NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|727164249|ref|WP_033635672|]
View 

MULTISPECIES: MbeD/MobD family mobilization/exclusion protein [Serratia]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
MbeD_MobD super family cl46873
MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the ...
 3-59 8.53e-05

MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmids mobilization and transfer in the presence of conjugative plasmids.


The actual alignment was detected with superfamily member NF033829:

Pssm-ID: 481213  Cd Length: 69  Bit Score: 37.87  E-value: 8.53e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 727164249   3 MRELEIQFQNAMNELQSSFERQHREWQQSYQALQQLLEEAKQREAALRAQNEQLARK 59
Cdd:NF033829   1 MTELEKQLLSALEQLQQDYEQRLQEWESAFAELQKMFEVTQQENAALDERVQQLSQQ 57
 
Name Accession Description Interval E-value
plas_excl_MbeD NF033829
MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was ...
 3-59 8.53e-05

MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was originally described as a plasmid mobilization protein. Later, it was shown that MbeD additionally was responsible for a plasmid entry exclusion phenotype that had previously been ascribed to products of the exc1 and exc2 genes.


Pssm-ID: 411400  Cd Length: 69  Bit Score: 37.87  E-value: 8.53e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 727164249   3 MRELEIQFQNAMNELQSSFERQHREWQQSYQALQQLLEEAKQREAALRAQNEQLARK 59
Cdd:NF033829   1 MTELEKQLLSALEQLQQDYEQRLQEWESAFAELQKMFEVTQQENAALDERVQQLSQQ 57
MbeD_MobD pfam04899
MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the ...
 3-64 4.20e-04

MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmids mobilization and transfer in the presence of conjugative plasmids.


Pssm-ID: 113664  Cd Length: 70  Bit Score: 36.00  E-value: 4.20e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727164249    3 MRELEIQFQNAMNELQSSFERQHREWQQSYQALQQLLEEAKQREAALRAQNEQLARKLSTAS 64
Cdd:pfam04899   1 MTELETQLLSALEQLQQDYEQRLQEWESAFAELQRMFGLTQRENAALSEQVTGLSQQVQSLS 62
 
Name Accession Description Interval E-value
plas_excl_MbeD NF033829
MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was ...
 3-59 8.53e-05

MbeD family mobilization/exclusion protein; MbeD, as found in the ColE1 plasmid, was originally described as a plasmid mobilization protein. Later, it was shown that MbeD additionally was responsible for a plasmid entry exclusion phenotype that had previously been ascribed to products of the exc1 and exc2 genes.


Pssm-ID: 411400  Cd Length: 69  Bit Score: 37.87  E-value: 8.53e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 727164249   3 MRELEIQFQNAMNELQSSFERQHREWQQSYQALQQLLEEAKQREAALRAQNEQLARK 59
Cdd:NF033829   1 MTELEKQLLSALEQLQQDYEQRLQEWESAFAELQKMFEVTQQENAALDERVQQLSQQ 57
MbeD_MobD pfam04899
MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the ...
 3-64 4.20e-04

MbeD/MobD like; The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmids mobilization and transfer in the presence of conjugative plasmids.


Pssm-ID: 113664  Cd Length: 70  Bit Score: 36.00  E-value: 4.20e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727164249    3 MRELEIQFQNAMNELQSSFERQHREWQQSYQALQQLLEEAKQREAALRAQNEQLARKLSTAS 64
Cdd:pfam04899   1 MTELETQLLSALEQLQQDYEQRLQEWESAFAELQRMFGLTQRENAALSEQVTGLSQQVQSLS 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH