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Conserved domains on  [gi|695323326|ref|WP_032521640|]
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UDP-3-O-acyl-N-acetylglucosamine deacetylase [Prochlorococcus marinus]

Protein Classification

UDP-3-O-acyl-N-acetylglucosamine deacetylase( domain architecture ID 11141887)

UDP-3-O-acyl-N-acetylglucosamine deacetylase catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
LpxC pfam03331
UDP-3-O-acyl N-acetylglycosamine deacetylase; The enzymes in this family catalyze the second ...
13-276 9.06e-111

UDP-3-O-acyl N-acetylglycosamine deacetylase; The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A.


:

Pssm-ID: 460886  Cd Length: 271  Bit Score: 320.88  E-value: 9.06e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   13 TLAGVISREGIGLHSGEKTRVRIS-SYEKEGYYVSFRD-NPNEIFKLTQDLIGSTMLCTAVKLGSRNLYTIEHLLSSMAG 90
Cdd:pfam03331   3 TLKKPVSLSGVGLHSGKPVTLTLRpAPANTGIVFRRTDlLGDPPIPASPENVVDTRLSTTLGNGGARVSTVEHLLAALAG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   91 CGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFReINKSIILNKEGSVIAATPSEKTTIISTISFSYKA 170
Cdd:pfam03331  83 LGIDNALIEIDGPEVPILDGSAAPFVEAIQSAGIVEQDAPRKFLR-IKKPVEVEDGDKFVRALPSDGFRITYTIDFDHPA 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  171 IGNQTFVIDLNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALVCDGDEWVNP-PLRFDNEPIRHKILDLIGDL 249
Cdd:pfam03331 162 IGRQSFSFDLTPESFAREIAPARTFGFLKEVEALRAAGLALGGSLDNAVVIDDDGVLNPeGLRFPDEFVRHKILDLIGDL 241
                         250       260
                  ....*....|....*....|....*...
gi 695323326  250 ALVGLP-RAQILVYKGSHSLNALLASSL 276
Cdd:pfam03331 242 ALLGAPlLGHFIAYKSGHALNNQLLRAL 269
 
Name Accession Description Interval E-value
LpxC pfam03331
UDP-3-O-acyl N-acetylglycosamine deacetylase; The enzymes in this family catalyze the second ...
13-276 9.06e-111

UDP-3-O-acyl N-acetylglycosamine deacetylase; The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A.


Pssm-ID: 460886  Cd Length: 271  Bit Score: 320.88  E-value: 9.06e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   13 TLAGVISREGIGLHSGEKTRVRIS-SYEKEGYYVSFRD-NPNEIFKLTQDLIGSTMLCTAVKLGSRNLYTIEHLLSSMAG 90
Cdd:pfam03331   3 TLKKPVSLSGVGLHSGKPVTLTLRpAPANTGIVFRRTDlLGDPPIPASPENVVDTRLSTTLGNGGARVSTVEHLLAALAG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   91 CGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFReINKSIILNKEGSVIAATPSEKTTIISTISFSYKA 170
Cdd:pfam03331  83 LGIDNALIEIDGPEVPILDGSAAPFVEAIQSAGIVEQDAPRKFLR-IKKPVEVEDGDKFVRALPSDGFRITYTIDFDHPA 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  171 IGNQTFVIDLNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALVCDGDEWVNP-PLRFDNEPIRHKILDLIGDL 249
Cdd:pfam03331 162 IGRQSFSFDLTPESFAREIAPARTFGFLKEVEALRAAGLALGGSLDNAVVIDDDGVLNPeGLRFPDEFVRHKILDLIGDL 241
                         250       260
                  ....*....|....*....|....*...
gi 695323326  250 ALVGLP-RAQILVYKGSHSLNALLASSL 276
Cdd:pfam03331 242 ALLGAPlLGHFIAYKSGHALNNQLLRAL 269
LpxC COG0774
UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell wall/membrane/envelope biogenesis]; ...
13-277 2.90e-103

UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell wall/membrane/envelope biogenesis]; UDP-3-O-acyl-N-acetylglucosamine deacetylase is part of the Pathway/BioSystem: Lipid A biosynthesis


Pssm-ID: 440537  Cd Length: 276  Bit Score: 301.95  E-value: 2.90e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  13 TLAGVISREGIGLHSGEKTRVRIS-SYEKEGYYvsFR--DNPNE-IFKLTQDLIGSTMLCTAVKLGSRNLYTIEHLLSSM 88
Cdd:COG0774    5 TLKKPVSLSGVGLHSGKKVTLTLRpAPANTGIV--FRrtDLPGQpEIPARADNVVDTRLCTTLGKGGVRVSTVEHLMAAL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  89 AGCGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFReINKSIILNKEGSVIAATPSEKTTIISTISFSY 168
Cdd:COG0774   83 AGLGIDNALIEIDGPEVPIMDGSAAPFVELIQEAGIVEQDAPRRFIR-IKKPVRVEDGDKWAELLPYDGFRIDFTIDFDH 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326 169 KAIGNQTFVIDLNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALVCDGDEWVNP-PLRFDNEPIRHKILDLIG 247
Cdd:COG0774  162 PAIGRQSASLDLSPESFVREIARARTFGFLKDVEALRAAGLALGGSLDNAIVIDDDGVLNPeGLRFPDEFVRHKILDAIG 241
                        250       260       270
                 ....*....|....*....|....*....|.
gi 695323326 248 DLALVGLP-RAQILVYKGSHSLNALLASSLK 277
Cdd:COG0774  242 DLALLGAPlLGHFIAYKSGHALNNALLRALL 272
lpxC TIGR00325
UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc ...
13-276 1.64e-68

UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 273014 [Multi-domain]  Cd Length: 297  Bit Score: 214.31  E-value: 1.64e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   13 TLAGVISREGIGLHSGEKTRVRISSY-EKEGYYVSFRD-NPNEIFKLTQDLIGSTMLCTA-VKLGSRnLYTIEHLLSSMA 89
Cdd:TIGR00325   5 TIKRSVQVTGVGLHSGVKVTLTLRPApANTGVVFYRTDlNPPVDFPADPKSVRDTMLCTClGNEGAR-ISTVEHLLAALA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   90 GCGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFReINKSIILNKEGSVIAATPSEKTTIISTISFSYK 169
Cdd:TIGR00325  84 ALGIDNLVIEVNAPEIPIMDGSALPFVYLLLDAGIDELNAAKKFIR-IKQTVRVEDGDKFVEFKPYNGFSLDFTIDFNHP 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  170 AIGNQTFVIDLNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALVCDGDEWVNPP-LRFDNEPIRHKILDLIGD 248
Cdd:TIGR00325 163 AIGKQRYAMNFSADAFMRQIARARTFGFMRDIEYLRSRGLCKGGSLDNAIVLDDYRILNEDgLRFEDEFVRHKMLDAIGD 242
                         250       260
                  ....*....|....*....|....*....
gi 695323326  249 LALVGL-PRAQILVYKGSHSLNALLASSL 276
Cdd:TIGR00325 243 LFMLGHnIIGAFTAYKSSHKLNNKLLQAI 271
PRK13188 PRK13188
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R) ...
13-277 6.26e-61

bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed


Pssm-ID: 237296 [Multi-domain]  Cd Length: 464  Bit Score: 199.39  E-value: 6.26e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  13 TLAGVISREGIGLHSGEKTRVRISSyEKEGYYVSFR--DNPNE-IFKLTQDLIGSTMLCTAVKLGSRNLYTIEHLLSSMA 89
Cdd:PRK13188   7 TIKKEVSLQGVGLHTGKEVTITFKP-APENHGYKFKrtDLEGQpIIDADVDNVVDTERGTTLEKNGVKVHTVEHVLAALY 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  90 GCGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFrEINKSIIL--NKEGSVIAATPSEKTTIISTISFS 167
Cdd:PRK13188  86 GLGIDNCLIELDGPEPPIMDGSSKPFVEAIEEAGIVEQDAPRNYY-VIKETIEYhdEETGSEIIALPLDDFRITVMVDFD 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326 168 YKAIGNQTFVIDlNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALV------------------------CDG 223
Cdd:PRK13188 165 SKVLGSQHATLF-DLSEFKKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVivdkemsqeeldklakkfgkdhisVKE 243
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 695323326 224 DEWV-NPPLRFDNEPIRHKILDLIGDLALVGLP-RAQILVYKGSHSLNALLASSLK 277
Cdd:PRK13188 244 NGILnNRPLRFPNEPARHKLLDVIGDLALIGKPiKGRIIAARPGHAINVEFAKKLK 299
 
Name Accession Description Interval E-value
LpxC pfam03331
UDP-3-O-acyl N-acetylglycosamine deacetylase; The enzymes in this family catalyze the second ...
13-276 9.06e-111

UDP-3-O-acyl N-acetylglycosamine deacetylase; The enzymes in this family catalyze the second step in the biosynthetic pathway for lipid A.


Pssm-ID: 460886  Cd Length: 271  Bit Score: 320.88  E-value: 9.06e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   13 TLAGVISREGIGLHSGEKTRVRIS-SYEKEGYYVSFRD-NPNEIFKLTQDLIGSTMLCTAVKLGSRNLYTIEHLLSSMAG 90
Cdd:pfam03331   3 TLKKPVSLSGVGLHSGKPVTLTLRpAPANTGIVFRRTDlLGDPPIPASPENVVDTRLSTTLGNGGARVSTVEHLLAALAG 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   91 CGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFReINKSIILNKEGSVIAATPSEKTTIISTISFSYKA 170
Cdd:pfam03331  83 LGIDNALIEIDGPEVPILDGSAAPFVEAIQSAGIVEQDAPRKFLR-IKKPVEVEDGDKFVRALPSDGFRITYTIDFDHPA 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  171 IGNQTFVIDLNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALVCDGDEWVNP-PLRFDNEPIRHKILDLIGDL 249
Cdd:pfam03331 162 IGRQSFSFDLTPESFAREIAPARTFGFLKEVEALRAAGLALGGSLDNAVVIDDDGVLNPeGLRFPDEFVRHKILDLIGDL 241
                         250       260
                  ....*....|....*....|....*...
gi 695323326  250 ALVGLP-RAQILVYKGSHSLNALLASSL 276
Cdd:pfam03331 242 ALLGAPlLGHFIAYKSGHALNNQLLRAL 269
LpxC COG0774
UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell wall/membrane/envelope biogenesis]; ...
13-277 2.90e-103

UDP-3-O-acyl-N-acetylglucosamine deacetylase [Cell wall/membrane/envelope biogenesis]; UDP-3-O-acyl-N-acetylglucosamine deacetylase is part of the Pathway/BioSystem: Lipid A biosynthesis


Pssm-ID: 440537  Cd Length: 276  Bit Score: 301.95  E-value: 2.90e-103
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  13 TLAGVISREGIGLHSGEKTRVRIS-SYEKEGYYvsFR--DNPNE-IFKLTQDLIGSTMLCTAVKLGSRNLYTIEHLLSSM 88
Cdd:COG0774    5 TLKKPVSLSGVGLHSGKKVTLTLRpAPANTGIV--FRrtDLPGQpEIPARADNVVDTRLCTTLGKGGVRVSTVEHLMAAL 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  89 AGCGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFReINKSIILNKEGSVIAATPSEKTTIISTISFSY 168
Cdd:COG0774   83 AGLGIDNALIEIDGPEVPIMDGSAAPFVELIQEAGIVEQDAPRRFIR-IKKPVRVEDGDKWAELLPYDGFRIDFTIDFDH 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326 169 KAIGNQTFVIDLNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALVCDGDEWVNP-PLRFDNEPIRHKILDLIG 247
Cdd:COG0774  162 PAIGRQSASLDLSPESFVREIARARTFGFLKDVEALRAAGLALGGSLDNAIVIDDDGVLNPeGLRFPDEFVRHKILDAIG 241
                        250       260       270
                 ....*....|....*....|....*....|.
gi 695323326 248 DLALVGLP-RAQILVYKGSHSLNALLASSLK 277
Cdd:COG0774  242 DLALLGAPlLGHFIAYKSGHALNNALLRALL 272
lpxC TIGR00325
UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc ...
13-276 1.64e-68

UDP-3-0-acyl N-acetylglucosamine deacetylase; UDP-3-O-(R-3-hydroxymyristoyl)-GlcNAc deacetylase from E. coli , LpxC, was previously designated EnvA. This enzyme is involved in lipid-A precursor biosynthesis. It is essential for cell viability. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]


Pssm-ID: 273014 [Multi-domain]  Cd Length: 297  Bit Score: 214.31  E-value: 1.64e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   13 TLAGVISREGIGLHSGEKTRVRISSY-EKEGYYVSFRD-NPNEIFKLTQDLIGSTMLCTA-VKLGSRnLYTIEHLLSSMA 89
Cdd:TIGR00325   5 TIKRSVQVTGVGLHSGVKVTLTLRPApANTGVVFYRTDlNPPVDFPADPKSVRDTMLCTClGNEGAR-ISTVEHLLAALA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   90 GCGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFReINKSIILNKEGSVIAATPSEKTTIISTISFSYK 169
Cdd:TIGR00325  84 ALGIDNLVIEVNAPEIPIMDGSALPFVYLLLDAGIDELNAAKKFIR-IKQTVRVEDGDKFVEFKPYNGFSLDFTIDFNHP 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  170 AIGNQTFVIDLNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALVCDGDEWVNPP-LRFDNEPIRHKILDLIGD 248
Cdd:TIGR00325 163 AIGKQRYAMNFSADAFMRQIARARTFGFMRDIEYLRSRGLCKGGSLDNAIVLDDYRILNEDgLRFEDEFVRHKMLDAIGD 242
                         250       260
                  ....*....|....*....|....*....
gi 695323326  249 LALVGL-PRAQILVYKGSHSLNALLASSL 276
Cdd:TIGR00325 243 LFMLGHnIIGAFTAYKSSHKLNNKLLQAI 271
PRK13188 PRK13188
bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R) ...
13-277 6.26e-61

bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed


Pssm-ID: 237296 [Multi-domain]  Cd Length: 464  Bit Score: 199.39  E-value: 6.26e-61
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  13 TLAGVISREGIGLHSGEKTRVRISSyEKEGYYVSFR--DNPNE-IFKLTQDLIGSTMLCTAVKLGSRNLYTIEHLLSSMA 89
Cdd:PRK13188   7 TIKKEVSLQGVGLHTGKEVTITFKP-APENHGYKFKrtDLEGQpIIDADVDNVVDTERGTTLEKNGVKVHTVEHVLAALY 85
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  90 GCGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFrEINKSIIL--NKEGSVIAATPSEKTTIISTISFS 167
Cdd:PRK13188  86 GLGIDNCLIELDGPEPPIMDGSSKPFVEAIEEAGIVEQDAPRNYY-VIKETIEYhdEETGSEIIALPLDDFRITVMVDFD 164
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326 168 YKAIGNQTFVIDlNPKSFVEMIAPARTFGFKDQFQELSELGLIKGGSLENALV------------------------CDG 223
Cdd:PRK13188 165 SKVLGSQHATLF-DLSEFKKEIAPARTFVFLHEVEALLEQGLIKGGDLDNAIVivdkemsqeeldklakkfgkdhisVKE 243
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 695323326 224 DEWV-NPPLRFDNEPIRHKILDLIGDLALVGLP-RAQILVYKGSHSLNALLASSLK 277
Cdd:PRK13188 244 NGILnNRPLRFPNEPARHKLLDVIGDLALIGKPiKGRIIAARPGHAINVEFAKKLK 299
PRK13187 PRK13187
UDP-3-O-acyl N-acetylglycosamine deacetylase;
4-276 1.40e-29

UDP-3-O-acyl N-acetylglycosamine deacetylase;


Pssm-ID: 237295  Cd Length: 304  Bit Score: 113.40  E-value: 1.40e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326   4 WPSNYDscyTLAGVISREGIGLHSGEKTRVRIS--------------SYEKEGYYVSFRDNPNeiFKLTQDLigSTMLCT 69
Cdd:PRK13187   7 WATSQG---TLARPLTIDGHGLHTGRRVGVRILparpedgvtgivfrRVEQGRTLATLPVDPA--LRRAQPL--CTMLRN 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326  70 AVKLGSRnlyTIEHLLSSMAGCGLSYIHIEVDGKEIPLLDGSAIQWVKEFEAVGIKKAPKPDNFFREINKSIILNKEGSV 149
Cdd:PRK13187  80 ADGVGVR---TVEHLLASLLACEIDHAIVELDAEEVPILDGSATPWVDAIRACGRVALDAPKRFIRVLRTVVVTDGEGEQ 156
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 695323326 150 ---IAATPSEKTTIisTISFSYKAIGNQTFVIDLNPKSFVEMIAPARTFGFKDQ------FQELSELGLIKGGSLENALV 220
Cdd:PRK13187 157 rreMRIEPAPRYEL--SVRNDLRGFGEMHWDGALTPAAFATEIAPSRSYGRVKWavpailAGYLRGVPILRGARPSCTAS 234
                        250       260       270       280       290
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 695323326 221 CDGDEwVNPPLRFDNEPIRHKILDLIGDLALVGLP-RAQILVYKGSHSLNALLASSL 276
Cdd:PRK13187 235 IVGKR-VLGGMRLPDEFVRHRVLDLVGDLALAGAPlLARVSALRPSHEMNFRLVDAL 290
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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