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Conserved domains on  [gi|705439756|ref|WP_033513632|]
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MULTISPECIES: glycoside hydrolase N-terminal domain-containing protein [Bifidobacterium]

Protein Classification

glycoside hydrolase family 95 protein( domain architecture ID 231637)

glycoside hydrolase family 95 protein such as alpha-L-fucosidase, which hydrolyzes alpha-1,2-linked fucose and is involved in the degradation of fucosylated xyloglucans

CATH:  1.50.10.10|2.60.40.1180
CAZY:  GH95
EC:  3.2.1.-
Gene Ontology:  GO:0016798

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Glyco_hyd_65N_2 super family cl22392
Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the ...
 10-105 6.40e-20

Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.


The actual alignment was detected with superfamily member pfam14498:

Pssm-ID: 405224  Cd Length: 233  Bit Score: 80.76  E-value: 6.40e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705439756   10 SHWEEGIPLGNGRMGAVLCSEPETDVLYLNDDTLWSGYPHEETAALTPKIVTADRQAVFRDDYAAATRIIGETTLQErdE 89
Cdd:pfam14498   8 TNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPEIRALLFAGDYAEAERLAGKMMGGG--Q 85

                          90
                  ....*....|....*.
gi 705439756   90 QMFEPFGTARIHYSAP 105
Cdd:pfam14498  86 GSYQPLGDLTIDSGNE 101
 
Name Accession Description Interval E-value
Glyco_hyd_65N_2 pfam14498
Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the ...
 10-105 6.40e-20

Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.


Pssm-ID: 405224  Cd Length: 233  Bit Score: 80.76  E-value: 6.40e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705439756   10 SHWEEGIPLGNGRMGAVLCSEPETDVLYLNDDTLWSGYPHEETAALTPKIVTADRQAVFRDDYAAATRIIGETTLQErdE 89
Cdd:pfam14498   8 TNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPEIRALLFAGDYAEAERLAGKMMGGG--Q 85

                          90
                  ....*....|....*.
gi 705439756   90 QMFEPFGTARIHYSAP 105
Cdd:pfam14498  86 GSYQPLGDLTIDSGNE 101
 
Name Accession Description Interval E-value
Glyco_hyd_65N_2 pfam14498
Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the ...
 10-105 6.40e-20

Glycosyl hydrolase family 65, N-terminal domain; This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.


Pssm-ID: 405224  Cd Length: 233  Bit Score: 80.76  E-value: 6.40e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 705439756   10 SHWEEGIPLGNGRMGAVLCSEPETDVLYLNDDTLWSGYPHEETAALTPKIVTADRQAVFRDDYAAATRIIGETTLQErdE 89
Cdd:pfam14498   8 TNWTEALPLGNGRLGAMVFGGVAKERIQLNEDSLWSGGPRDNNNYGAAGALPEIRALLFAGDYAEAERLAGKMMGGG--Q 85

                          90
                  ....*....|....*.
gi 705439756   90 QMFEPFGTARIHYSAP 105
Cdd:pfam14498  86 GSYQPLGDLTIDSGNE 101
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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