NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|695766834|ref|WP_032689855|]
View 

entericidin A/B family lipoprotein [Raoultella planticola]

Protein Classification

COG5510 family protein( domain architecture ID 10009370)

COG5510 family protein

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-43 1.46e-10

Predicted small secreted protein [Function unknown];


:

Pssm-ID: 444261  Cd Length: 45  Bit Score: 49.46  E-value: 1.46e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 695766834  1 MNNAIKLLLVLsLSAILLTGCNTARGVGEDIQGLGHAISRAVS 43
Cdd:COG5510   1 MKKLILLLLLL-LLALLLAGCNTVKGAGEDIESGGEAIEDAAE 42
 
Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-43 1.46e-10

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 49.46  E-value: 1.46e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 695766834  1 MNNAIKLLLVLsLSAILLTGCNTARGVGEDIQGLGHAISRAVS 43
Cdd:COG5510   1 MKKLILLLLLL-LLALLLAGCNTVKGAGEDIESGGEAIEDAAE 42
PRK09810 PRK09810
lipoprotein antitoxin entericidin A;
6-43 3.88e-06

lipoprotein antitoxin entericidin A;


Pssm-ID: 137533  Cd Length: 41  Bit Score: 38.08  E-value: 3.88e-06
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 695766834  6 KLLLVLSLSAILLTGCNTARGVGEDIQGLGHAISRAVS 43
Cdd:PRK09810  4 RLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 23-41 1.29e-04

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 33.81  E-value: 1.29e-04
                         10
                 ....*....|....*....
gi 695766834  23 TARGVGEDIQGLGHAISRA 41
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDA 19
 
Name Accession Description Interval E-value
COG5510 COG5510
Predicted small secreted protein [Function unknown];
1-43 1.46e-10

Predicted small secreted protein [Function unknown];


Pssm-ID: 444261  Cd Length: 45  Bit Score: 49.46  E-value: 1.46e-10
                        10        20        30        40
                ....*....|....*....|....*....|....*....|...
gi 695766834  1 MNNAIKLLLVLsLSAILLTGCNTARGVGEDIQGLGHAISRAVS 43
Cdd:COG5510   1 MKKLILLLLLL-LLALLLAGCNTVKGAGEDIESGGEAIEDAAE 42
PRK09810 PRK09810
lipoprotein antitoxin entericidin A;
6-43 3.88e-06

lipoprotein antitoxin entericidin A;


Pssm-ID: 137533  Cd Length: 41  Bit Score: 38.08  E-value: 3.88e-06
                        10        20        30
                ....*....|....*....|....*....|....*...
gi 695766834  6 KLLLVLSLSAILLTGCNTARGVGEDIQGLGHAISRAVS 43
Cdd:PRK09810  4 RLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS 41
PRK10081 PRK10081
lipoprotein toxin entericidin B;
7-43 5.44e-05

lipoprotein toxin entericidin B;


Pssm-ID: 170240  Cd Length: 48  Bit Score: 35.44  E-value: 5.44e-05
                        10        20        30
                ....*....|....*....|....*....|....*..
gi 695766834  7 LLLVLSLSAiLLTGCNTARGVGEDIQGLGHAISRAVS 43
Cdd:PRK10081  9 IFSVLVLST-VLTACNTTRGVGEDISDGGNAISGAAT 44
Entericidin pfam08085
Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. ...
 23-41 1.29e-04

Entericidin EcnA/B family; This family consists of the entericidin antidote/toxin peptides. The entericidin locus is activated in stationary phase under high osmolarity conditions by rho-S and simultaneously repressed by the osmoregulatory EnvZ/OmpR signal transduction pathway. The entericidin locus encodes tandem paralogous genes (ecnAB) and directs the synthesis of two small cell-envelope lipoproteins which can maintain plasmids in bacterial population by means of post-segregational killing.


Pssm-ID: 429826  Cd Length: 20  Bit Score: 33.81  E-value: 1.29e-04
                         10
                 ....*....|....*....
gi 695766834  23 TARGVGEDIQGLGHAISRA 41
Cdd:pfam08085  1 TVEGAGQDIQAGGEAIEDA 19
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH