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Conserved domains on  [gi|691143575|ref|WP_032056738|]
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MULTISPECIES: OmpA family protein [Acinetobacter]

Protein Classification

OmpA family protein( domain architecture ID 11458388)

OmpA family membrane protein acts as a porin with low permeability that allows slow penetration of small solutes; may function in peptidoglycan binding

CATH:  3.30.1330.60
Gene Ontology:  GO:0009279|GO:0015288|GO:0042834
PubMed:  17559395|22986056
SCOP:  4001470
TCDB:  1.B.6

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 371-473 8.80e-44

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


:

Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 149.63  E-value: 8.80e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 371 INFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHGS 450
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|...
gi 691143575 451 DQPVAENTTEEGRFKNRRIEFSV 473
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 197-473 2.94e-42

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


:

Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 151.86  E-value: 2.94e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 197 AVPAPEPTAASGVEATTAAAPASLTLSTDDKGAVSQCQAGIGDQGFLATLQTQVKQVFSSTQDCNVDTSQTYAAGFTDKD 276
Cdd:COG2885   15 AAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAALLVLLA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 277 ALAGVLGALKGVPNASLEWIGDKITLKAGDAAALAALTAKVKALVPHTEVVSTAPETAEQSVSNSLTASQTALGSIDPNN 356
Cdd:COG2885   95 ALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAA 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 357 VDVNALVKALNLQIINFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSK 436
Cdd:COG2885  175 LLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK 254

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 691143575 437 GVDGSKLVAQGHGSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:COG2885  255 GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 371-473 8.80e-44

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 149.63  E-value: 8.80e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 371 INFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHGS 450
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|...
gi 691143575 451 DQPVAENTTEEGRFKNRRIEFSV 473
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 197-473 2.94e-42

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 151.86  E-value: 2.94e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 197 AVPAPEPTAASGVEATTAAAPASLTLSTDDKGAVSQCQAGIGDQGFLATLQTQVKQVFSSTQDCNVDTSQTYAAGFTDKD 276
Cdd:COG2885   15 AAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAALLVLLA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 277 ALAGVLGALKGVPNASLEWIGDKITLKAGDAAALAALTAKVKALVPHTEVVSTAPETAEQSVSNSLTASQTALGSIDPNN 356
Cdd:COG2885   95 ALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAA 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 357 VDVNALVKALNLQIINFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSK 436
Cdd:COG2885  175 LLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK 254

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 691143575 437 GVDGSKLVAQGHGSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:COG2885  255 GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
MotB COG1360
Flagellar motor protein MotB [Cell motility];
351-473 2.89e-27

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 107.24  E-value: 2.89e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 351 SIDPNNVDVNALVKALNLQIIN---FASGSSDIPADNKAILDQAATLLNKVSGvKLNVGGHTD----STGNAAANKALSQ 423
Cdd:COG1360   38 NLLSGQVEVRITEEGLVIEIQDrvlFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDnvpiSTARFPSNWELSA 116

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 691143575 424 RRAQAVVDYLTSKGVDGSKLVAQGHGSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:COG1360  117 ARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVI 166
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 373-473 8.63e-23

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 93.91  E-value: 8.63e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575  373 FASGSSDIPADNKAILDQAATLLNKVSGvKLNVGGHTDS----TGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGH 448
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNvpirTARFPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGR 112

                          90       100
                  ....*....|....*....|....*
gi 691143575  449 GSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:TIGR03350 113 GDSEPIASNATAAGRARNRRVEIDV 137
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 373-466 2.71e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 88.19  E-value: 2.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575  373 FASGSSDIPADNKAILDQAATLL---NKVSGVKLNvgGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHG 449
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLkfpELKNTITIE--GHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 691143575  450 SDQPVAENTTEEGRFKN 466
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
motB PRK08944
flagellar motor protein MotB; Reviewed
 332-475 7.57e-20

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 89.68  E-value: 7.57e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 332 ETAEQSVSNSLTASQTALGSIdpnNVDVNALVKALNLQIIN---------------------FASGSSDIPADNKAILDQ 390
Cdd:PRK08944 124 QRGGEASAEVKAEKAAAQEQI---EDLVKKLAQQLEKEIEDgaieieslgqqiiirirekgsFPSGSAFLQPKFKPVVRK 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 391 AATLLNKVSGvKLNVGGHTD----STGNAAANKALSQRRAQAVVDYLTS-KGVDGSKLVAQGHGSDQPVAENTTEEGRFK 465
Cdd:PRK08944 201 IGELLKDVPG-IITVSGHTDnvpiSSELYRSNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAENRAR 279

                        170
                 ....*....|
gi 691143575 466 NRRIEFSVAQ 475
Cdd:PRK08944 280 NRRVEIIIEQ 289
 
Name Accession Description Interval E-value
OmpA_C-like cd07185
Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; ...
 371-473 8.80e-44

Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA; OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.


Pssm-ID: 143586 [Multi-domain]  Cd Length: 106  Bit Score: 149.63  E-value: 8.80e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 371 INFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHGS 450
Cdd:cd07185    4 IYFDFGSAELTPEAKPLLDKLAEVLKKNPDAKIRIEGHTDSRGSDAYNQELSERRAEAVADYLVSKGVDASRITAVGYGE 83

                         90       100
                 ....*....|....*....|...
gi 691143575 451 DQPVAENTTEEGRFKNRRIEFSV 473
Cdd:cd07185   84 SRPIASNDTEEGRAKNRRVEIVI 106
OmpA COG2885
Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall ...
 197-473 2.94e-42

Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442131 [Multi-domain]  Cd Length: 294  Bit Score: 151.86  E-value: 2.94e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 197 AVPAPEPTAASGVEATTAAAPASLTLSTDDKGAVSQCQAGIGDQGFLATLQTQVKQVFSSTQDCNVDTSQTYAAGFTDKD 276
Cdd:COG2885   15 AAGGLLSGAALLLALLGVLGSAGGLLSLADDLAEASAGAAGGAAAGAEAGGLSAGLELLDAGSLSATAAAGAAALLVLLA 94

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 277 ALAGVLGALKGVPNASLEWIGDKITLKAGDAAALAALTAKVKALVPHTEVVSTAPETAEQSVSNSLTASQTALGSIDPNN 356
Cdd:COG2885   95 ALGALGAGLAALLLAIAAAASAAAADALALAAGAAAALGALGASAAAAAAALAAAKALGDSAAAALDAAAKAEAAAAAAA 174

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 357 VDVNALVKALNLQIINFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSK 436
Cdd:COG2885  175 LLPAAVAEVVLLSNVYFDFDSAELTPEAKAALDELAALLKENPDLRIEIEGHTDSRGSDAYNLALSERRAEAVKDYLVSK 254

                        250       260       270
                 ....*....|....*....|....*....|....*..
gi 691143575 437 GVDGSKLVAQGHGSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:COG2885  255 GIPASRITAVGYGESRPVASNDTEEGRAKNRRVEIVV 291
MotB COG1360
Flagellar motor protein MotB [Cell motility];
351-473 2.89e-27

Flagellar motor protein MotB [Cell motility];


Pssm-ID: 440971 [Multi-domain]  Cd Length: 174  Bit Score: 107.24  E-value: 2.89e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 351 SIDPNNVDVNALVKALNLQIIN---FASGSSDIPADNKAILDQAATLLNKVSGvKLNVGGHTD----STGNAAANKALSQ 423
Cdd:COG1360   38 NLLSGQVEVRITEEGLVIEIQDrvlFDSGSAELTPEGRELLDKIAAVLAEVPN-RIRVEGHTDnvpiSTARFPSNWELSA 116

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 691143575 424 RRAQAVVDYLTSKGVDGSKLVAQGHGSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:COG1360  117 ARAAAVVRYLIEGGVPPERLSAVGYGDTRPLAPNDTPEGRARNRRVEIVI 166
type_VI_ompA TIGR03350
type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, ...
 373-473 8.63e-23

type VI secretion system peptidoglycan-associated domain; The flagellar motor protein MotB, the Gram-negative bacterial outer membrane protein OmpA (with an N-terminal outer membrane beta barrel domain) share a C-terminal peptidoglycan-associating homology region. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]


Pssm-ID: 274533 [Multi-domain]  Cd Length: 137  Bit Score: 93.91  E-value: 8.63e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575  373 FASGSSDIPADNKAILDQAATLLNKVSGvKLNVGGHTDS----TGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGH 448
Cdd:TIGR03350  34 FASGSAEVRAEFEPLLLRIAKALAAVPG-RITVVGHTDNvpirTARFPSNWHLSEARAKAVADVLAQAGGPAGRVRAEGR 112

                          90       100
                  ....*....|....*....|....*
gi 691143575  449 GSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:TIGR03350 113 GDSEPIASNATAAGRARNRRVEIDV 137
OmpA pfam00691
OmpA family; The Pfam entry also includes MotB and related proteins which are not included in ...
 373-466 2.71e-21

OmpA family; The Pfam entry also includes MotB and related proteins which are not included in the Prosite family.


Pssm-ID: 425825 [Multi-domain]  Cd Length: 95  Bit Score: 88.19  E-value: 2.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575  373 FASGSSDIPADNKAILDQAATLL---NKVSGVKLNvgGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHG 449
Cdd:pfam00691   1 FDPGSSQLTPKAKATLDEIADLLkfpELKNTITIE--GHTDTVGSAAYNWELSQRRAEAVRRYLVNFGVPPSRISVVGYG 78

                          90
                  ....*....|....*..
gi 691143575  450 SDQPVAENTTEEGRFKN 466
Cdd:pfam00691  79 ATKPITDNKTPEGRARN 95
motB PRK08944
flagellar motor protein MotB; Reviewed
 332-475 7.57e-20

flagellar motor protein MotB; Reviewed


Pssm-ID: 236356 [Multi-domain]  Cd Length: 302  Bit Score: 89.68  E-value: 7.57e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 332 ETAEQSVSNSLTASQTALGSIdpnNVDVNALVKALNLQIIN---------------------FASGSSDIPADNKAILDQ 390
Cdd:PRK08944 124 QRGGEASAEVKAEKAAAQEQI---EDLVKKLAQQLEKEIEDgaieieslgqqiiirirekgsFPSGSAFLQPKFKPVVRK 200

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 391 AATLLNKVSGvKLNVGGHTD----STGNAAANKALSQRRAQAVVDYLTS-KGVDGSKLVAQGHGSDQPVAENTTEEGRFK 465
Cdd:PRK08944 201 IGELLKDVPG-IITVSGHTDnvpiSSELYRSNWDLSSARAVAVAHELLKvKGFDPQRLKVVGMADTQPLVPNDTAENRAR 279

                        170
                 ....*....|
gi 691143575 466 NRRIEFSVAQ 475
Cdd:PRK08944 280 NRRVEIIIEQ 289
Pal_lipo TIGR02802
peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the ...
 370-471 2.02e-19

peptidoglycan-associated lipoprotein; Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.


Pssm-ID: 274307 [Multi-domain]  Cd Length: 104  Bit Score: 82.99  E-value: 2.02e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575  370 IINFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHG 449
Cdd:TIGR02802   1 RVYFDFDSSDLKSEAQATLDAHAQYLKKNPSVRVTIEGHTDERGTREYNLALGERRANAVKDYLQSKGVSASQIETVSYG 80

                          90       100
                  ....*....|....*....|..
gi 691143575  450 SDQPVAENTTEEGRFKNRRIEF 471
Cdd:TIGR02802  81 KEKPAALGHDEAAWAKNRRAVL 102
PRK08126 PRK08126
hypothetical protein; Provisional
 373-475 6.48e-19

hypothetical protein; Provisional


Pssm-ID: 236157 [Multi-domain]  Cd Length: 432  Bit Score: 88.60  E-value: 6.48e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIPADNKAILDQAATLLNKVSGvKLNVGGHTDS----TGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGH 448
Cdd:PRK08126 327 FVPGQATVNPAMGPLIAKIAREIARVGG-KVTVTGHTDNqpirSAQFASNLVLSEKRAAQVAQMLQSAGVPASRLEAVGK 405

                         90       100
                 ....*....|....*....|....*..
gi 691143575 449 GSDQPVAENTTEEGRFKNRRIEFSVAQ 475
Cdd:PRK08126 406 GDAQPVADNRTPQGRAQNRRVEITVAE 432
PRK10510 PRK10510
OmpA family lipoprotein;
371-474 1.97e-18

OmpA family lipoprotein;


Pssm-ID: 182507 [Multi-domain]  Cd Length: 219  Bit Score: 83.77  E-value: 1.97e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 371 INFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHGS 450
Cdd:PRK10510 114 VTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDLNMRLSQQRADSVASALITQGVDASRIRTQGMGP 193

                         90       100
                 ....*....|....*....|....
gi 691143575 451 DQPVAENTTEEGRFKNRRIEFSVA 474
Cdd:PRK10510 194 ANPIASNSTAEGKAQNRRVEITLS 217
PRK09039 PRK09039
peptidoglycan -binding protein;
373-471 5.25e-18

peptidoglycan -binding protein;


Pssm-ID: 181619 [Multi-domain]  Cd Length: 343  Bit Score: 85.02  E-value: 5.25e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIPADNKAILDQAATLLNKVSG--------VkLNVGGHTD-----STGNAAANKALSQRRAQAVVDYLTSKGVD 439
Cdd:PRK09039 228 FPTGSAELNPEGQAEIAKLAAALIELAKeippeinwV-LRVDGHTDnvplsGTGRFRDNWELSSARAISVVKFLIALGVP 306

                         90       100       110
                 ....*....|....*....|....*....|..
gi 691143575 440 GSKLVAQGHGSDQPVAENTTEEGRFKNRRIEF 471
Cdd:PRK09039 307 ADRLAAAGFGEFQPLDPGDTPEARARNRRIEL 338
PRK07033 PRK07033
DotU family type VI secretion system protein;
373-473 4.25e-17

DotU family type VI secretion system protein;


Pssm-ID: 180801 [Multi-domain]  Cd Length: 427  Bit Score: 83.18  E-value: 4.25e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIPADNKAILDQAATLLNKVSGvKLNVGGHTDS----TGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGH 448
Cdd:PRK07033 318 FASASTSVRDRYQPVLARVADALNQVKG-NVLVTGYSDNvpirTARFPSNWELSQARAQAVRALLAARLGQPERVTAEGR 396

                         90       100
                 ....*....|....*....|....*
gi 691143575 449 GSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:PRK07033 397 GDSDPVAPNDSAENRARNRRVEITL 421
PRK09038 PRK09038
flagellar motor protein MotD; Reviewed
 373-473 1.48e-14

flagellar motor protein MotD; Reviewed


Pssm-ID: 181618 [Multi-domain]  Cd Length: 281  Bit Score: 73.89  E-value: 1.48e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIPADNKAILDQAATLLNKV-SGVKlnVGGHTD----STGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQG 447
Cdd:PRK09038 137 FGSGDAMLSDQAFAILEKVAEVLKPApNPIH--VEGFTDnvpiATAQFPSNWELSAARAASVVRLLADDGVAPSRLAAVG 214

                         90       100
                 ....*....|....*....|....*.
gi 691143575 448 HGSDQPVAENTTEEGRFKNRRIEFSV 473
Cdd:PRK09038 215 YGEFQPVADNDTAEGRARNRRVVLVI 240
PRK06925 PRK06925
flagellar motor protein MotB;
373-470 1.27e-13

flagellar motor protein MotB;


Pssm-ID: 235887 [Multi-domain]  Cd Length: 230  Bit Score: 70.18  E-value: 1.27e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIPADNKAILDQAATLLNKVSGVkLNVGGHTDS----TGNAAANKALSQRRAQAVVDYLTSK-GVDGSKLVAQG 447
Cdd:PRK06925 122 FETGEADILKQAEPFLHKIGVLLSTIPND-IKVEGHTDSrpisTYRYPSNWELSAARASSVIRYFTSKeKLDSSRFIAVG 200

                         90       100
                 ....*....|....*....|...
gi 691143575 448 HGSDQPVAENTTEEGRFKNRRIE 470
Cdd:PRK06925 201 YADTKPVVPNTTEENMQENRRVE 223
PRK10808 PRK10808
outer membrane protein A; Reviewed
 405-473 3.48e-12

outer membrane protein A; Reviewed


Pssm-ID: 236764 [Multi-domain]  Cd Length: 351  Bit Score: 67.41  E-value: 3.48e-12
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 691143575 405 VGGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHGSDQPVAENTTEEGRFK---------NRRIEFSV 473
Cdd:PRK10808 262 VLGYTDRIGSDAYNQGLSEKRAQSVVDYLVSKGIPADKISARGMGKSNPVTGNTCDNVKPRaalidclapDRRVEIEV 339
motB PRK08457
flagellar motor protein MotB; Reviewed
 373-471 4.47e-11

flagellar motor protein MotB; Reviewed


Pssm-ID: 181435 [Multi-domain]  Cd Length: 257  Bit Score: 63.20  E-value: 4.47e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIP-ADNKAILDQAATLLNKV-SGVKLNVGGHTDST----GNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQ 446
Cdd:PRK08457 126 FENGSAEIInADMMDYLKRIAKIITKLpKQVKINVRGYTDNSplnkSRYKDHYELAAARAYNVMKVLIQYGINPNRLSFS 205

                         90       100
                 ....*....|....*....|....*
gi 691143575 447 GHGSDQPVAENTTEEGRFKNRRIEF 471
Cdd:PRK08457 206 SYGSNNPIAPNDSLENRLKNNRVEI 230
PRK10802 PRK10802
peptidoglycan-associated lipoprotein Pal;
370-468 1.07e-10

peptidoglycan-associated lipoprotein Pal;


Pssm-ID: 182744 [Multi-domain]  Cd Length: 173  Bit Score: 60.27  E-value: 1.07e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 370 IINFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHG 449
Cdd:PRK10802  70 IVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYKVTVEGHADERGTPEYNIALGERRANAVKMYLQGKGVSADQISIVSYG 149

                         90
                 ....*....|....*....
gi 691143575 450 SDQPVAENTTEEGRFKNRR 468
Cdd:PRK10802 150 KEKPAVLGHDEAAYAKNRR 168
PRK09967 PRK09967
OmpA family protein;
371-469 1.96e-10

OmpA family protein;


Pssm-ID: 182172 [Multi-domain]  Cd Length: 160  Bit Score: 59.22  E-value: 1.96e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 371 INFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDSTGNAAANKALSQRRAQAVVD-YLTSKGVDGSKLVAQGHG 449
Cdd:PRK09967  54 ILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNEGLSLKRANVVADaWAMGGQIPRSNLTTQGLG 133

                         90       100
                 ....*....|....*....|
gi 691143575 450 SDQPVAENTTEEGRFKNRRI 469
Cdd:PRK09967 134 KKYPIASNKTAQGRAENRRV 153
PRK09040 PRK09040
hypothetical protein; Provisional
 403-472 2.18e-09

hypothetical protein; Provisional


Pssm-ID: 181620 [Multi-domain]  Cd Length: 214  Bit Score: 57.33  E-value: 2.18e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 691143575 403 LNVGGHTD----STGNA--AANKALSQRRAQAVVDYLTSKGVDGSKLVAQGHGSDQPVAENTTEEGRFKNRRIEFS 472
Cdd:PRK09040 125 LMVSGFTDdqpvRAGNRrfADNWELSAQRALTVTRALIDAGVPASSVFAAAFGSEQPVASNADDEGRAKNRRVEIA 200
motB PRK06667
flagellar motor protein MotB; Validated
 373-470 2.60e-09

flagellar motor protein MotB; Validated


Pssm-ID: 180652 [Multi-domain]  Cd Length: 252  Bit Score: 57.88  E-value: 2.60e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIP-ADNKAILDQAATLLNKVS--GVKLNVGGHTDST-----GNAAANKALSQRRAQAVVDYLTSKGV-DGSKL 443
Cdd:PRK06667 129 FYPGSAEVKlEENRETLQKIASFIGFLDlaGRNFRIEGHTDNVdvnpeGPWKSNWELSGARAVNMLEYILNYGDqSESWF 208

                         90       100
                 ....*....|....*....|....*..
gi 691143575 444 VAQGHGSDQPVAENTTEEGRFKNRRIE 470
Cdd:PRK06667 209 QVSGFAGSRPLATEDTPEGRAYNRRID 235
motB PRK07734
flagellar motor protein MotB; Reviewed
 371-470 2.68e-09

flagellar motor protein MotB; Reviewed


Pssm-ID: 236080 [Multi-domain]  Cd Length: 259  Bit Score: 57.83  E-value: 2.68e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 371 INFASGSSDIPADNKAILDQAATLLNKVSGVKLNVGGHTDST--GNA--AANKALSQRRAqavVDY----LTSKGVDGSK 442
Cdd:PRK07734 144 ILFDSGKADVRLEDLPLAKEISNLLVSNPPRNITISGHTDNVpiANAqfASNWELSVMRA---VNFmqvlLENKELDPEK 220

                         90       100
                 ....*....|....*....|....*...
gi 691143575 443 LVAQGHGSDQPVAENTTEEGRFKNRRIE 470
Cdd:PRK07734 221 FSAKGYGEYKPIASNDTAEGRAKNRRVE 248
PRK06742 PRK06742
flagellar motor protein MotS; Reviewed
 373-469 2.14e-05

flagellar motor protein MotS; Reviewed


Pssm-ID: 102525 [Multi-domain]  Cd Length: 225  Bit Score: 45.82  E-value: 2.14e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 691143575 373 FASGSSDIPADNKAILDQAATLLNKVSGvKLNVGGHTDS----TGNAAANKALSQRRAQAVVDYLTS-KGVDGSKLVAQG 447
Cdd:PRK06742 119 FDTGDANVKPEAKEIISQLVGFFQSVPN-PIVVEGHTDSrpihNDKFPSNWELSSARAANMIHHLIEvYNVDDKRLAAVG 197

                         90       100
                 ....*....|....*....|..
gi 691143575 448 HGSDQPVAENTTEEGRFKNRRI 469
Cdd:PRK06742 198 YADTKPVVPNDSPQNWEKNRRV 219
PRK07034 PRK07034
hypothetical protein; Provisional
 403-470 2.08e-04

hypothetical protein; Provisional


Pssm-ID: 168775 [Multi-domain]  Cd Length: 536  Bit Score: 43.62  E-value: 2.08e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 691143575 403 LNVGGHTD------STGNAaaNKALSQRRAQAVVDYL-TSKGVDGS---KLVAQGHGSDQPVAENTTEEGRFKNRRIE 470
Cdd:PRK07034 429 IEVIGHTDnkpfrsTSGNN--NLKLSAARASVVADKLrESTQINEThqrEISAIGRGESDPLADNATEEGRKRNRRVD 504
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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