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Conserved domains on  [gi|727178726|ref|WP_033642062|]
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MULTISPECIES: exodeoxyribonuclease VII small subunit [Serratia]

Protein Classification

exodeoxyribonuclease VII small subunit( domain architecture ID 10011590)

small subunit of exodeoxyribonuclease VII, which degrades single-stranded DNA bidirectionally into nucleoside 5'-phosphates

EC:  3.1.11.6
Gene Ontology:  GO:0008855|GO:0004527|GO:0006308
PubMed:  6284744
SCOP:  4002913

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 6-85 2.61e-28

exodeoxyribonuclease VII small subunit; Provisional


:

Pssm-ID: 179195  Cd Length: 80  Bit Score: 96.90  E-value: 2.61e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727178726  6 AQSASTEQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDAALAPFTPD 85
Cdd:PRK00977  1 TMPAKKSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLEPFDPD 80
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 6-85 2.61e-28

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 96.90  E-value: 2.61e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727178726  6 AQSASTEQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDAALAPFTPD 85
Cdd:PRK00977  1 TMPAKKSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLEPFDPD 80
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
12-85 1.46e-22

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 82.20  E-value: 1.46e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727178726 12 EQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDsADDAALAPFTPD 85
Cdd:COG1722   2 KKELSFEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLED-EDGELEEPFDPE 74
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 16-69 8.93e-18

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 69.76  E-value: 8.93e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 727178726  16 SFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQIL 69
Cdd:TIGR01280  1 SFEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 17-67 4.73e-17

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 67.79  E-value: 4.73e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 727178726  17 FESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQ 67
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQKIE 51
 
Name Accession Description Interval E-value
PRK00977 PRK00977
exodeoxyribonuclease VII small subunit; Provisional
 6-85 2.61e-28

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 179195  Cd Length: 80  Bit Score: 96.90  E-value: 2.61e-28
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727178726  6 AQSASTEQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDAALAPFTPD 85
Cdd:PRK00977  1 TMPAKKSKPLSFEEALAELEEIVTRLESGDLPLEESLAAFERGVALARQCQKKLQQAEQRVEKLLDEDGKEASLEPFDPD 80
XseB COG1722
Exonuclease VII small subunit [Replication, recombination and repair];
12-85 1.46e-22

Exonuclease VII small subunit [Replication, recombination and repair];


Pssm-ID: 441328  Cd Length: 74  Bit Score: 82.20  E-value: 1.46e-22
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727178726 12 EQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDsADDAALAPFTPD 85
Cdd:COG1722   2 KKELSFEEALAELEEIVERLESGELPLEESLALYERGVALAKRCQKKLDEAEQKVEKLLED-EDGELEEPFDPE 74
xseB TIGR01280
exodeoxyribonuclease VII, small subunit; This protein is the small subunit for ...
 16-69 8.93e-18

exodeoxyribonuclease VII, small subunit; This protein is the small subunit for exodeoxyribonuclease VII. Exodeoxyribonuclease VII is made of a complex of four small subunits to one large subunit. The complex degrades single-stranded DNA into large acid-insoluble oligonucleotides. These nucleotides are then degraded further into acid-soluble oligonucleotides. [DNA metabolism, Degradation of DNA]


Pssm-ID: 273536  Cd Length: 54  Bit Score: 69.76  E-value: 8.93e-18
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 727178726  16 SFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQIL 69
Cdd:TIGR01280  1 SFEEALAELEEIVEKLESGDLSLEESLKLYEEGIKLLKHCQKKLEEAEQKIEKL 54
Exonuc_VII_S pfam02609
Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11. ...
 17-67 4.73e-17

Exonuclease VII small subunit; This family consist of exonuclease VII, small subunit EC:3.1.11.6 This enzyme catalyzes exonucleolytic cleavage in either 5'->3' or 3'->5' direction to yield 5'-phosphomononucleotides. This exonuclease VII enzyme is composed of one large subunit and 4 small ones.


Pssm-ID: 460618  Cd Length: 51  Bit Score: 67.79  E-value: 4.73e-17
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|.
gi 727178726  17 FESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQ 67
Cdd:pfam02609  1 FEEALAELEEIVEKLESGELSLEESLKLYEEGIKLLKFCEKKLDEAEQKIE 51
PRK14066 PRK14066
exodeoxyribonuclease VII small subunit; Provisional
 17-85 1.51e-13

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172556  Cd Length: 75  Bit Score: 59.47  E-value: 1.51e-13
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 727178726 17 FESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDAALAPFTPD 85
Cdd:PRK14066  6 FETALKKLEEVVKKLEGGELSLDDSLKAFEEGVKHAAFCSKKLDEAERRVEVLLKQKDGSFVREPFRLD 74
PRK14063 PRK14063
exodeoxyribonuclease VII small subunit; Provisional
 12-87 6.94e-12

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184483  Cd Length: 76  Bit Score: 55.22  E-value: 6.94e-12
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727178726 12 EQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNdsaDDAALAPFTPDTE 87
Cdd:PRK14063  2 ENKLSFEEAISQLEHLVSKLEQGDVPLEEAISYFKEGMELSKLCDEKLKNVQEQMAVILG---EDGELEPFTALGD 74
PRK14064 PRK14064
exodeoxyribonuclease VII small subunit; Provisional
 16-87 3.12e-08

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172554  Cd Length: 75  Bit Score: 45.98  E-value: 3.12e-08
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727178726 16 SFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADDaalAPFTPDTE 87
Cdd:PRK14064  7 TFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTKLCQDKLQSAEKRMAKVVTDAGEE---IPFEADGE 75
PRK14068 PRK14068
exodeoxyribonuclease VII small subunit; Provisional
 10-76 9.76e-08

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184485  Cd Length: 76  Bit Score: 44.86  E-value: 9.76e-08
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 727178726 10 STEQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLNDSADD 76
Cdd:PRK14068  1 MTKETQSFEEMMQELEQIVQKLDNETVSLEESLDLYQRGMKLSAACDTTLKNAEKKVNDLIKEEAED 67
PRK14067 PRK14067
exodeoxyribonuclease VII small subunit; Provisional
 9-68 1.30e-07

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172557  Cd Length: 80  Bit Score: 44.42  E-value: 1.30e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727178726  9 ASTEQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQI 68
Cdd:PRK14067  1 AGRKKTADFEQQLARLQEIVDALEGGDLPLEESVALYKEGLGLARACREQLAKARNEIRL 60
PRK14069 PRK14069
exodeoxyribonuclease VII small subunit; Provisional
 9-72 2.33e-07

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 172559  Cd Length: 95  Bit Score: 44.24  E-value: 2.33e-07
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727178726  9 ASTEQTASFESALGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRVQILLND 72
Cdd:PRK14069  2 VEKKSKISFEDALRELEQIAEKLERQDFSLEESLKAYERGMELKKICSGILDDAEGKIEALTKD 65
PRK14070 PRK14070
exodeoxyribonuclease VII small subunit; Provisional
 21-66 1.76e-06

exodeoxyribonuclease VII small subunit; Provisional


Pssm-ID: 184486  Cd Length: 69  Bit Score: 41.55  E-value: 1.76e-06
                        10        20        30        40
                ....*....|....*....|....*....|....*....|....*.
gi 727178726 21 LGELESIVTRLESGELPLEDALNEFERGVQLARQGQQKLQQAEQRV 66
Cdd:PRK14070  1 MKELEEIVNRLENEDLPLEESIKLFERGVELYRKCKEILQQNRLKI 46
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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