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Conserved domains on  [gi|696367793|ref|WP_032942805|]
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MULTISPECIES: DNA-binding transcriptional repressor DeoR [Citrobacter]

Protein Classification

DNA-binding transcriptional repressor DeoR( domain architecture ID 11484870)

DNA-binding transcriptional repressor DeoR is one of the repressors that regulate the expression of deoCABD genes, which encode nucleotide and deoxy ribonucleotide catabolizing enzymes; also negatively regulates the expression of nupG (a transport protein) and tsx (a pore-forming protein)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


:

Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 555.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   1 METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLLGGYIVLEPRSANHYLISDQKSRLVDEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  81 RAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKPLDFQET 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 161 LNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDSRPDEAFV 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 696367793 241 EYAKAQRITLKY 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
 
Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 555.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   1 METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLLGGYIVLEPRSANHYLISDQKSRLVDEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  81 RAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKPLDFQET 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 161 LNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDSRPDEAFV 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 696367793 241 EYAKAQRITLKY 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 5-250 3.60e-67

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 208.07  E-value: 3.60e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   5 RDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLN----------NHdapvvllgGYIVLEPRSANHYLISDQKSR 74
Cdd:COG1349    3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAeleeqgllrrVH--------GGAVLVSSAAAEPPFAERETL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  75 LVDEKRRAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKP 154
Cdd:COG1349   75 NAEEKRAIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 155 LDFQETLNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDSR 234
Cdd:COG1349  155 PLAEEALRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAG 234

                        250
                 ....*....|....*.
gi 696367793 235 PDEAFVEYAKAQRITL 250
Cdd:COG1349  235 PPPELLEALEEAGVEV 250
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 76-233 1.36e-64

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 198.50  E-value: 1.36e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   76 VDEKRRAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKPL 155
Cdd:pfam00455   3 AEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGP 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 696367793  156 DFQETLNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDS 233
Cdd:pfam00455  83 LAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
8-57 1.14e-11

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 58.39  E-value: 1.14e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 696367793     8 RIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLL---GGYIV 57
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTrvhGGAVS 53
 
Name Accession Description Interval E-value
PRK10681 PRK10681
DNA-binding transcriptional repressor DeoR; Provisional
 1-252 0e+00

DNA-binding transcriptional repressor DeoR; Provisional


Pssm-ID: 182644 [Multi-domain]  Cd Length: 252  Bit Score: 555.08  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   1 METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLLGGYIVLEPRSANHYLISDQKSRLVDEKR 80
Cdd:PRK10681   1 METRRDERIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKR 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  81 RAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKPLDFQET 160
Cdd:PRK10681  81 RAAQLAATLVEPNQTLFFDCGTTTPWIIEAIDNELPFTAVCYSLNTFLALQEKPHCRAILCGGEFHASNAIFKPLDFQQT 160

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 161 LNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDSRPDEAFV 240
Cdd:PRK10681 161 LDNICPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMAMAQKHVLVVDHSKFGKVRPARMGDLTRFDTVVSDRCPDDEFV 240

                        250
                 ....*....|..
gi 696367793 241 EYAKAQRITLKY 252
Cdd:PRK10681 241 KYAQAQRIKLMY 252
GlpR COG1349
DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, ...
 5-250 3.60e-67

DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism];


Pssm-ID: 440960 [Multi-domain]  Cd Length: 254  Bit Score: 208.07  E-value: 3.60e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   5 RDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLN----------NHdapvvllgGYIVLEPRSANHYLISDQKSR 74
Cdd:COG1349    3 AEERRQKILELLRERGRVSVEELAERLGVSEETIRRDLAeleeqgllrrVH--------GGAVLVSSAAAEPPFAERETL 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  75 LVDEKRRAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKP 154
Cdd:COG1349   75 NAEEKRAIARAAASLIEDGDTIFLDAGTTTLALARALPDRRNLTVVTNSLNIANELAERPNIEVILLGGELRPSSGSLVG 154

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 155 LDFQETLNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDSR 234
Cdd:COG1349  155 PLAEEALRRFRADKAFLGASGIDAEGGLTTFDEEEAEVKRAMIEAARRVILLADSSKFGRRALARVAPLSEIDVLITDAG 234

                        250
                 ....*....|....*.
gi 696367793 235 PDEAFVEYAKAQRITL 250
Cdd:COG1349  235 PPPELLEALEEAGVEV 250
DeoRC pfam00455
DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive ...
 76-233 1.36e-64

DeoR C terminal sensor domain; The sensor domains of the DeoR are catalytically inactive versions of the ISOCOT fold, but retain the substrate binding site. DeorC senses diverse sugar derivatives such as deoxyribose nucleoside (DeoR), tagatose phosphate (LacR), galactosamine (AgaR), myo-inositol (Bacillus IolR) and L-ascorbate (UlaR). It can also bind L-ascorbate 6-phosphate, agrocinopines, sn-glycerol 3-phosphate, and sulfoquinovose (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).


Pssm-ID: 395365  Cd Length: 160  Bit Score: 198.50  E-value: 1.36e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   76 VDEKRRAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKPL 155
Cdd:pfam00455   3 AEEKRRIAKAAASLIEDGDTIFLDAGTTTLELARALPDRRNLTVITNSLNIANELSEKPDIEVILLGGEVRPKTGAFVGP 82

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 696367793  156 DFQETLNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDS 233
Cdd:pfam00455  83 LAEEFLRQFNVDKAFIGANGIDLEGGLTTSDEEEAEVKRAMIEAARRVILLADSSKFGKRAFARFAPLEDIDALITDK 160
PRK09802 PRK09802
DeoR family transcriptional regulator;
7-232 1.16e-18

DeoR family transcriptional regulator;


Pssm-ID: 182086 [Multi-domain]  Cd Length: 269  Bit Score: 82.60  E-value: 1.16e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   7 ERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDL---NNHDAPVVLLGGYIVLEPRSANHYLISDQKSRL-VDEKRRA 82
Cdd:PRK09802  17 ERREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLaflEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALnTAMKRSV 96

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  83 AQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIFKPLDFQETLN 162
Cdd:PRK09802  97 AKAAVELIQPGHRVILDSGTTTFEIARLMRKHTDVIAMTNGMNVANALLEAEGVELLMTGGHLRRQSQSFYGDQAEQSLQ 176

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 163 NLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISD 232
Cdd:PRK09802 177 NYHFDMLFLGVDAIDLERGVSTHNEDEARLNRRMCEVAERIIVVTDSSKFNRSSLHKIIDTQRIDMIIVD 246
PRK10906 PRK10906
DeoR/GlpR family transcriptional regulator;
2-235 8.57e-18

DeoR/GlpR family transcriptional regulator;


Pssm-ID: 182827 [Multi-domain]  Cd Length: 252  Bit Score: 79.90  E-value: 8.57e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   2 ETRRDERIGQLLqalKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLL---GGYIVlePRSANHYLISDQKSRLVDE 78
Cdd:PRK10906   3 QTQRHDAIIELV---KQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKILrhhGGAAL--PSSSVNTPWHDRKATQTEE 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  79 KRRAAQQAASLVQAHQTIFFDCGTTTPWIIEAIDNELPFTAICYSLNTFLVLQEKPQCRVILCGGEFHASNAIF---KPL 155
Cdd:PRK10906  78 KERIARKVASQIPNGATLFIDIGTTPEAVAHALLNHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIigeATL 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 156 DFqetLNNLCPDIAFYSAAGVHIEKGATCFNLEELPVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDTIISDSRP 235
Cdd:PRK10906 158 DF---ISQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVNMGSISMVDAVYTDQLP 234
srlR PRK10434
DNA-binding transcriptional repressor;
7-248 3.69e-15

DNA-binding transcriptional repressor;


Pssm-ID: 182457 [Multi-domain]  Cd Length: 256  Bit Score: 72.80  E-value: 3.69e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   7 ERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLN--NHDAPVVLLGGYIVLEPRSANHYLisDQKSRL-VDEKRRAA 83
Cdd:PRK10434   5 QRQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVilEHAGTVIRTYGGVVLNKEESDPPI--DHKTLInTHKKELIA 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  84 QQAASLVQAHQTIFFDCGTTT----PWIIEaIDNelpFTAICYSLNTF--LVLQEKPQcRVILCGGEFHASNAIFKPLDF 157
Cdd:PRK10434  83 EAAVSLIHDGDSIILDAGSTVlqmvPLLSR-FNN---ITVMTNSLHIVnaLSELDNEQ-TILMPGGTFRKKSASFHGQLA 157

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 158 QETLNNLCPDIAFYSAAGVHIEKGATCFNleelPVKHWAMSM---AQHHVLVVDHSKFGKVRPARMGELKRFDTIISDSR 234
Cdd:PRK10434 158 ENAFEHFTFDKLFIGTDGIDLNAGVTTFN----EVYTVSKAMcnaAREIILMADSSKFGRKSPNVVCSLEKVDKLITDAG 233

                        250
                 ....*....|....
gi 696367793 235 PDEAFVEYAKAQRI 248
Cdd:PRK10434 234 IDPAFRQALEEKGI 247
HTH_DeoR pfam08220
DeoR-like helix-turn-helix domain;
8-61 8.74e-14

DeoR-like helix-turn-helix domain;


Pssm-ID: 285436 [Multi-domain]  Cd Length: 57  Bit Score: 64.20  E-value: 8.74e-14
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 696367793    8 RIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLL---GGYIVLEPR 61
Cdd:pfam08220   1 RIQQILELLKQQGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTrthGGAVSNSST 57
HTH_DEOR smart00420
helix_turn_helix, Deoxyribose operon repressor;
8-57 1.14e-11

helix_turn_helix, Deoxyribose operon repressor;


Pssm-ID: 197714 [Multi-domain]  Cd Length: 53  Bit Score: 58.39  E-value: 1.14e-11
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|...
gi 696367793     8 RIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLL---GGYIV 57
Cdd:smart00420   1 RQQQILELLAQQGKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTrvhGGAVS 53
PRK13509 PRK13509
HTH-type transcriptional regulator UlaR;
8-246 3.72e-10

HTH-type transcriptional regulator UlaR;


Pssm-ID: 184100 [Multi-domain]  Cd Length: 251  Bit Score: 58.48  E-value: 3.72e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   8 RIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLL----GGYIVLEPRSANHYLISDQKSRLvDEKRRAA 83
Cdd:PRK13509   6 RHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLKkvrnGAEAITQQRPRWTPMNIHQAQNH-DEKVRIA 84

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  84 QQAASLVQAHQTIFFDCGTTTPWI--------IEAIDNELPftaicysLNTFLVLQEKPqcRVILCGGEFHASNAIFkpL 155
Cdd:PRK13509  85 KAASQLCNPGESVVINCGSTAFLLgrelcgkpVQIITNYLP-------LANYLIDQEHD--SVIIMGGQYNKSQSIT--L 153

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 156 DFQETLNNL-CPDIAFYS-----AAGVHIEKGATCFNLEELpvkhwaMSMAQHHVLVVDHSKFGKvrpaRMG----ELKR 225
Cdd:PRK13509 154 SPQGSENSLyAGHWMFTSgkgltADGLYKTDMLTAMAEQKM------LSVVGKLVVLVDSSKIGE----RAGmlfsRADQ 223

                        250       260
                 ....*....|....*....|.
gi 696367793 226 FDTIISDSRPDEAFVEYAKAQ 246
Cdd:PRK13509 224 IDMLITGKNADPEVLQQLEAQ 244
PRK10411 PRK10411
L-fucose operon activator;
1-235 1.86e-06

L-fucose operon activator;


Pssm-ID: 236684 [Multi-domain]  Cd Length: 240  Bit Score: 47.49  E-value: 1.86e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793   1 METRRDERIGQLLQalkRSDKLHLKEAATLLGVSEMTIRRDLNNHDAPVVLL-----GGYIVLEPRSANHYLISDQKSRL 75
Cdd:PRK10411   1 MKAARQQAIVDLLL---NHTSLTTEALAEQLNVSKETIRRDLNELQTQGKILrnhgrAKYIHRQNQDSGDPFHIRLKSHY 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793  76 VDeKRRAAQQAASLVQAHQTIFFDcGTTTPWIIEaidNELPFTAICYSLNTFLVLQE---KPQCRVILCGGEFHASNAIF 152
Cdd:PRK10411  78 AH-KADIAREALAWIEEGMVIALD-ASSTCWYLA---RQLPDINIQVFTNSHPICQElgkRERIQLISSGGTLERKYGCY 152

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 696367793 153 KPLDFQETLNNLCPDIAFYSAAGVHiEKGA----TCFNLEelpVKHWAMSMAQHHVLVVDHSKFGKVRPARMGELKRFDT 228
Cdd:PRK10411 153 VNPSLISQLKSLEIDLFIFSCEGID-SSGAlwdsNAINAD---YKSMLLKRAAQSLLLIDKSKFNRSGEARIGHLDEVTH 228


                 ....*..
gi 696367793 229 IISDSRP 235
Cdd:PRK10411 229 IISDERQ 235
YobV COG2378
Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains ...
 3-43 3.38e-03

Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription];


Pssm-ID: 441945 [Multi-domain]  Cd Length: 314  Bit Score: 38.14  E-value: 3.38e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|.
gi 696367793   3 TRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLN 43
Cdd:COG2378    1 MSRLERLLALLQLLQSRRGVTAAELAERLEVSERTIYRDID 41
COG3177 COG3177
Fic family protein [Transcription];
1-43 9.15e-03

Fic family protein [Transcription];


Pssm-ID: 442410 [Multi-domain]  Cd Length: 316  Bit Score: 36.59  E-value: 9.15e-03
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|...
gi 696367793   1 METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLN 43
Cdd:COG3177  255 ARGRLNERQRKLLELLFENPVLTASELAELLGVSRRTARRDLK 297
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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