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Conserved domains on  [gi|727097658|ref|WP_033614200|]
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ribbon-helix-helix domain-containing protein [Helicobacter pylori]

Protein Classification

ribbon-helix-helix domain-containing protein( domain architecture ID 11245549)

ribbon-helix-helix (RHH) domain-containing protein belongs to the RHH superfamily of of transcriptional regulators that bind to specific DNA sequences with high affinity and usually act as repressors

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RHH_7 pfam16777
Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family ...
 1-73 1.09e-25

Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family expressed by Helicobacter species. These proteins bind to specific DNA sequences with high affinity and usually act as repressors. Many are putatively named CopG.


:

Pssm-ID: 435578  Cd Length: 73  Bit Score: 89.86  E-value: 1.09e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727097658   1 MGNDKNTDETHLRATKNKLGRKPKTDANKKTRAVSLYFSDEQYHKLEQMANEEEESVGSYIKRYILKALRKIE 73
Cdd:pfam16777  1 MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSFYFSDDEHDKLEKLADEEEESVGSFIKRHILKAIIKIE 73
 
Name Accession Description Interval E-value
RHH_7 pfam16777
Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family ...
 1-73 1.09e-25

Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family expressed by Helicobacter species. These proteins bind to specific DNA sequences with high affinity and usually act as repressors. Many are putatively named CopG.


Pssm-ID: 435578  Cd Length: 73  Bit Score: 89.86  E-value: 1.09e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727097658   1 MGNDKNTDETHLRATKNKLGRKPKTDANKKTRAVSLYFSDEQYHKLEQMANEEEESVGSYIKRYILKALRKIE 73
Cdd:pfam16777  1 MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSFYFSDDEHDKLEKLADEEEESVGSFIKRHILKAIIKIE 73
 
Name Accession Description Interval E-value
RHH_7 pfam16777
Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family ...
 1-73 1.09e-25

Transcriptional regulator, RHH-like, CopG; RHH_7 is a ribbon-helix-helix protein family expressed by Helicobacter species. These proteins bind to specific DNA sequences with high affinity and usually act as repressors. Many are putatively named CopG.


Pssm-ID: 435578  Cd Length: 73  Bit Score: 89.86  E-value: 1.09e-25
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727097658   1 MGNDKNTDETHLRATKNKLGRKPKTDANKKTRAVSLYFSDEQYHKLEQMANEEEESVGSYIKRYILKALRKIE 73
Cdd:pfam16777  1 MEKTENTDETRLRGTKNKLGRKPKADANKKTRAVSFYFSDDEHDKLEKLADEEEESVGSFIKRHILKAIIKIE 73
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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