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Conserved domains on  [gi|727164860|ref|WP_033635944|]
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MULTISPECIES: YggT family protein [Serratia]

Protein Classification

YggT family protein( domain architecture ID 10492032)

YggT family protein similar to Escherichia coli membrane protein YggT

PubMed:  19966467

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 96-178 3.14e-19

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


:

Pssm-ID: 440525  Cd Length: 84  Bit Score: 77.47  E-value: 3.14e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727164860  96 LFGLISLVKSAGYLIFWVMIIRALMSWISQ-GRSPIDYVMYQLTEPLMAPIRRIIPAMGGIDFSAMVVILILYLINYLGM 174
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                 ....
gi 727164860 175 DLFG 178
Cdd:COG0762   81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 10-62 3.00e-09

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


:

Pssm-ID: 460533  Cd Length: 71  Bit Score: 51.33  E-value: 3.00e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 727164860   10 TVIDLYVMVLLLRIWMQW-TRTDFYNPFSQFVVKITQPVVGPLRRIIPSLGPID 62
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLD 55
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 96-178 3.14e-19

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 77.47  E-value: 3.14e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727164860  96 LFGLISLVKSAGYLIFWVMIIRALMSWISQ-GRSPIDYVMYQLTEPLMAPIRRIIPAMGGIDFSAMVVILILYLINYLGM 174
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                 ....
gi 727164860 175 DLFG 178
Cdd:COG0762   81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 108-172 7.78e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 57.88  E-value: 7.78e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727164860  108 YLIFWVMIIRALMSWISQG--RSPIDYVMYQLTEPLMAPIRRIIPAMGGIDFSAMVVILILYLINYL 172
Cdd:pfam02325   5 SLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 10-62 3.00e-09

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 51.33  E-value: 3.00e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 727164860   10 TVIDLYVMVLLLRIWMQW-TRTDFYNPFSQFVVKITQPVVGPLRRIIPSLGPID 62
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLD 55
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-62 9.89e-09

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 50.12  E-value: 9.89e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727164860   1 MLTLTFLVKTVIDLYVMVLLLRIWMQWTRTDFYNPFSQFVVKITQPVVGPLRRIIPSLGPID 62
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGID 62
 
Name Accession Description Interval E-value
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 96-178 3.14e-19

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 77.47  E-value: 3.14e-19
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727164860  96 LFGLISLVKSAGYLIFWVMIIRALMSWISQ-GRSPIDYVMYQLTEPLMAPIRRIIPAMGGIDFSAMVVILILYLINYLGM 174
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPfGYNPIGRFLYQLTEPLLRPIRRIIPPLGGIDLSPIVAILILQLLQRLLL 80


                 ....
gi 727164860 175 DLFG 178
Cdd:COG0762   81 GLLA 84
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 108-172 7.78e-12

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 57.88  E-value: 7.78e-12
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727164860  108 YLIFWVMIIRALMSWISQG--RSPIDYVMYQLTEPLMAPIRRIIPAMGGIDFSAMVVILILYLINYL 172
Cdd:pfam02325   5 SLYILLLIIRALLSWVPPNpfVNPIAQFLYRLTEPLLRPLRRIIPPPGGLDLSPLVALLLLQLLRIL 71
YGGT pfam02325
YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in ...
 10-62 3.00e-09

YGGT family; This family includes subunit CCB3 of cofactor assembly complex C, involved in c-type cytochrome maturation in photosynthetic organizms. This family also includes uncharacterized protein YggT, associated with bacteria outside the cyanobacteria.


Pssm-ID: 460533  Cd Length: 71  Bit Score: 51.33  E-value: 3.00e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 727164860   10 TVIDLYVMVLLLRIWMQW-TRTDFYNPFSQFVVKITQPVVGPLRRIIPSLGPID 62
Cdd:pfam02325   2 TLLSLYILLLIIRALLSWvPPNPFVNPIAQFLYRLTEPLLRPLRRIIPPPGGLD 55
Ycf19 COG0762
Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family ...
 1-62 9.89e-09

Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 440525  Cd Length: 84  Bit Score: 50.12  E-value: 9.89e-09
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727164860   1 MLTLTFLVKTVIDLYVMVLLLRIWMQWTRTDFYNPFSQFVVKITQPVVGPLRRIIPSLGPID 62
Cdd:COG0762    1 MLALLGLLSLLLNIYFWLIIIRAILSWVPPFGYNPIGRFLYQLTEPLLRPIRRIIPPLGGID 62
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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