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Conserved domains on  [gi|696362952|ref|WP_032938094|]
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MULTISPECIES: fimbrial protein [Citrobacter]

Protein Classification

fimbrial protein( domain architecture ID 646)

fimbrial protein similar to the type-1 fimbrial major subunit FimA, which is transported to the outer membrane by the lipoprotein sorting system, and a mature or processed FimA protein on the outer membrane is autopolymerized to form Fim fimbriae

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Fimbrial super family cl01416
Fimbrial protein;
224-360 7.57e-03

Fimbrial protein;


The actual alignment was detected with superfamily member pfam00419:

Pssm-ID: 445401  Cd Length: 152  Bit Score: 36.64  E-value: 7.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696362952  224 SDKGTDTVEFGRISITEAKAGKDNSHSKQFaVIAAEAAGKHECRGINYAITFTGTTHNSGTVFTGQG---TPDIGVTLQD 300
Cdd:pfam00419  17 TAGTPIEVDFGQIPVNELNAGGEGSRQKPF-SITLECSSGSSAVKVTVGLFGTADASSPNLLLTGNGagaATGVGIRLYD 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 696362952  301 AarpgAGDIISGNRIDFTSGAFNNQSDSRRKEFMATLFWL-KNPPQPGAFsipvNATVTFK 360
Cdd:pfam00419  96 A----NGGALPPNNGTSSIPVSATAAVATGITFTASLVATtGGTPTAGDF----NATATIV 148
 
Name Accession Description Interval E-value
Fimbrial pfam00419
Fimbrial protein;
224-360 7.57e-03

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 36.64  E-value: 7.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696362952  224 SDKGTDTVEFGRISITEAKAGKDNSHSKQFaVIAAEAAGKHECRGINYAITFTGTTHNSGTVFTGQG---TPDIGVTLQD 300
Cdd:pfam00419  17 TAGTPIEVDFGQIPVNELNAGGEGSRQKPF-SITLECSSGSSAVKVTVGLFGTADASSPNLLLTGNGagaATGVGIRLYD 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 696362952  301 AarpgAGDIISGNRIDFTSGAFNNQSDSRRKEFMATLFWL-KNPPQPGAFsipvNATVTFK 360
Cdd:pfam00419  96 A----NGGALPPNNGTSSIPVSATAAVATGITFTASLVATtGGTPTAGDF----NATATIV 148
 
Name Accession Description Interval E-value
Fimbrial pfam00419
Fimbrial protein;
224-360 7.57e-03

Fimbrial protein;


Pssm-ID: 425671  Cd Length: 152  Bit Score: 36.64  E-value: 7.57e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696362952  224 SDKGTDTVEFGRISITEAKAGKDNSHSKQFaVIAAEAAGKHECRGINYAITFTGTTHNSGTVFTGQG---TPDIGVTLQD 300
Cdd:pfam00419  17 TAGTPIEVDFGQIPVNELNAGGEGSRQKPF-SITLECSSGSSAVKVTVGLFGTADASSPNLLLTGNGagaATGVGIRLYD 95

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 696362952  301 AarpgAGDIISGNRIDFTSGAFNNQSDSRRKEFMATLFWL-KNPPQPGAFsipvNATVTFK 360
Cdd:pfam00419  96 A----NGGALPPNNGTSSIPVSATAAVATGITFTASLVATtGGTPTAGDF----NATATIV 148
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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