MULTISPECIES: AAA family ATPase [Acinetobacter calcoaceticus/baumannii complex]
Protein Classification
COG3910 family protein( domain architecture ID 11467603)
COG3910 family protein
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| COG3910 | COG3910 | Predicted ATPase [General function prediction only]; |
5-236 | 9.71e-126 | ||||
Predicted ATPase [General function prediction only]; : Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 356.00 E-value: 9.71e-126
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| Name | Accession | Description | Interval | E-value | ||||
| COG3910 | COG3910 | Predicted ATPase [General function prediction only]; |
5-236 | 9.71e-126 | ||||
Predicted ATPase [General function prediction only]; Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 356.00 E-value: 9.71e-126
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| ABC_Class2 | cd03227 | ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
38-201 | 3.45e-11 | ||||
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 59.68 E-value: 3.45e-11
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| AAA_23 | pfam13476 | AAA domain; |
34-96 | 2.74e-09 | ||||
AAA domain; Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 55.19 E-value: 2.74e-09
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| recF | PRK00064 | recombination protein F; Reviewed |
35-65 | 6.94e-07 | ||||
recombination protein F; Reviewed Pssm-ID: 234608 [Multi-domain] Cd Length: 361 Bit Score: 49.39 E-value: 6.94e-07
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| recf | TIGR00611 | recF protein; All proteins in this family for which functions are known are DNA binding ... |
36-67 | 7.17e-06 | ||||
recF protein; All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 273173 [Multi-domain] Cd Length: 365 Bit Score: 46.19 E-value: 7.17e-06
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| AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
39-191 | 7.02e-05 | ||||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.98 E-value: 7.02e-05
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| AztA | NF040873 | zinc ABC transporter ATP-binding protein AztA; |
28-61 | 8.07e-03 | ||||
zinc ABC transporter ATP-binding protein AztA; Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 36.06 E-value: 8.07e-03
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| Name | Accession | Description | Interval | E-value | |||||
| COG3910 | COG3910 | Predicted ATPase [General function prediction only]; |
5-236 | 9.71e-126 | |||||
Predicted ATPase [General function prediction only]; Pssm-ID: 443116 [Multi-domain] Cd Length: 239 Bit Score: 356.00 E-value: 9.71e-126
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| YbjD | COG3593 | Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM ... |
30-230 | 2.83e-21 | |||||
Predicted ATP-dependent endonuclease of the OLD family, contains P-loop ATPase and TOPRIM domains [Replication, recombination and repair]; Pssm-ID: 442812 [Multi-domain] Cd Length: 359 Bit Score: 90.83 E-value: 2.83e-21
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| COG3950 | COG3950 | Predicted ATP-binding protein involved in virulence [General function prediction only]; |
32-208 | 3.66e-16 | |||||
Predicted ATP-binding protein involved in virulence [General function prediction only]; Pssm-ID: 443150 [Multi-domain] Cd Length: 276 Bit Score: 75.42 E-value: 3.66e-16
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| ABC_Class2 | cd03227 | ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems ... |
38-201 | 3.45e-11 | |||||
ATP-binding cassette domain of non-transporter proteins; ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Pssm-ID: 213194 [Multi-domain] Cd Length: 162 Bit Score: 59.68 E-value: 3.45e-11
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| ABC_ATPase | cd00267 | ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
22-206 | 1.90e-10 | |||||
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 57.64 E-value: 1.90e-10
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| ABC_SMC_barmotin | cd03278 | ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a ... |
36-189 | 1.05e-09 | |||||
ATP-binding cassette domain of barmotin, a member of the SMC protein family; Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Pssm-ID: 213245 [Multi-domain] Cd Length: 197 Bit Score: 56.32 E-value: 1.05e-09
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| AAA_23 | pfam13476 | AAA domain; |
34-96 | 2.74e-09 | |||||
AAA domain; Pssm-ID: 463890 [Multi-domain] Cd Length: 190 Bit Score: 55.19 E-value: 2.74e-09
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| ABC_SMC6_euk | cd03276 | ATP-binding cassette domain of eukaryotic SM6 proteins; The structural maintenance of ... |
36-65 | 1.75e-08 | |||||
ATP-binding cassette domain of eukaryotic SM6 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Pssm-ID: 213243 [Multi-domain] Cd Length: 198 Bit Score: 52.99 E-value: 1.75e-08
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| SbcC | COG0419 | DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; |
32-64 | 6.64e-08 | |||||
DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; Pssm-ID: 440188 [Multi-domain] Cd Length: 204 Bit Score: 51.16 E-value: 6.64e-08
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| AAA_21 | pfam13304 | AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
136-195 | 2.89e-07 | |||||
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system. Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 50.08 E-value: 2.89e-07
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| RecF | COG1195 | Recombinational DNA repair ATPase RecF [Replication, recombination and repair]; |
35-67 | 3.93e-07 | |||||
Recombinational DNA repair ATPase RecF [Replication, recombination and repair]; Pssm-ID: 440808 [Multi-domain] Cd Length: 352 Bit Score: 49.77 E-value: 3.93e-07
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| MK0520 | COG2401 | ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
35-202 | 4.00e-07 | |||||
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]; Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 49.19 E-value: 4.00e-07
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| ABC_Rad50 | cd03240 | ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
36-64 | 5.77e-07 | |||||
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 48.37 E-value: 5.77e-07
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| recF | PRK00064 | recombination protein F; Reviewed |
35-65 | 6.94e-07 | |||||
recombination protein F; Reviewed Pssm-ID: 234608 [Multi-domain] Cd Length: 361 Bit Score: 49.39 E-value: 6.94e-07
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| COG1106 | COG1106 | ATPase/GTPase, AAA15 family [General function prediction only]; |
42-194 | 2.97e-06 | |||||
ATPase/GTPase, AAA15 family [General function prediction only]; Pssm-ID: 440723 [Multi-domain] Cd Length: 330 Bit Score: 47.35 E-value: 2.97e-06
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| ABC_cobalt_CbiO_domain1 | cd03225 | First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
28-189 | 5.00e-06 | |||||
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 45.92 E-value: 5.00e-06
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| recf | TIGR00611 | recF protein; All proteins in this family for which functions are known are DNA binding ... |
36-67 | 7.17e-06 | |||||
recF protein; All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair] Pssm-ID: 273173 [Multi-domain] Cd Length: 365 Bit Score: 46.19 E-value: 7.17e-06
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| SMC_N | pfam02463 | RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The ... |
36-67 | 2.41e-05 | |||||
RecF/RecN/SMC N terminal domain; This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Pssm-ID: 426784 [Multi-domain] Cd Length: 1161 Bit Score: 44.96 E-value: 2.41e-05
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| ABC_RecF | cd03242 | ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that ... |
36-67 | 2.98e-05 | |||||
ATP-binding cassette domain of RecF; RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Pssm-ID: 213209 [Multi-domain] Cd Length: 270 Bit Score: 44.21 E-value: 2.98e-05
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| COG4637 | COG4637 | Predicted ATPase [General function prediction only]; |
33-75 | 3.09e-05 | |||||
Predicted ATPase [General function prediction only]; Pssm-ID: 443675 [Multi-domain] Cd Length: 371 Bit Score: 44.15 E-value: 3.09e-05
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| COG4913 | COG4913 | Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; |
31-64 | 5.11e-05 | |||||
Uncharacterized conserved protein, contains a C-terminal ATPase domain [Function unknown]; Pssm-ID: 443941 [Multi-domain] Cd Length: 1089 Bit Score: 44.14 E-value: 5.11e-05
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| AAA_15 | pfam13175 | AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the ... |
36-68 | 5.43e-05 | |||||
AAA ATPase domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Pssm-ID: 433011 [Multi-domain] Cd Length: 392 Bit Score: 43.74 E-value: 5.43e-05
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| AAA | smart00382 | ATPases associated with a variety of cellular activities; AAA - ATPases associated with a ... |
39-191 | 7.02e-05 | |||||
ATPases associated with a variety of cellular activities; AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Pssm-ID: 214640 [Multi-domain] Cd Length: 148 Bit Score: 41.98 E-value: 7.02e-05
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| ABC_RecN | cd03241 | ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC ... |
27-65 | 7.79e-05 | |||||
ATP-binding cassette domain of RecN; RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Pssm-ID: 213208 [Multi-domain] Cd Length: 276 Bit Score: 42.96 E-value: 7.79e-05
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| CcmA | COG4133 | ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
35-195 | 8.38e-05 | |||||
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 42.08 E-value: 8.38e-05
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| ABC_Iron-Siderophores_B12_Hemin | cd03214 | ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
33-191 | 9.64e-05 | |||||
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 41.65 E-value: 9.64e-05
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| ABC_SMC5_euk | cd03277 | ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of ... |
7-67 | 1.78e-04 | |||||
ATP-binding cassette domain of eukaryotic SMC5 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Pssm-ID: 213244 [Multi-domain] Cd Length: 213 Bit Score: 41.43 E-value: 1.78e-04
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| AAA_29 | pfam13555 | P-loop containing region of AAA domain; |
36-64 | 1.93e-04 | |||||
P-loop containing region of AAA domain; Pssm-ID: 433304 [Multi-domain] Cd Length: 61 Bit Score: 38.35 E-value: 1.93e-04
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| AAA_21 | pfam13304 | AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being ... |
42-74 | 4.57e-04 | |||||
AAA domain, putative AbiEii toxin, Type IV TA system; Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system. Pssm-ID: 433102 [Multi-domain] Cd Length: 303 Bit Score: 40.45 E-value: 4.57e-04
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| Smc | COG1196 | Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; ... |
36-65 | 5.89e-04 | |||||
Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Pssm-ID: 440809 [Multi-domain] Cd Length: 983 Bit Score: 40.69 E-value: 5.89e-04
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| ABCC_MRP_Like | cd03228 | ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
28-61 | 9.34e-04 | |||||
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 38.90 E-value: 9.34e-04
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| ABC_sbcCD | cd03279 | ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are ... |
36-114 | 9.49e-04 | |||||
ATP-binding cassette domain of sbcCD; SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Pssm-ID: 213246 [Multi-domain] Cd Length: 213 Bit Score: 39.17 E-value: 9.49e-04
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| SMC_prok_A | TIGR02169 | chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of ... |
36-73 | 1.14e-03 | |||||
chromosome segregation protein SMC, primarily archaeal type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274009 [Multi-domain] Cd Length: 1164 Bit Score: 40.05 E-value: 1.14e-03
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| PRK03918 | PRK03918 | DNA double-strand break repair ATPase Rad50; |
36-64 | 1.29e-03 | |||||
DNA double-strand break repair ATPase Rad50; Pssm-ID: 235175 [Multi-domain] Cd Length: 880 Bit Score: 39.66 E-value: 1.29e-03
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| ABC_subfamily_A | cd03263 | ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
28-61 | 2.23e-03 | |||||
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 38.25 E-value: 2.23e-03
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| NatA | COG4555 | ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
28-191 | 2.28e-03 | |||||
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism]; Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 38.30 E-value: 2.28e-03
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| SMC_prok_B | TIGR02168 | chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of ... |
36-65 | 2.29e-03 | |||||
chromosome segregation protein SMC, common bacterial type; SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins] Pssm-ID: 274008 [Multi-domain] Cd Length: 1179 Bit Score: 38.88 E-value: 2.29e-03
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| recF | PRK14079 | recombination protein F; Provisional |
38-65 | 2.70e-03 | |||||
recombination protein F; Provisional Pssm-ID: 184491 [Multi-domain] Cd Length: 349 Bit Score: 38.23 E-value: 2.70e-03
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| ABC_tran | pfam00005 | ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
42-61 | 4.01e-03 | |||||
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains. Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 36.86 E-value: 4.01e-03
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| PRK01156 | PRK01156 | chromosome segregation protein; Provisional |
36-68 | 5.19e-03 | |||||
chromosome segregation protein; Provisional Pssm-ID: 100796 [Multi-domain] Cd Length: 895 Bit Score: 37.96 E-value: 5.19e-03
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| 46 | PHA02562 | endonuclease subunit; Provisional |
43-64 | 7.05e-03 | |||||
endonuclease subunit; Provisional Pssm-ID: 222878 [Multi-domain] Cd Length: 562 Bit Score: 37.30 E-value: 7.05e-03
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| RecN | COG0497 | DNA repair ATPase RecN [Replication, recombination and repair]; |
30-65 | 7.16e-03 | |||||
DNA repair ATPase RecN [Replication, recombination and repair]; Pssm-ID: 440263 [Multi-domain] Cd Length: 555 Bit Score: 37.36 E-value: 7.16e-03
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| ABC_SMC4_euk | cd03274 | ATP-binding cassette domain of eukaryotic SMC4 proteins; The structural maintenance of ... |
38-66 | 7.31e-03 | |||||
ATP-binding cassette domain of eukaryotic SMC4 proteins; The structural maintenance of chromosomes (SMC) proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Pssm-ID: 213241 [Multi-domain] Cd Length: 212 Bit Score: 36.51 E-value: 7.31e-03
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| AztA | NF040873 | zinc ABC transporter ATP-binding protein AztA; |
28-61 | 8.07e-03 | |||||
zinc ABC transporter ATP-binding protein AztA; Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 36.06 E-value: 8.07e-03
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| YhaN | COG4717 | Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; |
35-60 | 9.36e-03 | |||||
Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; Pssm-ID: 443752 [Multi-domain] Cd Length: 641 Bit Score: 37.05 E-value: 9.36e-03
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| DppF | COG1124 | ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
27-61 | 9.97e-03 | |||||
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]; Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 36.32 E-value: 9.97e-03
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