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Conserved domains on  [gi|697052507|ref|WP_033145113|]
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MULTISPECIES: YcbX family protein [Enterobacter]

Protein Classification

YcbX family protein( domain architecture ID 11461389)

YcbX family protein contains MOSC and Fe-S domains, similar to Escherichia coli 6-N-hydroxylaminopurine resistance protein YcbX

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YcbX COG3217
N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and ...
 1-265 3.93e-108

N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms];


:

Pssm-ID: 442450 [Multi-domain]  Cd Length: 240  Bit Score: 316.36  E-value: 3.93e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507   1 MATLSRLFIHPVKSMRGIGVSHALADMSGFAFDRIFMVTEPDGTFITARQFPQMVRFTPSPLHDG-LHLTAPDGSSAVIR 79
Cdd:COG3217    1 MGRVSRLYRYPVKSLAGEALESATLTAGGLPGDRRWALVDADGRFLTQRRHPRLALLRARLDEDGgLTLTAPGGESLTVD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507  80 FADfapvdaptevwgnhftarIAPDEINRWLSGFFSRDVQLRWVGPEPTRrvkrhdAVPLSFADGFPFLLTNEASLRDLQ 159
Cdd:COG3217   81 LDD------------------DAGDAAAAWLSEYLGRPVRLVRLPPESRR------GPPVGFADGYPVLLISTASLADLN 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 160 GRCKASVQMEQFRPNLVVTGADAWEEDTW--KVIRIGSVIFDVVKPCSRCIFTTVSPEKGQKHPsgEPLKTLQSFRtaQD 237
Cdd:COG3217  137 ARLGAPVDMRRFRPNLVVDGLEPFAEDDWvgRRLRIGEVRLRVVKPCSRCVVTTVDPETGERDP--EPLRTLARYR--GA 212

                        250       260
                 ....*....|....*....|....*...
gi 697052507 238 NGDVDFGQNLIPRSSGAIRVGDEVEILA 265
Cdd:COG3217  213 DGHVDFGVNAIVLEGGTIRVGDEVEVLE 240
Fdx COG0633
Ferredoxin [Energy production and conversion];
289-369 2.18e-17

Ferredoxin [Energy production and conversion];


:

Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 76.04  E-value: 2.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 289 SAVDIHWQGNVIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIG----NDGTILCCSCIPKTS 364
Cdd:COG0633    2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSdeerAAGSRLACQARPTSD 81


                 ....*
gi 697052507 365 VQLEA 369
Cdd:COG0633   82 LVVEL 86
 
Name Accession Description Interval E-value
YcbX COG3217
N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and ...
 1-265 3.93e-108

N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms];


Pssm-ID: 442450 [Multi-domain]  Cd Length: 240  Bit Score: 316.36  E-value: 3.93e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507   1 MATLSRLFIHPVKSMRGIGVSHALADMSGFAFDRIFMVTEPDGTFITARQFPQMVRFTPSPLHDG-LHLTAPDGSSAVIR 79
Cdd:COG3217    1 MGRVSRLYRYPVKSLAGEALESATLTAGGLPGDRRWALVDADGRFLTQRRHPRLALLRARLDEDGgLTLTAPGGESLTVD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507  80 FADfapvdaptevwgnhftarIAPDEINRWLSGFFSRDVQLRWVGPEPTRrvkrhdAVPLSFADGFPFLLTNEASLRDLQ 159
Cdd:COG3217   81 LDD------------------DAGDAAAAWLSEYLGRPVRLVRLPPESRR------GPPVGFADGYPVLLISTASLADLN 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 160 GRCKASVQMEQFRPNLVVTGADAWEEDTW--KVIRIGSVIFDVVKPCSRCIFTTVSPEKGQKHPsgEPLKTLQSFRtaQD 237
Cdd:COG3217  137 ARLGAPVDMRRFRPNLVVDGLEPFAEDDWvgRRLRIGEVRLRVVKPCSRCVVTTVDPETGERDP--EPLRTLARYR--GA 212

                        250       260
                 ....*....|....*....|....*...
gi 697052507 238 NGDVDFGQNLIPRSSGAIRVGDEVEILA 265
Cdd:COG3217  213 DGHVDFGVNAIVLEGGTIRVGDEVEVLE 240
MOSC_N pfam03476
MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The ...
 1-117 5.89e-45

MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.


Pssm-ID: 281474  Cd Length: 118  Bit Score: 150.59  E-value: 5.89e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507    1 MATLSRLFIHPVKSMRGIGVSHALADMSGFAFDRIFMVTEPDGTFITARQFPQMVRFTPSPL-HDGLHLTAPDGSSAVIR 79
Cdd:pfam03476   1 MARVSSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVVDSDGKFVTARREPRLVLIRTTLDeDGGLTLTAPGMPDLSVP 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 697052507   80 FADFAPVDAPTEVWGNHFTARIAPDEINRWLSGFFSRD 117
Cdd:pfam03476  81 LADNKFDLRGVLVWGLSFSGRDCGDAAADWFSDFLGKP 118
PLN02724 PLN02724
Molybdenum cofactor sulfurase
 4-261 1.15e-32

Molybdenum cofactor sulfurase


Pssm-ID: 215384 [Multi-domain]  Cd Length: 805  Bit Score: 129.22  E-value: 1.15e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507   4 LSRLFIHPVKSMRGIGVSHALADMSGFAFDRIFMVTEPDGTFITARQFPQMVRFTPS-PLHDG-LHLTAPDGSSAV-IRF 80
Cdd:PLN02724 520 LKSITVYPIKSCAGFSVERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFiDLESGkLVVRAPRCDHKLeIPL 599

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507  81 AD--FAPVDAPTEVWGNHFTARIAPDEINRWLSGFFSRDVQL-----------RWVGPEPTRrvKRHDAVPLSFADGFPF 147
Cdd:PLN02724 600 ESdsQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLvrksssntrvcRNRNPSHSP--CGDDESRLSFANEGQF 677

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 148 LLTNEASLRDLQGRCK-----ASVQME--QFRPNLVVTGADAWEEDTWKVIRIGSVIFDVVKPCSRCIFTTVSPEKGQKH 220
Cdd:PLN02724 678 LLISEASVEDLNRRLAtgqedAKIRLDptRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNRCQMINIDQETGLVN 757

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 697052507 221 PSGEPLKTLQSFRTAQdnGDVDFG----QNLIPRSSGAIRVGDEV 261
Cdd:PLN02724 758 PSNEPLATLASYRRVK--GKILFGillrYEISDKRDQWIAVGSRV 800
Fdx COG0633
Ferredoxin [Energy production and conversion];
289-369 2.18e-17

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 76.04  E-value: 2.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 289 SAVDIHWQGNVIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIG----NDGTILCCSCIPKTS 364
Cdd:COG0633    2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSdeerAAGSRLACQARPTSD 81


                 ....*
gi 697052507 365 VQLEA 369
Cdd:COG0633   82 LVVEL 86
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
308-368 3.02e-14

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 67.45  E-value: 3.02e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 697052507 308 LLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKS-AIGNDGTILCCSCIPKTSVQLE 368
Cdd:PRK10713  22 LLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPlAFIQPGEILPCCCRAKGDIEIE 83
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 291-368 3.47e-14

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 67.42  E-value: 3.47e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 291 VDIHWQGNVIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIGND----GTILCCSCIPKTSVQ 366
Cdd:cd00207    3 INVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEeaegGYVLACQTRVTDGLV 82


                 ..
gi 697052507 367 LE 368
Cdd:cd00207   83 IE 84
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
304-362 6.45e-12

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 60.62  E-value: 6.45e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697052507  304 NQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEV----SALKKSAIGNDGTILCCSCIPK 362
Cdd:pfam00111  15 GETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDqsdqSFLEDDELAAGYVVLACQTYPK 77
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 298-368 9.26e-09

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 52.46  E-value: 9.26e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697052507  298 NVIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIGND----GTILCCSCIPKTSVQLE 368
Cdd:TIGR02008  15 ETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDqmeaGYVLTCVAYPTSDCTIE 89
 
Name Accession Description Interval E-value
YcbX COG3217
N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and ...
 1-265 3.93e-108

N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms];


Pssm-ID: 442450 [Multi-domain]  Cd Length: 240  Bit Score: 316.36  E-value: 3.93e-108
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507   1 MATLSRLFIHPVKSMRGIGVSHALADMSGFAFDRIFMVTEPDGTFITARQFPQMVRFTPSPLHDG-LHLTAPDGSSAVIR 79
Cdd:COG3217    1 MGRVSRLYRYPVKSLAGEALESATLTAGGLPGDRRWALVDADGRFLTQRRHPRLALLRARLDEDGgLTLTAPGGESLTVD 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507  80 FADfapvdaptevwgnhftarIAPDEINRWLSGFFSRDVQLRWVGPEPTRrvkrhdAVPLSFADGFPFLLTNEASLRDLQ 159
Cdd:COG3217   81 LDD------------------DAGDAAAAWLSEYLGRPVRLVRLPPESRR------GPPVGFADGYPVLLISTASLADLN 136

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 160 GRCKASVQMEQFRPNLVVTGADAWEEDTW--KVIRIGSVIFDVVKPCSRCIFTTVSPEKGQKHPsgEPLKTLQSFRtaQD 237
Cdd:COG3217  137 ARLGAPVDMRRFRPNLVVDGLEPFAEDDWvgRRLRIGEVRLRVVKPCSRCVVTTVDPETGERDP--EPLRTLARYR--GA 212

                        250       260
                 ....*....|....*....|....*...
gi 697052507 238 NGDVDFGQNLIPRSSGAIRVGDEVEILA 265
Cdd:COG3217  213 DGHVDFGVNAIVLEGGTIRVGDEVEVLE 240
MOSC_N pfam03476
MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The ...
 1-117 5.89e-45

MOSC N-terminal beta barrel domain; This domain is found to the N-terminus of pfam03473. The function of this domain is unknown, however it is predicted to adopt a beta barrel fold.


Pssm-ID: 281474  Cd Length: 118  Bit Score: 150.59  E-value: 5.89e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507    1 MATLSRLFIHPVKSMRGIGVSHALADMSGFAFDRIFMVTEPDGTFITARQFPQMVRFTPSPL-HDGLHLTAPDGSSAVIR 79
Cdd:pfam03476   1 MARVSSLYVYPIKSCRGESLSRAELTAAGLAWDRRFMVVDSDGKFVTARREPRLVLIRTTLDeDGGLTLTAPGMPDLSVP 80

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 697052507   80 FADFAPVDAPTEVWGNHFTARIAPDEINRWLSGFFSRD 117
Cdd:pfam03476  81 LADNKFDLRGVLVWGLSFSGRDCGDAAADWFSDFLGKP 118
PLN02724 PLN02724
Molybdenum cofactor sulfurase
 4-261 1.15e-32

Molybdenum cofactor sulfurase


Pssm-ID: 215384 [Multi-domain]  Cd Length: 805  Bit Score: 129.22  E-value: 1.15e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507   4 LSRLFIHPVKSMRGIGVSHALADMSGFAFDRIFMVTEPDGTFITARQFPQMVRFTPS-PLHDG-LHLTAPDGSSAV-IRF 80
Cdd:PLN02724 520 LKSITVYPIKSCAGFSVERWPLSETGLLYDREWMIQSLTGEILTQKKVPEMCLITTFiDLESGkLVVRAPRCDHKLeIPL 599

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507  81 AD--FAPVDAPTEVWGNHFTARIAPDEINRWLSGFFSRDVQL-----------RWVGPEPTRrvKRHDAVPLSFADGFPF 147
Cdd:PLN02724 600 ESdsQHEESGEVILCGNRAESMSYGTEINEWFTNALGRRCTLvrksssntrvcRNRNPSHSP--CGDDESRLSFANEGQF 677

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 148 LLTNEASLRDLQGRCK-----ASVQME--QFRPNLVVTGADAWEEDTWKVIRIGSVIFDVVKPCSRCIFTTVSPEKGQKH 220
Cdd:PLN02724 678 LLISEASVEDLNRRLAtgqedAKIRLDptRFRPNLVVSGGEAYAEDEWQSLSIGDAEFTVLGGCNRCQMINIDQETGLVN 757

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*
gi 697052507 221 PSGEPLKTLQSFRTAQdnGDVDFG----QNLIPRSSGAIRVGDEV 261
Cdd:PLN02724 758 PSNEPLATLASYRRVK--GKILFGillrYEISDKRDQWIAVGSRV 800
Fdx COG0633
Ferredoxin [Energy production and conversion];
289-369 2.18e-17

Ferredoxin [Energy production and conversion];


Pssm-ID: 440398 [Multi-domain]  Cd Length: 87  Bit Score: 76.04  E-value: 2.18e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 289 SAVDIHWQGNVIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIG----NDGTILCCSCIPKTS 364
Cdd:COG0633    2 PKVTFIPEGHTVEVPAGESLLEAALRAGIDLPYSCRSGACGTCHVRVLEGEVDHREEDALSdeerAAGSRLACQARPTSD 81


                 ....*
gi 697052507 365 VQLEA 369
Cdd:COG0633   82 LVVEL 86
MOSC pfam03473
MOSC domain; The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich ...
 138-262 1.66e-14

MOSC domain; The MOSC (MOCO sulfurase C-terminal) domain is a superfamily of beta-strand-rich domains identified in the molybdenum cofactor sulfurase and several other proteins from both prokaryotes and eukaryotes. These MOSC domains contain an absolutely conserved cysteine and occur either as stand-alone forms such as Swiss:P32157, or fused to other domains such as NifS-like catalytic domain in Molybdenum cofactor sulfurase. The MOSC domain is predicted to be a sulfur-carrier domain that receives sulfur abstracted by the pyridoxal phosphate-dependent NifS-like enzymes, on its conserved cysteine, and delivers it for the formation of diverse sulfur-metal clusters.


Pssm-ID: 460936  Cd Length: 116  Bit Score: 69.15  E-value: 1.66e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507  138 PLSFADGFPFLLTNEASLRDLQGR-CKASVQMEQFRPNLVVTGADaweedtWKVIRIGSViFDVVKPCSRcifTTVSPek 216
Cdd:pfam03473   3 KHHGGDDKAVLLYSRESYDAWNAElGRGPLDPGRFRENLVVSGGT------WKEVCIGDR-FRIGGACLR---LEVTQ-- 70

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 697052507  217 gqkhpSGEPLKTLQSfRTAQDNGD------VDFGQNLIPRSSGAIRVGDEVE 262
Cdd:pfam03473  71 -----PREPCKTLAK-RFGERRVDkrfkgsGRFGWYLRVLEEGTVRVGDEVE 116
PRK10713 PRK10713
2Fe-2S ferredoxin-like protein;
308-368 3.02e-14

2Fe-2S ferredoxin-like protein;


Pssm-ID: 182668 [Multi-domain]  Cd Length: 84  Bit Score: 67.45  E-value: 3.02e-14
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 697052507 308 LLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKS-AIGNDGTILCCSCIPKTSVQLE 368
Cdd:PRK10713  22 LLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPlAFIQPGEILPCCCRAKGDIEIE 83
fer2 cd00207
2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in ...
 291-368 3.47e-14

2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.


Pssm-ID: 238126 [Multi-domain]  Cd Length: 84  Bit Score: 67.42  E-value: 3.47e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 291 VDIHWQGNVIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIGND----GTILCCSCIPKTSVQ 366
Cdd:cd00207    3 INVPGSGVEVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEeaegGYVLACQTRVTDGLV 82


                 ..
gi 697052507 367 LE 368
Cdd:cd00207   83 IE 84
Fer2 pfam00111
2Fe-2S iron-sulfur cluster binding domain;
304-362 6.45e-12

2Fe-2S iron-sulfur cluster binding domain;


Pssm-ID: 395061 [Multi-domain]  Cd Length: 77  Bit Score: 60.62  E-value: 6.45e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 697052507  304 NQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEV----SALKKSAIGNDGTILCCSCIPK 362
Cdd:pfam00111  15 GETTLLDAAEEAGIDIPYSCRGGGCGTCAVKVLEGEDqsdqSFLEDDELAAGYVVLACQTYPK 77
petF CHL00134
ferredoxin; Validated
 299-363 2.63e-09

ferredoxin; Validated


Pssm-ID: 177056 [Multi-domain]  Cd Length: 99  Bit Score: 53.96  E-value: 2.63e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 697052507 299 VIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEV-----SALKKSAIGnDGTILCCSCIPKT 363
Cdd:CHL00134  18 TIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVdqsdqSFLDDDQLE-AGFVLTCVAYPTS 86
PTZ00038 PTZ00038
ferredoxin; Provisional
 299-368 2.75e-09

ferredoxin; Provisional


Pssm-ID: 240237 [Multi-domain]  Cd Length: 191  Bit Score: 56.38  E-value: 2.75e-09
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 697052507 299 VIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIGND----GTILCCSCIPKTSVQLE 368
Cdd:PTZ00038 108 VIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEqlkkGYCLLCTCYPKSDCTIE 181
fdx_plant TIGR02008
ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ...
 298-368 9.26e-09

ferredoxin [2Fe-2S]; This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.


Pssm-ID: 273926 [Multi-domain]  Cd Length: 97  Bit Score: 52.46  E-value: 9.26e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697052507  298 NVIRGNNQQVLLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIGND----GTILCCSCIPKTSVQLE 368
Cdd:TIGR02008  15 ETIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDqmeaGYVLTCVAYPTSDCTIE 89
PRK10684 PRK10684
HCP oxidoreductase, NADH-dependent; Provisional
 308-368 3.47e-08

HCP oxidoreductase, NADH-dependent; Provisional


Pssm-ID: 236735 [Multi-domain]  Cd Length: 332  Bit Score: 54.33  E-value: 3.47e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 697052507 308 LLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSA-----LKKSAIGnDGTILCCSCIPKTSVQLE 368
Cdd:PRK10684 268 LLEALESNKVPVVAACRAGVCGCCKTKVVSGEYTVsstmtLTPAEIA-QGYVLACSCHPQGDLVLA 332
PLN03136 PLN03136
Ferredoxin; Provisional
 308-368 2.16e-07

Ferredoxin; Provisional


Pssm-ID: 178681 [Multi-domain]  Cd Length: 148  Bit Score: 49.75  E-value: 2.16e-07
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 697052507 308 LLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIGN----DGTILCCSCIPKTSVQLE 368
Cdd:PLN03136  76 VLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDeqisEGYVLTCVAYPTSDVVIE 140
PRK05713 PRK05713
iron-sulfur-binding ferredoxin reductase;
308-359 2.32e-07

iron-sulfur-binding ferredoxin reductase;


Pssm-ID: 235575 [Multi-domain]  Cd Length: 312  Bit Score: 52.04  E-value: 2.32e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 697052507 308 LLEQLEQAGIRVPYSCRAGICGCCRIRLVDGEVSALKKSAIGND----GTILCCSC 359
Cdd:PRK05713  19 LLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEkreqGWRLACQC 74
PRK07609 PRK07609
CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
 315-369 2.29e-06

CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated


Pssm-ID: 181058 [Multi-domain]  Cd Length: 339  Bit Score: 48.71  E-value: 2.29e-06
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 697052507 315 AGIRVPYSCRAGICGCCRIRLVDGEVS--ALKKSAIGND----GTILCCSCIPKTSVQLEA 369
Cdd:PRK07609  29 QGIHLPYGCKNGACGSCKGRLLEGEVEqgPHQASALSGEeraaGEALTCCAKPLSDLVLEA 89
COG3894 COG3894
Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain ...
 308-368 1.70e-04

Uncharacterized 2Fe-2S and 4Fe-4S clusters-containing protein, contains DUF4445 domain [Function unknown];


Pssm-ID: 443101 [Multi-domain]  Cd Length: 621  Bit Score: 43.64  E-value: 1.70e-04
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 697052507 308 LLEQLEQAGIRVPYSCR-AGICGCCRIRLVDGEVSALKKSAIG-------NDGTILCCSCIPKTSVQLE 368
Cdd:COG3894   23 LLDAAREAGVDIDAPCGgRGTCGKCKVKVEEGEFSPVTEEERRllspeelAEGYRLACQARVLGDLVVE 91
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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