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Conserved domains on  [gi|690974823|ref|WP_031949374|]
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MULTISPECIES: OmpA family protein [Acinetobacter calcoaceticus/baumannii complex]

Protein Classification

OmpA family protein( domain architecture ID 10163224)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0016020|GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 1.78e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 136.53  E-value: 1.78e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  54 RLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRG 133
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 690974823 134 STQPYVPNTTNENRAINRRVAIVV 157
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 1.78e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 136.53  E-value: 1.78e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  54 RLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRG 133
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 690974823 134 STQPYVPNTTNENRAINRRVAIVV 157
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-159 2.90e-40

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.22  E-value: 2.90e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  51 LPERLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVI 130
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264

                         90       100
                 ....*....|....*....|....*....
gi 690974823 131 GRGSTQPYVPNTTNENRAINRRVAIVVIP 159
Cdd:COG2885  265 GYGESRPVASNDTEEGRAKNRRVEIVVLK 293
PRK09967 PRK09967
OmpA family protein;
1-159 2.13e-27

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 100.05  E-value: 2.13e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823   1 MNTRYLklSFIALICITLAGCLS----FGPlkyRQVKLLKKEGFVLTDEGWTLGLPERLLFDFNNAELKQSHEAELVRLA 76
Cdd:PRK09967   1 MIKHLV--APLIFTSLILTGCQSpqgkFTP---EQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMA 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  77 SQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFlARG--FKKENIYVIGRGSTQPYVPNTTNENRAINRRVA 154
Cdd:PRK09967  76 AKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAW-AMGgqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVA 154


                 ....*
gi 690974823 155 IVVIP 159
Cdd:PRK09967 155 VVITT 159
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-150 5.32e-25

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 92.04  E-value: 5.32e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823   57 FDFNNAELKQSHEAELVRLASQLNKYDL-NKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRGST 135
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 690974823  136 QPYVPNTTNENRAIN 150
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 56-157 2.83e-22

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 86.20  E-value: 2.83e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823   56 LFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDDVGDATY----NQKLSEERAQSVANLFLARGFKKENIYVIG 131
Cdd:TIGR03350  33 LFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAGGPAGRVRAEG 111

                          90       100
                  ....*....|....*....|....*.
gi 690974823  132 RGSTQPYVPNTTNENRAINRRVAIVV 157
Cdd:TIGR03350 112 RGDSEPIASNATAAGRARNRRVEIDV 137
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 54-157 1.78e-42

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 136.53  E-value: 1.78e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  54 RLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRG 133
Cdd:cd07185    3 TIYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYG 82

                         90       100
                 ....*....|....*....|....
gi 690974823 134 STQPYVPNTTNENRAINRRVAIVV 157
Cdd:cd07185   83 ESRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 51-159 2.90e-40

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 137.22  E-value: 2.90e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  51 LPERLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVI 130
Cdd:COG2885  185 LLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSKGIPASRITAV 264

                         90       100
                 ....*....|....*....|....*....
gi 690974823 131 GRGSTQPYVPNTTNENRAINRRVAIVVIP 159
Cdd:COG2885  265 GYGESRPVASNDTEEGRAKNRRVEIVVLK 293
MotB COG1360
Flagellar motor protein MotB [Cell motility];
30-159 1.70e-31

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 111.09  E-value: 1.70e-31
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  30 RQVKLLKKEGFVLTDEGWTLGLPERLLFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDDV--GDATY--NQKL 105
Cdd:COG1360   36 EENLLSGQVEVRITEEGLVIEIQDRVLFDSGSAELTPEGRELLDKIAAVLAEVP-NRIRVEGHTDNVpiSTARFpsNWEL 114

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 690974823 106 SEERAQSVANLFLARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVVIP 159
Cdd:COG1360  115 SAARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVILR 168
PRK09967 PRK09967
OmpA family protein;
1-159 2.13e-27

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 100.05  E-value: 2.13e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823   1 MNTRYLklSFIALICITLAGCLS----FGPlkyRQVKLLKKEGFVLTDEGWTLGLPERLLFDFNNAELKQSHEAELVRLA 76
Cdd:PRK09967   1 MIKHLV--APLIFTSLILTGCQSpqgkFTP---EQVAAMQSYGFTESAGDWSLGLSDAILFAKNDYKLLPESQQQIQTMA 75

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  77 SQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFlARG--FKKENIYVIGRGSTQPYVPNTTNENRAINRRVA 154
Cdd:PRK09967  76 AKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADAW-AMGgqIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVA 154


                 ....*
gi 690974823 155 IVVIP 159
Cdd:PRK09967 155 VVITT 159
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 57-150 5.32e-25

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 92.04  E-value: 5.32e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823   57 FDFNNAELKQSHEAELVRLASQLNKYDL-NKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRGST 135
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLKFPELkNTITIEGHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYGAT 80

                          90
                  ....*....|....*
gi 690974823  136 QPYVPNTTNENRAIN 150
Cdd:pfam00691  81 KPITDNKTPEGRARN 95
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 56-157 2.83e-22

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 86.20  E-value: 2.83e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823   56 LFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDDVGDATY----NQKLSEERAQSVANLFLARGFKKENIYVIG 131
Cdd:TIGR03350  33 LFASGSAEVRAEFEPLLLRIAKALAAVP-GRITVVGHTDNVPIRTArfpsNWHLSEARAKAVADVLAQAGGPAGRVRAEG 111

                          90       100
                  ....*....|....*....|....*.
gi 690974823  132 RGSTQPYVPNTTNENRAINRRVAIVV 157
Cdd:TIGR03350 112 RGDSEPIASNATAAGRARNRRVEIDV 137
PRK10510 PRK10510
OmpA family lipoprotein;
12-159 1.78e-20

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 83.77  E-value: 1.78e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  12 ALICITLAGCLSFGPLKYRQV---KL---LKKEGFVLTDEG--WTLGLPERLLFDFNNAELKQSHEAELVRLASQLNKYD 83
Cdd:PRK10510  63 ALIGAAAGAALGGGVGYYMDVqeaKLrdkMRGTGVSVTRSGdnIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYP 142

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 690974823  84 LNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVVIP 159
Cdd:PRK10510 143 KTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGPANPIASNSTAEGKAQNRRVEITLSP 218
PRK07033 PRK07033
DotU family type VI secretion system protein;
56-159 1.17e-18

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 81.25  E-value: 1.17e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  56 LFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDDVGDATY----NQKLSEERAQSVANLFLARGFKKENIYVIG 131
Cdd:PRK07033 317 LFASASTSVRDRYQPVLARVADALNQVK-GNVLVTGYSDNVPIRTArfpsNWELSQARAQAVRALLAARLGQPERVTAEG 395

                         90       100
                 ....*....|....*....|....*...
gi 690974823 132 RGSTQPYVPNTTNENRAINRRVAIVVIP 159
Cdd:PRK07033 396 RGDSDPVAPNDSAENRARNRRVEITLLV 423
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 23-157 3.86e-18

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 78.51  E-value: 3.86e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  23 SFGPL-KYRQVKllkkegfVLTDEGW-TLGLPERLLFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDDVGDAT 100
Cdd:PRK09038 108 ALGPLiESGQVT-------VRRNELWiEIEINSSLLFGSGDAMLSDQAFAILEKVAEVLKPAP-NPIHVEGFTDNVPIAT 179

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 690974823 101 Y----NQKLSEERAQSVANLFLARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVV 157
Cdd:PRK09038 180 AqfpsNWELSAARAASVVRLLADDGVAPSRLAAVGYGEFQPVADNDTAEGRARNRRVVLVI 240
PRK10808 PRK10808
outer membrane protein A; Reviewed
 56-157 8.30e-18

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 78.58  E-value: 8.30e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  56 LFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIV--GHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRG 133
Cdd:PRK10808 227 LFNFNKATLKPEGQQALDQLYSQLSNLDPKDGSVVvlGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMG 306

                         90       100       110
                 ....*....|....*....|....*....|...
gi 690974823 134 STQPYVPNTTNENR---------AINRRVAIVV 157
Cdd:PRK10808 307 KSNPVTGNTCDNVKpraalidclAPDRRVEIEV 339
motB PRK08944
flagellar motor protein MotB; Reviewed
 86-157 1.82e-16

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 74.28  E-value: 1.82e-16
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 690974823  86 KLKIVGHTDDVGDAT--Y--NQKLSEERAQSVAN-LFLARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVV 157
Cdd:PRK08944 211 IITVSGHTDNVPISSelYrsNWDLSSARAVAVAHeLLKVKGFDPQRLKVVGMADTQPLVPNDTAENRARNRRVEIII 287
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 54-157 1.51e-15

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 67.97  E-value: 1.51e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823   54 RLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRG 133
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|....
gi 690974823  134 STQPYVPNTTNENRAINRRVAIVV 157
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVLVY 104
motB PRK08457
flagellar motor protein MotB; Reviewed
 32-155 2.29e-15

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 70.90  E-value: 2.29e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  32 VKLLKKEGFVL--TDEGWTLGLPERLLFDFNNAELKQSHEAELVRLASQLNKYDLNKLKIV--GHTDD--VGDATY--NQ 103
Cdd:PRK08457  99 IERRKGEGGALdqIDNGIALKLPSKLLFENGSAEIINADMMDYLKRIAKIITKLPKQVKINvrGYTDNspLNKSRYkdHY 178

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|..
gi 690974823 104 KLSEERAQSVANLFLARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAI 155
Cdd:PRK08457 179 ELAAARAYNVMKVLIQYGINPNRLSFSSYGSNNPIAPNDSLENRLKNNRVEI 230
PRK06925 PRK06925
flagellar motor protein MotB;
44-157 2.73e-15

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 70.18  E-value: 2.73e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  44 DEGWTLGLPERLLFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDDVGDATY----NQKLSEERAQSVANLFLA 119
Cdd:PRK06925 109 ERGVVLVLQEAVLFETGEADILKQAEPFLHKIGVLLSTIP-NDIKVEGHTDSRPISTYrypsNWELSAARASSVIRYFTS 187

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 690974823 120 R-GFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVV 157
Cdd:PRK06925 188 KeKLDSSRFIAVGYADTKPVVPNTTEENMQENRRVEIVI 226
PRK08126 PRK08126
hypothetical protein; Provisional
 86-157 2.21e-14

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 69.34  E-value: 2.21e-14
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 690974823  86 KLKIVGHTDDV----GDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVV 157
Cdd:PRK08126 355 KVTVTGHTDNQpirsAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGKGDAQPVADNRTPQGRAQNRRVEITV 430
PRK09040 PRK09040
hypothetical protein; Provisional
 55-159 2.89e-11

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 58.87  E-value: 2.89e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  55 LLFDFNNAELKQSHEAELVRLASQLNKYdLNK----LKIVGHTDDV----GDATY--NQKLSEERAQSVANLFLARGFKK 124
Cdd:PRK09040  90 VLFALNSDQLQPEGRELLKSLAGPLAAY-LRArdeiLMVSGFTDDQpvraGNRRFadNWELSAQRALTVTRALIDAGVPA 168

                         90       100       110
                 ....*....|....*....|....*....|....*
gi 690974823 125 ENIYVIGRGSTQPYVPNTTNENRAINRRVAIVVIP 159
Cdd:PRK09040 169 SSVFAAAFGSEQPVASNADDEGRAKNRRVEIAPVP 203
PRK09039 PRK09039
peptidoglycan -binding protein;
55-153 4.43e-11

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 59.59  E-value: 4.43e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  55 LLFDFNNAELKQSHEAELVRLASQLNkyDLNK---------LKIVGHTDDV---GDATY--NQKLSEERAQSVANLFLAR 120
Cdd:PRK09039 226 VLFPTGSAELNPEGQAEIAKLAAALI--ELAKeippeinwvLRVDGHTDNVplsGTGRFrdNWELSSARAISVVKFLIAL 303

                         90       100       110
                 ....*....|....*....|....*....|...
gi 690974823 121 GFKKENIYVIGRGSTQPYVPNTTNENRAINRRV 153
Cdd:PRK09039 304 GVPADRLAAAGFGEFQPLDPGDTPEARARNRRI 336
motB PRK07734
flagellar motor protein MotB; Reviewed
 42-159 2.02e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 54.36  E-value: 2.02e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  42 LTDEGWTLGLPERLLFDFNNAELKQsheaELVRLASQLNKYDL----NKLKIVGHTDDV----GDATYNQKLSEERAQSV 113
Cdd:PRK07734 131 LTEEGLLITILDNILFDSGKADVRL----EDLPLAKEISNLLVsnppRNITISGHTDNVpianAQFASNWELSVMRAVNF 206

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 690974823 114 ANLFLA-RGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVVIP 159
Cdd:PRK07734 207 MQVLLEnKELDPEKFSAKGYGEYKPIASNDTAEGRAKNRRVEVLILP 253
motB PRK09041
motility protein MotB;
54-157 3.38e-07

motility protein MotB;


Pssm-ID: 236365 [Multi-domain]  Cd Length: 317  Bit Score: 48.40  E-value: 3.38e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  54 RLLFDFNNAELKQSHEAELVRLASQLNkyDL-NKLKIVGHTDDV----GDATY-NQKLSEERAQSVANLFLARGFKKENI 127
Cdd:PRK09041 162 RPMFATGSAEVEPYMRDILREIAPVLN--DVpNRISLSGHTDATpyanGEKGYsNWELSADRANASRRELVAGGMDEGKV 239

                         90       100       110
                 ....*....|....*....|....*....|.
gi 690974823 128 Y-VIGRGSTQPYvpNTTNENRAINRRVAIVV 157
Cdd:PRK09041 240 LrVVGLASTMLL--DKKDPLNPVNRRISIVV 268
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 44-157 3.73e-06

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 45.05  E-value: 3.73e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  44 DEGWTLGLPERLLFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDD--VGDATY--NQKLSEERAQS-VANLFL 118
Cdd:PRK06742 106 DTGVSVVIVDNLIFDTGDANVKPEAKEIISQLVGFFQSVP-NPIVVEGHTDSrpIHNDKFpsNWELSSARAANmIHHLIE 184

                         90       100       110
                 ....*....|....*....|....*....|....*....
gi 690974823 119 ARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIVV 157
Cdd:PRK06742 185 VYNVDDKRLAAVGYADTKPVVPNDSPQNWEKNRRVVIYI 223
PRK14693 PRK14693
hypothetical protein; Provisional
 45-159 7.42e-06

hypothetical protein; Provisional


Pssm-ID: 173156 [Multi-domain]  Cd Length: 552  Bit Score: 44.75  E-value: 7.42e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  45 EGWTLGLPERLLFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDD----VGDATYNQKLSEERAQSVANLFLAR 120
Cdd:PRK14693 364 QGWLLVFKSDGAFDVGKANVRADFMHNIERLGLAFAPWP-GDLEVIGHTDSrpirTSEFPDNQALSEARARNVADELRKT 442

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 690974823 121 GFK----------KENIYVIGRGSTQPYVPNTTNENRAINRRVAIV--VIP 159
Cdd:PRK14693 443 ALPggarapenavQRNIEYSGRGDAQPIDTAKTAAAYERNRRVDVLwkVIP 493
PRK07034 PRK07034
hypothetical protein; Provisional
 46-156 1.43e-05

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 44.01  E-value: 1.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  46 GWTLGLPERLLFDFNNAELKQS--HEAELVRLASQLNKYDlNKLKIVGHTDD----VGDATYNQKLSEERAQSVANLF-- 117
Cdd:PRK07034 387 GWLLIFTSDGAFRTGEATLSEEfiNKKNIERLGLALAPWP-GDIEVIGHTDNkpfrSTSGNNNLKLSAARASVVADKLre 465

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|..
gi 690974823 118 ---LARGFKKEnIYVIGRGSTQPYVPNTTNENRAINRRVAIV 156
Cdd:PRK07034 466 stqINETHQRE-ISAIGRGESDPLADNATEEGRKRNRRVDIL 506
motB PRK12799
flagellar motor protein MotB; Reviewed
 42-158 2.43e-05

flagellar motor protein MotB; Reviewed


Pssm-ID: 183756 [Multi-domain]  Cd Length: 421  Bit Score: 43.17  E-value: 2.43e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  42 LTDEGWTLGLPE---RLLFDFNNAELKQSHEAELVRLASQLNkyDL-NKLKIVGHTDDV----GDATY-NQKLSEERAQS 112
Cdd:PRK12799 142 MMDEGLRIQIIDsqnRPMFKMGSAQVEPYMRDILRAIAPILN--DIpNKLSLSGHTDDLpyarGERGYsNWELSADRANA 219

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 690974823 113 VANLFLARGFKKENIY-VIGRGSTQPYVPNTTNEnrAINRRVAIVVI 158
Cdd:PRK12799 220 SRRELLAGGLDEGKILrVVGMASTMRLKEQASDD--PVNRRISILVL 264
PRK06778 PRK06778
hypothetical protein; Validated
 53-158 5.05e-05

hypothetical protein; Validated


Pssm-ID: 235860 [Multi-domain]  Cd Length: 289  Bit Score: 41.84  E-value: 5.05e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 690974823  53 ERLLFDFNNAELKQSHEAELVRLASQLNKYDlNKLKIVGHTDDVG--DATYNQ-KLSEERAQSVANLFLARGFKKENIYV 129
Cdd:PRK06778 152 NRNMFERGSAQIMPFFKTLLVELAPVFDSLD-NKIIITGHTDAMAykNNIYNNwNLSGDRALSARRVLEEAGMPEDKVMQ 230

                         90       100
                 ....*....|....*....|....*....
gi 690974823 130 IGRGSTQPYVpNTTNENRAINRRVAIVVI 158
Cdd:PRK06778 231 VSAMADQMLL-DAKNPQSAGNRRIEIMVL 258
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
86-156 6.18e-05

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 41.01  E-value: 6.18e-05
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 690974823  86 KLKIVGHTDDVGDATYNQKLSEERAQSVANLFLARGFKKENIYVIGRGSTQPYVPNTTNENRAINRRVAIV 156
Cdd:PRK10802 102 KVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYAKNRRAVLV 172
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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