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Conserved domains on  [gi|693183823|ref|WP_032310194|]
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MULTISPECIES: lipoprotein [Enterobacteriaceae]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TrbM super family cl21715
TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In ...
 1-97 2.77e-09

TrbM; This family contains the bacterial protein TrbM (approximately 180 residues long). In Comamonas testosteroni T-2, TrbM is derived from the IncP1beta plasmid pTSA, which encodes the widespread genes for p-toluenesulfonate (TSA) degradation. This family also includes MPFK and its functional homolog kikA, which are required for efficient conjugative transfer in IncP-9 plasmids.


The actual alignment was detected with superfamily member PRK13893:

Pssm-ID: 451366  Cd Length: 193  Bit Score: 51.70  E-value: 2.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 693183823   1 MKAILSVLVLAASSVAMTAPAKAAD--------PCEQVLCLygvmTTGNVASGCSGPVGDYFNIIEKKhgsfLPDhTSRK 72
Cdd:PRK13893   2 KKKLLALAALVAALGSTAGTASAQDvltgdtrlACEAILCL----SSGTRPSECTPSLSRYFSITKRK----LSD-TIKA 72

                         90       100       110
                 ....*....|....*....|....*....|
gi 693183823  73 RKKQLDKCSSAG-----SDVVEKINNKFGR 97
Cdd:PRK13893  73 RLNFLQLCPVANqtpemQSLVSAISRGAGR 102
 
Name Accession Description Interval E-value
PRK13893 PRK13893
conjugal transfer protein TrbM; Provisional
 1-97 2.77e-09

conjugal transfer protein TrbM; Provisional


Pssm-ID: 237548  Cd Length: 193  Bit Score: 51.70  E-value: 2.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 693183823   1 MKAILSVLVLAASSVAMTAPAKAAD--------PCEQVLCLygvmTTGNVASGCSGPVGDYFNIIEKKhgsfLPDhTSRK 72
Cdd:PRK13893   2 KKKLLALAALVAALGSTAGTASAQDvltgdtrlACEAILCL----SSGTRPSECTPSLSRYFSITKRK----LSD-TIKA 72

                         90       100       110
                 ....*....|....*....|....*....|
gi 693183823  73 RKKQLDKCSSAG-----SDVVEKINNKFGR 97
Cdd:PRK13893  73 RLNFLQLCPVANqtpemQSLVSAISRGAGR 102
 
Name Accession Description Interval E-value
PRK13893 PRK13893
conjugal transfer protein TrbM; Provisional
 1-97 2.77e-09

conjugal transfer protein TrbM; Provisional


Pssm-ID: 237548  Cd Length: 193  Bit Score: 51.70  E-value: 2.77e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 693183823   1 MKAILSVLVLAASSVAMTAPAKAAD--------PCEQVLCLygvmTTGNVASGCSGPVGDYFNIIEKKhgsfLPDhTSRK 72
Cdd:PRK13893   2 KKKLLALAALVAALGSTAGTASAQDvltgdtrlACEAILCL----SSGTRPSECTPSLSRYFSITKRK----LSD-TIKA 72

                         90       100       110
                 ....*....|....*....|....*....|
gi 693183823  73 RKKQLDKCSSAG-----SDVVEKINNKFGR 97
Cdd:PRK13893  73 RLNFLQLCPVANqtpemQSLVSAISRGAGR 102
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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