE 368
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
5-275 |
4.61e-97 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 304.46 E-value: 4.61e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 5 ALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINClNSNDGEPCNECAICKGITQ 84
Cdd:PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC-SGEDPKPCGECESCLAVRR 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 85 GTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPP 164
Cdd:PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 165 TIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGdGTLTLQDALNVTGSV 244
Cdd:PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALG-TPVTRKQVEEALGLP 240
|
250 260 270
....*....|....*....|....*....|.
gi 686156298 245 HDEALNHLFEDIVQGDVQSSFKKYHQFIAEG 275
Cdd:PRK14963 241 PQERLRGIAAALAQGDAAEALSGAAQLYRDG 271
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
4-559 |
1.34e-94 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 298.87 E-value: 1.34e-94
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 4 QALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGIT 83
Cdd:PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 QGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIP 163
Cdd:PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 164 PTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGS 243
Cdd:PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 244 VHDEALNHLFEDIVQGDVQSSFKKYHQFiaEGKEVNRLINDMIYFVRDtimnKTADKDSDYRALMnldLEMLYHMIDLIN 323
Cdd:PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKE----KFLSKDSEFSILL---YERFFRILSSAK 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 324 DTLvsirfSVNQNVHFEVLLV--KLAELIKGQSqvgtnvaepvqiaatpssdvLLQRMEQLEQELKVLKAQGVTAAPTQK 401
Cdd:PRK08451 313 SLL-----KEGADDGFVLLLMlfKMKEALKLKE--------------------IDDAIEELEQEKTTAIIPLNTPAPIIP 367
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 402 TSKKPIRGMQKSKNAFSMQQiAKVLDRaN-------KADIKL--LKDHWQEVIDHAKNNDKKslvsLLQNSEPVAASEDH 472
Cdd:PRK08451 368 NTEKEEAKDRIFKNLFEQLL-DKIYDR-NyelgecfEKNIRFidFDSNTLTWESNAQGEDKE----LLRKGFKIIKEIVD 441
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 473 VLVKFEEEIhceIVNKDDEKRNNIESVVCNIVNKNVKVVGVPS-------DQWQRVRTEYLQNRKHDNDEMPKQQVQQTD 545
Cdd:PRK08451 442 EVFGKGAKI---KIQKALKSAENPLQSLKEFKPSNEKKKIDTEstaemleEEAKKDDEEVQETQLKEATELQEFMINNED 518
|
570
....*....|....
gi 686156298 546 IAQKAKDLFGEETV 559
Cdd:PRK08451 519 LIEEAKELFGIKSI 532
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
1-260 |
1.63e-92 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 298.33 E-value: 1.63e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSnDG------EPCN 74
Cdd:PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGA-DGeggitaQPCG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 75 ECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFIL 154
Cdd:PRK12323 80 QCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFIL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 155 ATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTL 234
Cdd:PRK12323 160 ATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSE 239
|
250 260
....*....|....*....|....*.
gi 686156298 235 QDALNVTGSVHDEALNHLFEDIVQGD 260
Cdd:PRK12323 240 EAVRGMLGAIDQSYLVRLLDALAAED 265
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
1-260 |
2.16e-92 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 295.86 E-value: 2.16e-92
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSnDG------EPCN 74
Cdd:PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGP-DGqggitaTPCG 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 75 ECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFIL 154
Cdd:PRK14951 80 VCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVL 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 155 ATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTL 234
Cdd:PRK14951 160 ATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQE 239
|
250 260
....*....|....*....|....*.
gi 686156298 235 QDALNVTGSVHDEALNHLFEDIVQGD 260
Cdd:PRK14951 240 AAVRQMLGSVDRSHVFRLIDALAQGD 265
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
8-349 |
3.88e-91 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 284.46 E-value: 3.88e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 8 RMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEpcnecaickgitQGTN 87
Cdd:PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPN------------EDFS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 88 SDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTII 167
Cdd:PRK14970 77 FNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTIL 156
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 168 SRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDE 247
Cdd:PRK14970 157 SRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYD 236
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 248 ALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKT-----------ADKDSDYRALMNLDLEMLY 316
Cdd:PRK14970 237 TYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTpatiallevgeQAKKRYEVQSQKVSQSFLL 316
|
330 340 350
....*....|....*....|....*....|...
gi 686156298 317 HMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEL 349
Cdd:PRK14970 317 SGIDIANDCDLKYKLSKNQRLLVELALMQLASI 349
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
1-280 |
3.99e-91 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 300.10 E-value: 3.99e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 686156298 241 TGSVHDEALNHLFEDIVQGDV----QSSfKKYHQFIAEGKEVNR 280
Cdd:PRK14949 241 LGSIDEQHVIALLKALTDADIgvlmQTC-AQVLAFGADAQEVLR 283
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
10-303 |
3.77e-90 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 286.30 E-value: 3.77e-90
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 10 YRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSD 89
Cdd:PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPD 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 90 VIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR 169
Cdd:PRK14964 87 VIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 170 AQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTGSVHDEAL 249
Cdd:PRK14964 167 CQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCVDKHIL 246
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 686156298 250 NHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLIN--DMIYFVRDTIMNKTADKDSD 303
Cdd:PRK14964 247 EDLVEAILLGDAQSALNVFRELCNTSNPVIILEGmlQIIYEICYFSITKEIDFLLG 302
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
1-296 |
1.07e-88 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 278.23 E-value: 1.07e-88
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14961 1 MNYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14961 81 EIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14961 161 KIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDM 240
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*.
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNK 296
Cdd:PRK14961 241 LGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQ 296
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
4-490 |
3.57e-87 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 281.00 E-value: 3.57e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 4 QALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGIT 83
Cdd:PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 QGTNS--DVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHK 161
Cdd:PRK14952 81 PNGPGsiDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 162 IPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIA-FGDGTLTLQDALNV 240
Cdd:PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAgAADTHVTYQRALGL 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTAdKDSDYRALMNLDLEMLYHMID 320
Cdd:PRK14952 241 LGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAV-PDAAARGVVDAPEDVLERMRE 319
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 321 LindtlvSIRFSVNQNVHF-EVLLVKLAEL---IKGQSQVGTNVAEPVQIAATPSSDVLLQRMEQLEQEL-KVLKAQGVT 395
Cdd:PRK14952 320 Q------AARIGLATLTRYaEVVQAGLGEMrgaTAPRLLLEVVCARLLLPSASDAESALLQRVERIETRLdMSIPANLLH 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 396 AAPTQKTSKKPIRGMQKSKNAFSMQQIAKVLDRANKADIKLLKDHWQEVIDHAKNNDKKSLVsLLQNSEPVAASEDHVLV 475
Cdd:PRK14952 394 NAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPASGEPNAAAVRSMWSTVRDKVRQRSRTTEV-MLAGATVRALEGNTLVL 472
|
490
....*....|....*....
gi 686156298 476 KFEEEIH----CEIVNKDD 490
Cdd:PRK14952 473 THESAPLarrlSEQRNADV 491
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
1-312 |
2.98e-86 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 280.03 E-value: 2.98e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADKdsdyRALMNLDL 312
Cdd:PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGE----AALASLDL 308
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
5-249 |
4.63e-84 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 278.79 E-value: 4.63e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 5 ALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGI-T 83
Cdd:PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALaP 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 QGTNS-DVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:PRK07764 84 GGPGSlDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 163 PPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIA-FGDGTLTLQDALNVT 241
Cdd:PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAgAGPEGVTYERAVALL 243
|
....*...
gi 686156298 242 GsVHDEAL 249
Cdd:PRK07764 244 G-VTDSAL 250
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-286 |
2.29e-82 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 271.54 E-value: 2.29e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 3 YQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGI 82
Cdd:PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 83 TQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 163 PPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTG 242
Cdd:PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 686156298 243 SVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMI 286
Cdd:PRK14960 242 LIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLI 285
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
1-227 |
3.61e-82 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 274.03 E-value: 3.61e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAF 227
Cdd:PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAY 227
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
1-260 |
9.26e-77 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 252.69 E-value: 9.26e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14957 1 MSYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14957 81 AINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14957 161 KIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQM 240
|
250 260
....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGD 260
Cdd:PRK14957 241 LGIIDSEEVYSIINAIIDND 260
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
2-345 |
4.11e-73 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 242.07 E-value: 4.11e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 2 NYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCL----NSNDGEPCNECA 77
Cdd:PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSalitENTTIKTCEQCT 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 78 ICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATT 157
Cdd:PRK06645 87 NCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 158 EPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFG---DGTLTL 234
Cdd:PRK06645 167 EVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSaksDNIISP 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 235 QDALNVTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTADKDS-------DYRA- 306
Cdd:PRK06645 247 QVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSlpiyesfNDRTk 326
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 686156298 307 --LMNLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVK 345
Cdd:PRK06645 327 siLDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIK 367
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
1-407 |
1.36e-70 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 235.39 E-value: 1.36e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICK 80
Cdd:PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 GITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPH 160
Cdd:PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 161 KIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNV 240
Cdd:PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 241 TGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNKTA-----DKDSD-YRALMN-LDLE 313
Cdd:PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVpealiENDSEqLRQLAKlLDRE 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 314 --MLYHMIDLINDTlvSIRFSVNQNVHFEVLLVK-LAELIKGQSQVGTNVAEPVQIAATPSSDvllqrMEQLEQELKVLK 390
Cdd:PRK14958 321 dvQLFYQIGLIGQR--DLAYSPTPQTGFEMTLLRmLAFYPSAANAIPETESKEAVVTPTPKSS-----ETSWPQLLSQLK 393
|
410
....*....|....*..
gi 686156298 391 AQGVTAAPTQKTSKKPI 407
Cdd:PRK14958 394 LTGATLALAQQCSLKEL 410
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
21-349 |
6.10e-61 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 203.28 E-value: 6.10e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 21 QEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAiCKGITQGTNSDVIEIDAASNN- 99
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLCENPEGGKACGQCH-SRLMAAGNHPDLLELNPEEKSd 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 100 --GVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKA 177
Cdd:COG0470 80 qiGIDQIRELGEFLSLTPLEGGRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRP 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 178 ISLDQIVERLkfvadaQALEYEEDALAFIAKASEGGMRDALSIMdQAIAFGDgtlTLQDALNVTGSVHD--EALNHLFED 255
Cdd:COG0470 160 PSEEEALAWL------REEGVDEDALEAILRLAGGDPRAAINLL-QALAGRK---ELLEDLAALLSRDRalELLDALLKA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 256 IVQgdvqssfkkyhqfiaegkevnRLINDMIYFVRDTIMNKTADKDsdyralmnldlemLYHMIDLINDTLVSIRFSVNQ 335
Cdd:COG0470 230 EAL---------------------ELLDWLLKWLLDNLPLEYAGED-------------LARAYEALSEADRRLGRYAND 275
|
330
....*....|....
gi 686156298 336 NVHFEVLLVKLAEL 349
Cdd:COG0470 276 RLLLEALLAKLGRL 289
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
26-212 |
1.66e-56 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 187.83 E-value: 1.66e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 26 KTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSDVIEIDAASNN-GVDEI 104
Cdd:TIGR00678 2 QQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLCEQRGGGEPCGECHSCRLIEAGNHPDLHRLEPEGQSiKVDQV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 105 RNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Cdd:TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEALL 161
|
170 180
....*....|....*....|....*...
gi 686156298 185 ERLKfvadAQALEYEEDALAfiAKASEG 212
Cdd:TIGR00678 162 QWLI----RQGISEEAAELL--LALAGG 183
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
20-179 |
5.11e-56 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 185.49 E-value: 5.11e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 20 GQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSDVIEIDAASNN 99
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFCEEPGDDLPCGQCRSCRRIESGNHPDLVIIEPEGQS 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 100 -GVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAI 178
Cdd:pfam13177 81 iKIDQIRELQKEFSKSPYEGKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKPL 160
|
.
gi 686156298 179 S 179
Cdd:pfam13177 161 S 161
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
21-302 |
6.96e-43 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 156.24 E-value: 6.96e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 21 QEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSDVIEI--DAASN 98
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVapDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 99 NgVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAI 178
Cdd:PRK08058 91 K-KDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPL 169
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 179 SLDQIVERLkfvADAQALEYeedaLAFIAKASEGGMRDALSIMD-----QAIAfgdgtltlqdalnvtgsvhdeALNHLF 253
Cdd:PRK08058 170 PPESLIQRL---QEEGISES----LATLLAGLTNSVEEALALSEddwfaQARA---------------------LVIKLY 221
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 686156298 254 EDIVQGDVQSSFKKYHQFIAEGKEVNR--LINDMI-YFVRDTIMNKTADKDS 302
Cdd:PRK08058 222 EALHEKDLQSFVFVQEKWMPLFKEKDQqqLGLDLLlLIYRDLLYLQLGEEDR 273
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
10-349 |
1.31e-36 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 138.47 E-value: 1.31e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 10 YRPQSFDDVVGQEHVTKTLRNAISKEKQSHaYIFSGPRGTGKTSIAKVFAKAINclnsndGEPCNEcaickgitqgtnsD 89
Cdd:PRK00440 11 YRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELY------GEDWRE-------------N 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 90 VIEIDAASNNGVDEIRN-IRDKVKYAPS-ESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTII 167
Cdd:PRK00440 71 FLELNASDERGIDVIRNkIKEFARTAPVgGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQ 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 168 SRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMdQAIAFGDGTLTLQDALNVTGSVHDE 247
Cdd:PRK00440 151 SRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINAL-QAAAATGKEVTEEAVYKITGTARPE 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 248 ALNHLFEDIVQGDvqssfkkyhqFIAEGKEVNRLI-------NDMIyfvrdtimnktadkDSDYRALMNLDL--EMLYHM 318
Cdd:PRK00440 230 EIREMIELALNGD----------FTEAREKLRDLMidyglsgEDII--------------KQIHREVWSLDIpeELKVEL 285
|
330 340 350
....*....|....*....|....*....|.
gi 686156298 319 IDLINDTLVSIRFSVNQNVHFEVLLVKLAEL 349
Cdd:PRK00440 286 IDAIGEADFRITEGANERIQLEALLAKLALL 316
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
15-212 |
2.56e-32 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 128.49 E-value: 2.56e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 15 FDDVVGQEHVTKTLRNAISKEKQ---------SHAYIFSGPRGTGKTSIAKVFAKAINClnSNDGEP-CNECAICKGITQ 84
Cdd:PRK07940 4 WDDLVGQEAVVAELRAAARAARAdvaaagsgmTHAWLFTGPPGSGRSVAARAFAAALQC--TDPDEPgCGECRACRTVLA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 85 GTNSDV--IEIDAASNnGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKI 162
Cdd:PRK07940 82 GTHPDVrvVAPEGLSI-GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDV 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 686156298 163 PPTIISRAQRFDFKAISLDQIVERLkfvADAQALEyEEDAlAFIAKASEG 212
Cdd:PRK07940 161 LPTIRSRCRHVALRTPSVEAVAEVL---VRRDGVD-PETA-RRAARASQG 205
|
|
| PRK13342 |
PRK13342 |
recombination factor protein RarA; Reviewed |
7-243 |
1.34e-31 |
|
recombination factor protein RarA; Reviewed
Pssm-ID: 237355 [Multi-domain] Cd Length: 413 Bit Score: 126.74 E-value: 1.34e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 7 YRMyRPQSFDDVVGQEHVT---KTLRNAISKEKQSHAyIFSGPRGTGKTSIAKVFAKAinclnsndgepcnecaickgit 83
Cdd:PRK13342 4 ERM-RPKTLDEVVGQEHLLgpgKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGA---------------------- 59
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 qgTNSDVIEIDAAsNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHmlttgAFN-----ALLKTLEEppAHAIFILATTE 158
Cdd:PRK13342 60 --TDAPFEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIH-----RFNkaqqdALLPHVED--GTITLIGATTE 129
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 159 -P-HKIPPTIISRAQRFDFKAISLDQIVERLKfvadaQALE--------YEEDALAFIAKASEGGMRDALSIMDQAIAFG 228
Cdd:PRK13342 130 nPsFEVNPALLSRAQVFELKPLSEEDIEQLLK-----RALEdkerglveLDDEALDALARLANGDARRALNLLELAALGV 204
|
250
....*....|....*
gi 686156298 229 dGTLTLQDALNVTGS 243
Cdd:PRK13342 205 -DSITLELLEEALQK 218
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
10-261 |
2.81e-31 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 123.95 E-value: 2.81e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 10 YRPQSFDDVVGQEHVTKTLRNAISKEKQSHaYIFSGPRGTGKTSIAKVFAKAINclnsndGEPCNEcaickgitqgtnsD 89
Cdd:PRK12402 9 YRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELY------GDPWEN-------------N 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 90 VIEIDAAS--NNGVDEIRN-----------------IRDKVK--------YAPSESKYKVYIIDEVHMLTTGAFNALLKT 142
Cdd:PRK12402 69 FTEFNVADffDQGKKYLVEdprfahflgtdkrirssKIDNFKhvlkeyasYRPLSADYKTILLDNAEALREDAQQALRRI 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 143 LEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALsIMD 222
Cdd:PRK12402 149 MEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAI-LTL 227
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 686156298 223 QAIAFGDGTLTLQDALNVTGSV-HDEALNHLFEDIVQGDV 261
Cdd:PRK12402 228 QTAALAAGEITMEAAYEALGDVgTDEVIESLLDAAEAGDF 267
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
15-212 |
3.04e-31 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 123.47 E-value: 3.04e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 15 FDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAIncLNSNDGEPCNECAICKG------------I 82
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL--LSQGSPSKNIRRRLEEGnhpdllwveptyQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 83 TQGT--NSDVIEIDAASNNG-----VDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEpPAHAIFILA 155
Cdd:PRK07399 81 HQGKliTASEAEEAGLKRKAppqirLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTLILI 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 686156298 156 TTEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEG 212
Cdd:PRK07399 160 APSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPG 216
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
14-348 |
1.95e-27 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 112.43 E-value: 1.95e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 14 SFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAInclnsndgepcnecaicKGITQGTNS-DVIE 92
Cdd:PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKI-----------------LGKSQQREYvDIIE 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 93 IDAASNN--GVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170
Cdd:PRK05564 65 FKPINKKsiGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRC 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 171 QRFDFKAISldqiverlkfvadaqaleyEEDALAFIAKASEGGMRDAlsiMDQAIAFGDGtltlqdalnVTGSV----HD 246
Cdd:PRK05564 145 QIYKLNRLS-------------------KEEIEKFISYKYNDIKEEE---KKSAIAFSDG---------IPGKVekfiED 193
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 247 EALNHL-------FEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIMNK---------TADKDSDYRAL-MN 309
Cdd:PRK05564 194 DSLKNIrnmsleiLKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKetgneeliiNIDKIEDIKHIsEK 273
|
330 340 350
....*....|....*....|....*....|....*....
gi 686156298 310 LDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAE 348
Cdd:PRK05564 274 FSYKKLNKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQE 312
|
|
| RarA |
COG2256 |
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, ... |
7-242 |
5.30e-27 |
|
Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair];
Pssm-ID: 441857 [Multi-domain] Cd Length: 439 Bit Score: 113.61 E-value: 5.30e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 7 YRMyRPQSFDDVVGQEHVT---KTLRNAIsKEKQSHAYIFSGPRGTGKTSIAKVFAKAinclnsndgepcnecaickgit 83
Cdd:COG2256 17 ERM-RPRTLDEVVGQEHLLgpgKPLRRAI-EAGRLSSMILWGPPGTGKTTLARLIANA---------------------- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 qgTNSDVIEIDAASnNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHmlttgAFN-----ALLKTLEEppAHAIFILATTE 158
Cdd:COG2256 73 --TDAEFVALSAVT-SGVKDIREVIEEARERRAYGRRTILFVDEIH-----RFNkaqqdALLPHVED--GTITLIGATTE 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 159 -P-HKIPPTIISRAQRFDFKAISLDQIVERLK-FVAD------AQALEYEEDALAFIAKASEGGMRDALSIMDQAIAF-- 227
Cdd:COG2256 143 nPsFEVNSALLSRCRVFVLKPLSEEDLEQLLErALADderglgGYKLELDDEALEALARLADGDARRALNALELAVLSap 222
|
250
....*....|....*..
gi 686156298 228 --GDGTLTLQDALNVTG 242
Cdd:COG2256 223 pdGVIEITLELVEEALQ 239
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
10-294 |
4.77e-25 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 105.97 E-value: 4.77e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 10 YRPQSFDDVVGQEHVTKTLRnAISKEKQSHAYIFSGPRGTGKTSiaKVFAKAINCLNSNDGEPcnecaickgitqgtnsd 89
Cdd:PLN03025 7 YRPTKLDDIVGNEDAVSRLQ-VIARDGNMPNLILSGPPGTGKTT--SILALAHELLGPNYKEA----------------- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 90 VIEIDAASNNGVDEIRN-----IRDKVKYAPSesKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPP 164
Cdd:PLN03025 67 VLELNASDDRGIDVVRNkikmfAQKKVTLPPG--RHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIE 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 165 TIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMdQAIAFGDGTLTLQDALNVTGSV 244
Cdd:PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNL-QATHSGFGFVNQENVFKVCDQP 223
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|
gi 686156298 245 HDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVRDTIM 294
Cdd:PLN03025 224 HPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNYDM 273
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
39-223 |
7.46e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 105.56 E-value: 7.46e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 39 HAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSD--VIEIDAASNN-GVDEIRNIRDKVKYAP 115
Cdd:PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDnfVLEPEEADKTiKVDQVRELVSFVVQTA 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 116 SESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVERLkfvadAQA 195
Cdd:PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWL-----QQA 177
|
170 180
....*....|....*....|....*....
gi 686156298 196 L-EYEEDALAFIAKASEGGMRDALSIMDQ 223
Cdd:PRK05707 178 LpESDERERIELLTLAGGSPLRALQLHEQ 206
|
|
| HLD_clamp_pol_III_gamma_tau |
cd18137 |
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit ... |
178-242 |
3.06e-24 |
|
helical lid domain of DNA polymerase III subunits gamma and tau; DNA polymerase III subunit gamma/tau is part of the DNA polymerase III holoenzyme. Gamma and tau subunits are isoforms, both containing the helical lid domain. Gamma interacts with the delta subunit to transfer the beta subunit on the DNA while tau serves as a scaffold to help in the dimerization of the core complex. Both are members of the clamp-loader clade of the AAA+ superfamily.
Pssm-ID: 350839 [Multi-domain] Cd Length: 65 Bit Score: 95.65 E-value: 3.06e-24
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 686156298 178 ISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALNVTG 242
Cdd:cd18137 1 ISVEDIVGRLAHILEKEGIEIEDEALELIARAAEGSMRDALSLLDQAIAFGGGRVTLDDVREMLG 65
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
34-218 |
4.07e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 100.61 E-value: 4.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 34 KEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSN-DGEPCNECAICKGITQGTNSD-------VIEIDAASNNG----- 100
Cdd:PRK06964 17 RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQpDGEPCGTCAACNWFAQGNHPDyrivrpeALAAEAPGAADeakea 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 101 -----------------VDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIP 163
Cdd:PRK06964 97 dadeggkktkapskeikIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLL 176
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 686156298 164 PTIISRAQRFDFKAISLDQIVERLKF--VADAQALEYEEDA--LAFIAkASEGGMRDAL 218
Cdd:PRK06964 177 PTILSRCRQFPMTVPAPEAAAAWLAAqgVADADALLAEAGGapLAALA-LASDENRPLR 234
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
35-234 |
2.11e-22 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 98.40 E-value: 2.11e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 35 EKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDG-EPCNECAICKGITQGTNSDVIEIDAASN---NG-------VDE 103
Cdd:PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGhKPCGECMSCHLFGQGSHPDFYEITPLSDepeNGrkllqikIDA 97
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 104 IRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQI 183
Cdd:PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEA 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 184 VERLKF--VADAqaleyeEDALAFIAKA----SEGGMR-------------DALSIMDQAIAFGDGTLTL 234
Cdd:PRK08699 178 LAYLRErgVAEP------EERLAFHSGAplfdEEPELRalriklldilaepRLLKILDYAALFDKEKLPL 241
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
12-274 |
1.42e-21 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 96.26 E-value: 1.42e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 12 PQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAkvFAKAINCLNSND--------GEPCNECAICKGIT 83
Cdd:PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLA--FHLANHILSHPDpaeapetlADPDPASPVWRQIA 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 QGTNSDVIEID---------AASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFIL 154
Cdd:PRK09112 97 QGAHPNLLHITrpfdektgkFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFIL 176
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 155 ATTEPHKIPPTIISRAQRFDFKAISLDQIVERLKFVADAQALeyEEDALAFIAKASEGGMRDALSIMDQaiafgdGTLTL 234
Cdd:PRK09112 177 ISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQGS--DGEITEALLQRSKGSVRKALLLLNY------GGLEI 248
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 686156298 235 QDALN--VTGSVHDEALNHLFEDIVQGdvQSSFKKYHQFIAE 274
Cdd:PRK09112 249 IATIDqlLAGSGPDARKAHKLADALSG--RESEVQFDFFRDH 288
|
|
| PRK04195 |
PRK04195 |
replication factor C large subunit; Provisional |
10-242 |
1.74e-21 |
|
replication factor C large subunit; Provisional
Pssm-ID: 235250 [Multi-domain] Cd Length: 482 Bit Score: 97.68 E-value: 1.74e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 10 YRPQSFDDVVGQEHVTKTLR---NAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINclnsndgepcnecaickgitqgt 86
Cdd:PRK04195 8 YRPKTLSDVVGNEKAKEQLRewiESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----------------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 87 nSDVIEIDAASNNGVDEIRNIrdkVKYAPSES-----KYKVYIIDEVHMLT----TGAFNALLKTLEEPpAHAIfILATT 157
Cdd:PRK04195 65 -WEVIELNASDQRTADVIERV---AGEAATSGslfgaRRKLILLDEVDGIHgnedRGGARAILELIKKA-KQPI-ILTAN 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 158 EPHKIPP-TIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDAlsIMD-QAIAFGDGTLTLQ 235
Cdd:PRK04195 139 DPYDPSLrELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSA--INDlQAIAEGYGKLTLE 216
|
....*..
gi 686156298 236 DALNVTG 242
Cdd:PRK04195 217 DVKTLGR 223
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
31-171 |
6.98e-20 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 90.95 E-value: 6.98e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 31 AISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSDVIEIDAASNN--GVDEIRNIR 108
Cdd:PRK06871 17 AFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKdiGVDQVREIN 96
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 686156298 109 DKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQ 171
Cdd:PRK06871 97 EKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
17-238 |
2.95e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 89.70 E-value: 2.95e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 17 DVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAI--NCLNSNDGEPCN--------ECAICKGITQGT 86
Cdd:PRK07471 20 ALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLlaTPPPGGDGAVPPptslaidpDHPVARRIAAGA 99
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 87 NSDVIEIDAASNNG---------VDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATT 157
Cdd:PRK07471 100 HGGLLTLERSWNEKgkrlrtvitVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSH 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 158 EPHKIPPTIISRAQRFDFKAISLDQIVErlkfVADAQALEYEEDALAFIAKASEGGMRDALSIMDqaiafGDGtLTLQDA 237
Cdd:PRK07471 180 APARLLPTIRSRCRKLRLRPLAPEDVID----ALAAAGPDLPDDPRAALAALAEGSVGRALRLAG-----GDG-LALYRR 249
|
.
gi 686156298 238 L 238
Cdd:PRK07471 250 L 250
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
32-176 |
1.00e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 83.91 E-value: 1.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 32 ISKEKQSHAYIFSGprGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSDVIEIdaASNNGVDEIRNIRDKV 111
Cdd:PRK07276 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVI--EPQGQVIKTDTIRELV 93
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 686156298 112 K-YAPS--ESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFK 176
Cdd:PRK07276 94 KnFSQSgyEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFP 161
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
28-188 |
4.43e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 82.54 E-value: 4.43e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 28 LRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSNDgEPCNECAICKGITQGTNSD--VIEIDAASNN-GVDEI 104
Cdd:PRK06090 15 WKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQS-EACGFCHSCELMQSGNHPDlhVIKPEKEGKSiTVEQI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 105 RNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIV 184
Cdd:PRK06090 94 RQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAM 173
|
....
gi 686156298 185 ERLK 188
Cdd:PRK06090 174 QWLK 177
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
1-347 |
5.52e-17 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 81.96 E-value: 5.52e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 1 MNYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFakainclnsndgepCNEcaick 80
Cdd:PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKAL--------------CNE----- 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 81 gitqgTNSDVIEIDAASNNgVDEIRNirDKVKYAPSES---KYKVYIIDEVHMLTTGAFNALLKTL-EEPPAHAIFILAT 156
Cdd:PHA02544 67 -----VGAEVLFVNGSDCR-IDFVRN--RLTRFASTVSltgGGKVIIIDEFDRLGLADAQRHLRSFmEAYSKNCSFIITA 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 157 TEPHKIPPTIISRAQRFDF------KAISL-DQIVERLKFVADAQALEYEEDALAFIAKASeggmrdalsimdqaiaFGD 229
Cdd:PHA02544 139 NNKNGIIEPLRSRCRVIDFgvptkeEQIEMmKQMIVRCKGILEAEGVEVDMKVLAALVKKN----------------FPD 202
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 230 --GTLTLQDALNVTGSVHDEALNHLFEDIVqGDVQSSFKkyhqfiaeGKEVNRlindmiyfVRDTIMNKTADKDSDYRAL 307
Cdd:PHA02544 203 frRTINELQRYASTGKIDAGILSEVTNSDI-DDVVEALK--------AKDFKA--------VRALAPNYANDYASFVGKL 265
|
330 340 350 360
....*....|....*....|....*....|....*....|....*
gi 686156298 308 MN-----LDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
Cdd:PHA02544 266 YDelypqVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLM 310
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
105-170 |
2.20e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 79.84 E-value: 2.20e-16
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 686156298 105 RNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRA 170
Cdd:PRK05917 81 RAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS 146
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
91-229 |
3.10e-14 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 76.03 E-value: 3.10e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 91 IEIDAASNNGVDEIRN-IRDKVKYAP-SESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIIS 168
Cdd:PRK04132 600 LELNASDERGINVIREkVKEFARTKPiGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 679
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 686156298 169 RAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGD 229
Cdd:PRK04132 680 RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDD 740
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
26-224 |
3.45e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 73.22 E-value: 3.45e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 26 KTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFakaINCLNSNDGEPCNECAICKGITQgtnSDVIEIDAASNNGVDEIR 105
Cdd:PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYF---LNKFNNLQITNLNEQELPANIIL---FDIFDKDLSKSEFLSAIN 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 106 NIrdkVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISLDQIVE 185
Cdd:PRK07132 80 KL---YFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILA 156
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 686156298 186 rlKFVADAQALEYE----------EDALAFIAKASEGGMRDALSIMDQA 224
Cdd:PRK07132 157 --KLLSKNKEKEYNwfyayifsnfEQAEKYINKESENLLKKFEEALNKS 203
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
31-176 |
1.18e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 71.91 E-value: 1.18e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 31 AISKEKQSHAYIFSGPRGTGKTSIAkvFAKAINCLNSNDgEPCNECAICKGITQGTNSDVIEIDAASNNGVD-------- 102
Cdd:PRK08769 19 ALDAGRLGHGLLICGPEGLGKRAVA--LALAEHVLASGP-DPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDklrteivi 95
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 686156298 103 -EIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFK 176
Cdd:PRK08769 96 eQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFK 170
|
|
| AAA |
cd00009 |
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily ... |
19-169 |
1.64e-13 |
|
The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Pssm-ID: 99707 [Multi-domain] Cd Length: 151 Bit Score: 68.33 E-value: 1.64e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 19 VGQEHVTKTLRNAISKEKQSHaYIFSGPRGTGKTSIAKVFAKAINclnsndgepcnecaickgitqGTNSDVIEIDAASN 98
Cdd:cd00009 1 VGQEEAIEALREALELPPPKN-LLLYGPPGTGKTTLARAIANELF---------------------RPGAPFLYLNASDL 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 99 NGVDEIRNIRDKVKY-----APSESKYKVYIIDEVHMLTTGAFNALLKTLEE------PPAHAIFILATT--EPHKIPPT 165
Cdd:cd00009 59 LEGLVVAELFGHFLVrllfeLAEKAKPGVLFIDEIDSLSRGAQNALLRVLETlndlriDRENVRVIGATNrpLLGDLDRA 138
|
....
gi 686156298 166 IISR 169
Cdd:cd00009 139 LYDR 142
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
39-169 |
2.06e-13 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 71.64 E-value: 2.06e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 39 HAYIFSGPRGTGKTSIAKVFAKAINCLNSNDGEPCNECAICKGITQGTNSD--VIEIDAASNN-GVDEIRNIRDKVKYAP 115
Cdd:PRK07993 25 HALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDyyTLTPEKGKSSlGVDAVREVTEKLYEHA 104
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 686156298 116 SESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR 169
Cdd:PRK07993 105 RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR 158
|
|
| PRK13341 |
PRK13341 |
AAA family ATPase; |
8-225 |
5.17e-13 |
|
AAA family ATPase;
Pssm-ID: 237354 [Multi-domain] Cd Length: 725 Bit Score: 72.01 E-value: 5.17e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 8 RMyRPQSFDDVVGQEHVT---KTLRNAISKEKQSHAyIFSGPRGTGKTSIAKVFAKAinclnsndgepcnecaickgitq 84
Cdd:PRK13341 21 RL-RPRTLEEFVGQDHILgegRLLRRAIKADRVGSL-ILYGPPGVGKTTLARIIANH----------------------- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 85 gTNSDVIEIDAASNnGVDEIRNirdKVKYAPSESKY----KVYIIDEVHMLTTGAFNALLKTLEEppAHAIFILATTE-P 159
Cdd:PRK13341 76 -TRAHFSSLNAVLA-GVKDLRA---EVDRAKERLERhgkrTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATTEnP 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 686156298 160 H-KIPPTIISRAQRFDFKAIS---LDQIVERLkfVADAQ------ALEYEEDALAFIAKASEGGMRDALSIMDQAI 225
Cdd:PRK13341 149 YfEVNKALVSRSRLFRLKSLSdedLHQLLKRA--LQDKErgygdrKVDLEPEAEKHLVDVANGDARSLLNALELAV 222
|
|
| AAA |
pfam00004 |
ATPase family associated with various cellular activities (AAA); AAA family proteins often ... |
41-173 |
4.28e-12 |
|
ATPase family associated with various cellular activities (AAA); AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes.
Pssm-ID: 459627 [Multi-domain] Cd Length: 130 Bit Score: 63.38 E-value: 4.28e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 41 YIFSGPRGTGKTSIAKVFAKAinclnsndgepcnecaickgitqgTNSDVIEIDAAS--NNGVDE-IRNIRDKVKYAPSE 117
Cdd:pfam00004 1 LLLYGPPGTGKTTLAKAVAKE------------------------LGAPFIEISGSElvSKYVGEsEKRLRELFEAAKKL 56
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 118 SKyKVYIIDEVHMLTT-----------GAFNALLKTLEEPPAHA---IFILATTEPHKIPPTIISRAQRF 173
Cdd:pfam00004 57 AP-CVIFIDEIDALAGsrgsggdsesrRVVNQLLTELDGFTSSNskvIVIAATNRPDKLDPALLGRFDRI 125
|
|
| SpoVK |
COG0464 |
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle ... |
8-236 |
9.53e-12 |
|
AAA+-type ATPase, SpoVK/Ycf46/Vps4 family [Cell wall/membrane/envelope biogenesis, Cell cycle control, cell division, chromosome partitioning, Signal transduction mechanisms];
Pssm-ID: 440232 [Multi-domain] Cd Length: 397 Bit Score: 66.86 E-value: 9.53e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 8 RMYRPQSFDDVVGQEHVTKTLRNAIS------------KEKQSHAYIFSGPRGTGKTSIAKVFAKAINclnsndgepcne 75
Cdd:COG0464 149 LELREAILDDLGGLEEVKEELRELVAlplkrpelreeyGLPPPRGLLLYGPPGTGKTLLARALAGELG------------ 216
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 76 caickgitqgtnSDVIEIDAAsnngvdEI---------RNIRDKVKYAPSESKYkVYIIDEVHMLTTG-----------A 135
Cdd:COG0464 217 ------------LPLIEVDLS------DLvskyvgeteKNLREVFDKARGLAPC-VLFIDEADALAGKrgevgdgvgrrV 277
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 136 FNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQR-FDFKAISLDQIVERLKFVADAQALEYEEDaLAFIAKASEGG- 213
Cdd:COG0464 278 VNTLLTEMEELRSDVVVIAATNRPDLLDPALLRRFDEiIFFPLPDAEERLEIFRIHLRKRPLDEDVD-LEELAEATEGLs 356
|
250 260
....*....|....*....|....*..
gi 686156298 214 ---MRDAL-SIMDQAIAFGDGTLTLQD 236
Cdd:COG0464 357 gadIRNVVrRAALQALRLGREPVTTED 383
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
58-201 |
3.64e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 63.70 E-value: 3.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 58 FAKAINCLNSNdgEPCNECAICKGITQGTNSDVIEI-DAASNNGVDEIRNIRDKVKYaPSESKY--KVYIIDEVHMLTTG 134
Cdd:PRK05818 27 YLTSIVCTKAN--GFCKTCESCLKILNGKYNDFYLIfDQKNPIKKEDALSIINKLNR-PSVESNgkKIYIIYGIEKLNKQ 103
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 686156298 135 AFNALLKTLEEPPAHAIFILATTEPHKIPPTIISR---------AQRFDFKAISLDQIVERLK---FVADAQaLEYEED 201
Cdd:PRK05818 104 SANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRcvqyvvlskEKKVPFKVESNDRYFQYILlsfYSVDEQ-LQAYNN 181
|
|
| ruvB |
PRK00080 |
Holliday junction branch migration DNA helicase RuvB; |
11-252 |
3.02e-10 |
|
Holliday junction branch migration DNA helicase RuvB;
Pssm-ID: 234619 [Multi-domain] Cd Length: 328 Bit Score: 61.69 E-value: 3.02e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 11 RPQSFDDVVGQEHVTKTLRNAIS-----KEKQSHAyIFSGPRGTGKTSIAKVFAkaiNCLNSNdgepcnecaiCKgITQG 85
Cdd:PRK00080 20 RPKSLDEFIGQEKVKENLKIFIEaakkrGEALDHV-LLYGPPGLGKTTLANIIA---NEMGVN----------IR-ITSG 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 86 TnsdVIE--ID-AASNNGVDEirniRDkvkyapseskykVYIIDEVHmlttgafnALLKTLEE----------------- 145
Cdd:PRK00080 85 P---ALEkpGDlAAILTNLEE----GD------------VLFIDEIH--------RLSPVVEEilypamedfrldimigk 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 146 -PPAHAI------FIL--ATTEPHKIPPTIISR---AQRFDF-KAISLDQIVERLkfvADAQALEYEEDALAFIAKASEG 212
Cdd:PRK00080 138 gPAARSIrldlppFTLigATTRAGLLTSPLRDRfgiVQRLEFyTVEELEKIVKRS---ARILGVEIDEEGALEIARRSRG 214
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 686156298 213 GMRDALS----IMDQAIAFGDGTLTLQDAlnvtgsvhDEALNHL 252
Cdd:PRK00080 215 TPRIANRllrrVRDFAQVKGDGVITKEIA--------DKALDML 250
|
|
| HolA |
COG1466 |
DNA polymerase III, delta subunit [Replication, recombination and repair]; |
118-290 |
6.07e-10 |
|
DNA polymerase III, delta subunit [Replication, recombination and repair];
Pssm-ID: 441075 [Multi-domain] Cd Length: 305 Bit Score: 60.65 E-value: 6.07e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 118 SKYKVYIIDEVHMLTTG--AFNALLKTLEEPPAHAIFILATTEP---HKIPPTIISRAQRFDFKAISLDQIVERLKFVAD 192
Cdd:COG1466 61 GERRLVIVRNAEFLKKPgeGLEALEAYLANPPPDTVLVLTAGKLdkrKKLFKALEKAGVVVECYPLKERELPAWIRQRLK 140
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 193 AQALEYEEDALAFIAKASEGGMRDALSIMDQ--AIAFGDGTLTLQDALNVTGSVHDEALNHLFEDIVQGDVQSSFKKYHQ 270
Cdd:COG1466 141 AAGLRIDPDAAQLLAERVGGDLLALAQELEKlaLYAGDGGTITLEDVEALVGDSAEFNVFDLADALLAGDAARALRILRR 220
|
170 180
....*....|....*....|
gi 686156298 271 FIAEGKEVNRLINDMIYFVR 290
Cdd:COG1466 221 LLAEGEEPVLILAALARQFR 240
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
15-212 |
2.13e-09 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 58.36 E-value: 2.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 15 FDDVVGQEHVTKTLRNAISKEKQ-----------SHAYIFSGPRGTGKTSIAKVFAKAinclnsndgepcnecaickgit 83
Cdd:COG1223 1 LDDVVGQEEAKKKLKLIIKELRRrenlrkfglwpPRKILFYGPPGTGKTMLAEALAGE---------------------- 58
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 84 qgTNSDVIEI-----------DAASNngvdeIRNIRDKVKYAPSeskykVYIIDEVHMLT--------TG----AFNALL 140
Cdd:COG1223 59 --LKLPLLTVrldsligsylgETARN-----LRKLFDFARRAPC-----VIFFDEFDAIAkdrgdqndVGevkrVVNALL 126
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 686156298 141 KTLEEPPAHAIFILATTEPHKIPPTIISraqRFD----FKAISLDQIVERLKFVADAQALEYEEDALAfIAKASEG 212
Cdd:COG1223 127 QELDGLPSGSVVIAATNHPELLDSALWR---RFDevieFPLPDKEERKEILELNLKKFPLPFELDLKK-LAKKLEG 198
|
|
| HLD_clamp_RFC |
cd18140 |
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein ... |
178-241 |
8.11e-09 |
|
helical lid domain of replication factor C subunit; Replication factor C (RFC) is five-protein clamp loader complex that forms a stable ATP-dependent complex with the sliding clamp, PCNA, which binds specifically to primed DNA. RFC subunits belong to the clamp loader clade of the AAA+ superfamily.
Pssm-ID: 350842 [Multi-domain] Cd Length: 63 Bit Score: 52.15 E-value: 8.11e-09
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 686156298 178 ISLDQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMdQAIAFGDGTLTLQDALNVT 241
Cdd:cd18140 1 LSKEQIVKRLREICKKEGVKIDEEALEAIAEKSEGDMRKAINDL-QAAAAGGGVITEEDVYEVA 63
|
|
| RecA-like_protease |
cd19481 |
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of ... |
26-176 |
2.86e-07 |
|
proteases similar to RecA; RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Pssm-ID: 410889 [Multi-domain] Cd Length: 158 Bit Score: 50.36 E-value: 2.86e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 26 KTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAkainclnsndGEpcnecaickgitqgTNSDVIEIDAASNNGV---D 102
Cdd:cd19481 14 RGSRLRRYGLGLPKGILLYGPPGTGKTLLAKALA----------GE--------------LGLPLIVVKLSSLLSKyvgE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 103 EIRNIRDKVKYApSESKYKVYIIDEVHML------------TTGAFNALLKTLEEPPA--HAIFILATTEPHKIPPTIIs 168
Cdd:cd19481 70 SEKNLRKIFERA-RRLAPCILFIDEIDAIgrkrdssgesgeLRRVLNQLLTELDGVNSrsKVLVIAATNRPDLLDPALL- 147
|
....*...
gi 686156298 169 RAQRFDFK 176
Cdd:cd19481 148 RPGRFDEV 155
|
|
| AAA |
smart00382 |
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
41-176 |
6.17e-07 |
|
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 49.29 E-value: 6.17e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 41 YIFSGPRGTGKTSIAKVFAKAINCLNSN----DGEPcnecaICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYaps 116
Cdd:smart00382 5 ILIVGPPGSGKTTLARALARELGPPGGGviyiDGED-----ILEEVLDQLLLIIVGGKKASGSGELRLRLALALARK--- 76
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 686156298 117 eSKYKVYIIDEVHMLTTGAFNALL--------KTLEEPPAHAIFILATTEPHKIPPTIISRaqRFDFK 176
Cdd:smart00382 77 -LKPDVLILDEITSLLDAEQEALLllleelrlLLLLKSEKNLTVILTTNDEKDLGPALLRR--RFDRR 141
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
116-176 |
1.26e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 49.26 E-value: 1.26e-06
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 686156298 116 SESKYKVYIIdEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFK 176
Cdd:PRK08485 52 AESEEKIIVI-AAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111
|
|
| RuvB_N |
pfam05496 |
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the ... |
11-60 |
1.42e-06 |
|
Holliday junction DNA helicase RuvB P-loop domain; The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein.
Pssm-ID: 398900 [Multi-domain] Cd Length: 159 Bit Score: 48.27 E-value: 1.42e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*
gi 686156298 11 RPQSFDDVVGQEHVTKTLRNAISKEKQ-----SHAyIFSGPRGTGKTSIAKVFAK 60
Cdd:pfam05496 2 RPRTLDEYIGQEKVKENLKIFIEAAKQrgealDHV-LLYGPPGLGKTTLANIIAN 55
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
10-59 |
3.41e-06 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 50.22 E-value: 3.41e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 686156298 10 YRPQSFDDVVGQEHVTKTLRNAISKEKQSHaYIFSGPRGTGK--TSIAKVFA 59
Cdd:PRK04132 13 YRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKclTGDTKVIA 63
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
96-198 |
4.97e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 48.30 E-value: 4.97e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 96 ASNNGVDEIRNIRDKVKYAPSESKYKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDF 175
Cdd:PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINV 145
|
90 100
....*....|....*....|....*..
gi 686156298 176 KAISL----DQIVERLKFVADAQALEY 198
Cdd:PRK06581 146 RSSILhaynELYSQFIQPIADNKTLDF 172
|
|
| RuvB |
COG2255 |
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, ... |
11-252 |
5.43e-06 |
|
Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair];
Pssm-ID: 441856 [Multi-domain] Cd Length: 337 Bit Score: 48.54 E-value: 5.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 11 RPQSFDDVVGQEHVTKTLRNAISKEKQ-----SHAyIFSGPRGTGKTSIAKVFAkaiNCLNSNdgepcnecaiCKgITQG 85
Cdd:COG2255 23 RPKRLDEYIGQEKVKENLKIFIEAAKKrgealDHV-LLYGPPGLGKTTLAHIIA---NEMGVN----------IR-ITSG 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 86 TnsdVIEI--D-AA--SNngVDEirniRDkvkyapseskykVYIIDEVHMLTtgafnallKTLEE--------------- 145
Cdd:COG2255 88 P---AIEKpgDlAAilTN--LEE----GD------------VLFIDEIHRLS--------RVVEEilypamedfrldivi 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 146 ---PPAHAI------FIL--ATTEPHKIPPTIISR---AQRFDF-KAISLDQIVERlkfVADAQALEYEEDALAFIAKAS 210
Cdd:COG2255 139 gkgPAARSIrldlppFTLvgATTRAGLLTSPLRDRfgiVLRLEFyTVEELAEIVKR---SARILGVEIDEEGALEIARRS 215
|
250 260 270 280
....*....|....*....|....*....|....*....|....*.
gi 686156298 211 EGGMRDALSIM----DQAIAFGDGTLTLQDAlnvtgsvhDEALNHL 252
Cdd:COG2255 216 RGTPRIANRLLrrvrDFAQVKGDGVITLEIA--------DAALELL 253
|
|
| HLD_clamp |
cd18133 |
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit ... |
181-230 |
1.24e-05 |
|
helical lid domain of clamp loader-like AAA+ proteins; Clamp loader complexes are multisubunit complexes that play an important role in DNA replication. They open sliding clamps for assembly and close them around DNA, specifically targeting them to sites where DNA synthesis is initiated and orienting them correctly for replication. The subunits belong to the clamp loader clade of AAA+ superfamily.
Pssm-ID: 350838 [Multi-domain] Cd Length: 65 Bit Score: 43.23 E-value: 1.24e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 686156298 181 DQIVERLKFVADAQALEYEEDALAFIAKASEGGMRDALSIMDQAIAFGDG 230
Cdd:cd18133 4 EQLKRRLAAIAEQEKLKLDDAALQALAYISEGDLRKALNALQRAAALGDD 53
|
|
| RPT1 |
COG1222 |
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
14-174 |
4.25e-04 |
|
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 42.69 E-value: 4.25e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 14 SFDDVVGQEHVTKTLRNAISKE-KQSHAY-----------IFSGPRGTGKTSIAKVFAkainclnsndgepcNEcaickg 81
Cdd:COG1222 76 TFDDIGGLDEQIEEIREAVELPlKNPELFrkygieppkgvLLYGPPGTGKTLLAKAVA--------------GE------ 135
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 82 itqgTNSDVIEIDAasnngvDEI---------RNIRDKVKYApSESKYKVYIIDEV--------HMLTTGA----FNALL 140
Cdd:COG1222 136 ----LGAPFIRVRG------SELvskyigegaRNVREVFELA-REKAPSIIFIDEIdaiaarrtDDGTSGEvqrtVNQLL 204
|
170 180 190
....*....|....*....|....*....|....*.
gi 686156298 141 KTLEE-PPAHAIFILATTE-PHKIPPTIIsRAQRFD 174
Cdd:COG1222 205 AELDGfESRGDVLIIAATNrPDLLDPALL-RPGRFD 239
|
|
| TIP49 |
COG1224 |
DNA helicase TIP49, TBP-interacting protein [Transcription]; |
102-224 |
4.26e-04 |
|
DNA helicase TIP49, TBP-interacting protein [Transcription];
Pssm-ID: 440837 [Multi-domain] Cd Length: 452 Bit Score: 43.04 E-value: 4.26e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 102 DEIRNIRDK-VKYAPSESKYK----VYIIDEVHMLTTGAFNALLKTLEEPPAhAIFILAT---------TE---PHKIPP 164
Cdd:COG1224 270 SEVRKQVDElVKKWIEEGKAElvpgVLFIDDAHMLDIEAFSFLTRAMESELA-PIIILATnrgitkirgTDiesPHGIPL 348
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 686156298 165 TIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAK-ASEGGMRDALSIMDQA 224
Cdd:COG1224 349 DLLDRLLIIPTRPYTEDEIREIIKIRAEEEDIELSDDALEELTKiGVERSLRYAVQLLEPA 409
|
|
| holA |
TIGR01128 |
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) ... |
137-347 |
8.24e-04 |
|
DNA polymerase III, delta subunit; DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273455 [Multi-domain] Cd Length: 302 Bit Score: 41.48 E-value: 8.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 137 NALLKTLEEPPAHAIFILATTEP---HKI--PPTIISRAQRFDFKAISLDQIVERLKFVADAQALEYEEDALAFIAKASE 211
Cdd:TIGR01128 65 KALEEYLANPPPDTLLLIEAPKLdkrKKLtkWLKALKNAEIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVE 144
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 686156298 212 GGMRDALSIMDQAIAF-GDGTLTLQDALNVTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFIAEGKEVNRLINDMIYFVR 290
Cdd:TIGR01128 145 GNLLAIAQELEKLALYaPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLR 224
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 686156298 291 ---------DTIMNKTADKDS----DYR------ALMNLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEV--LLVKLA 347
Cdd:TIGR01128 225 lllqlkrlaQQGGPLAQLASKlgiwPYRrklalkALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALerLLLKLA 302
|
|
| TIP49 |
pfam06068 |
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and ... |
122-170 |
2.91e-03 |
|
TIP49 P-loop domain; This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases.
Pssm-ID: 399217 [Multi-domain] Cd Length: 347 Bit Score: 39.99 E-value: 2.91e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 686156298 122 VYIIDEVHMLTTGAFNALLKTLEEPPAhAIFILATT------------EPHKIPPTIISRA 170
Cdd:pfam06068 277 VLFIDEVHMLDIECFSFLNRALESDLA-PIVILATNrgictirgtdiiSPHGIPLDLLDRL 336
|
|
| AAA_16 |
pfam13191 |
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
18-63 |
5.64e-03 |
|
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily.
Pssm-ID: 433025 [Multi-domain] Cd Length: 167 Bit Score: 37.87 E-value: 5.64e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*...
gi 686156298 18 VVGQEHVTKTLRNAISK--EKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Cdd:pfam13191 2 LVGREEELEQLLDALDRvrSGRPPSVLLTGEAGTGKTTLLRELLRALE 49
|
|
| |
