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Conserved domains on  [gi|686348772|ref|WP_031887730|]
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exotoxin OB-fold domain-containing protein, partial [Staphylococcus aureus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Stap_Strp_toxin super family cl39069
Staphylococcal/Streptococcal toxin, OB-fold domain; This entry represents an OB-fold domain ...
 49-119 5.84e-12

Staphylococcal/Streptococcal toxin, OB-fold domain; This entry represents an OB-fold domain found in enterotoxins.


The actual alignment was detected with superfamily member pfam01123:

Pssm-ID: 426064  Cd Length: 86  Bit Score: 57.03  E-value: 5.84e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 686348772   49 NVMNLYTSPPVEGRGVINSRQFLSHDLIFPIEYKS---YNEVKTELENTELANNYKDKKVDIFGVPYFYTCIIP 119
Cdd:pfam01123   1 NLKYLYTNDPIKKENKKSVDQLLGHTLIFNTQFKThvwYNDLSSEFESKAIAKKFKDKEVDIYGLNYSYNCYCK 74
 
Name Accession Description Interval E-value
Stap_Strp_toxin pfam01123
Staphylococcal/Streptococcal toxin, OB-fold domain; This entry represents an OB-fold domain ...
 49-119 5.84e-12

Staphylococcal/Streptococcal toxin, OB-fold domain; This entry represents an OB-fold domain found in enterotoxins.


Pssm-ID: 426064  Cd Length: 86  Bit Score: 57.03  E-value: 5.84e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 686348772   49 NVMNLYTSPPVEGRGVINSRQFLSHDLIFPIEYKS---YNEVKTELENTELANNYKDKKVDIFGVPYFYTCIIP 119
Cdd:pfam01123   1 NLKYLYTNDPIKKENKKSVDQLLGHTLIFNTQFKThvwYNDLSSEFESKAIAKKFKDKEVDIYGLNYSYNCYCK 74
 
Name Accession Description Interval E-value
Stap_Strp_toxin pfam01123
Staphylococcal/Streptococcal toxin, OB-fold domain; This entry represents an OB-fold domain ...
 49-119 5.84e-12

Staphylococcal/Streptococcal toxin, OB-fold domain; This entry represents an OB-fold domain found in enterotoxins.


Pssm-ID: 426064  Cd Length: 86  Bit Score: 57.03  E-value: 5.84e-12
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 686348772   49 NVMNLYTSPPVEGRGVINSRQFLSHDLIFPIEYKS---YNEVKTELENTELANNYKDKKVDIFGVPYFYTCIIP 119
Cdd:pfam01123   1 NLKYLYTNDPIKKENKKSVDQLLGHTLIFNTQFKThvwYNDLSSEFESKAIAKKFKDKEVDIYGLNYSYNCYCK 74
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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