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Conserved domains on  [gi|727187864|ref|WP_033649697|]
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MULTISPECIES: ABC transporter permease [Serratia]

Protein Classification

ABC transporter permease( domain architecture ID 11439530)

ABC transporter permease is the transmembrane subunit found in a periplasmic binding protein (PBP)-dependent ABC transport system, which may be involved in the transport of one or more from a variety of substrates including sugars, ions, amino acids, and peptides, among others

Gene Ontology:  GO:0140359|GO:0042626|GO:0016020
PubMed:  18535149|17723295|25750732|24638992
TCDB:  3.A.1

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 30-261 3.38e-58

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


:

Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 186.09  E-value: 3.38e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  30 YALATQWGATILPDGFTLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAV 109
Cdd:COG1177   30 YSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVV 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 110 PPVVSAVGLMQLFAAdpLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRK 189
Cdd:COG1177  110 PGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD-PSLEEAARDLGASPWQTFRRVTLPLIAP 186

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727187864 190 GGTIAVLLSFSFLIGEFVFANLLVGSQYETLQVYLYNM-RNGSGHFTSALVISYFAVVLLVTWLANLLNKNKG 261
Cdd:COG1177  187 GILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMiRRGISPEINALSTLLILLSLLLLLLAERLRRRGE 259
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 30-261 3.38e-58

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 186.09  E-value: 3.38e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  30 YALATQWGATILPDGFTLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAV 109
Cdd:COG1177   30 YSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVV 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 110 PPVVSAVGLMQLFAAdpLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRK 189
Cdd:COG1177  110 PGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD-PSLEEAARDLGASPWQTFRRVTLPLIAP 186

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727187864 190 GGTIAVLLSFSFLIGEFVFANLLVGSQYETLQVYLYNM-RNGSGHFTSALVISYFAVVLLVTWLANLLNKNKG 261
Cdd:COG1177  187 GILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMiRRGISPEINALSTLLILLSLLLLLLAERLRRRGE 259
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-251 9.31e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 67.69  E-value: 9.31e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  63 LWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAADPLPLLGTPWILVG--CY 140
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAliLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 141 FTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEFVFANLLVGSQYETL 220
Cdd:cd06261   81 LLLIAPFARLIRRAALESIP-KDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                        170       180       190
                 ....*....|....*....|....*....|.
gi 727187864 221 QVYLYNMRNGSGHFTSALVISYFAVVLLVTW 251
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 55-249 2.76e-13

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 67.80  E-value: 2.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864   55 SDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAA---------- 124
Cdd:TIGR02140  41 SDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGSqgwlgpwled 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  125 -DPLPLLGTPWILVGCYFtIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLI 203
Cdd:TIGR02140 121 lDIKIIFSLPGIVLATMF-VTCPFVARELIPVMEEQG-TEQEEAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAM 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 727187864  204 GEF-----VFANLLVGSQYETLQV-YLYNMRNGSGHFTSALVISYFAVVLLV 249
Cdd:TIGR02140 199 GEFgavsvVSGHIRGKTNTLPLHVeLLYNEYQSYAAFAAASLLALLALVTLV 250
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 44-260 4.05e-11

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 61.54  E-value: 4.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  44 GFTLKWLTALWSDPRFLQALWHSLLI-CFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAvPPVVSAVGLMQLF 122
Cdd:PRK09500  40 GFTTKWYELLFNNDSLLQAAQHSLTMaVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMS-PDIVMAISLLVLF 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 123 AADPLPLlgTPWILVGCYFTIALPFIYRAISNNMQAINLRdLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFL 202
Cdd:PRK09500 119 MLLGIQL--GFWSLLFAHITFCLPFVVVTVYSRLKGFDVR-MLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLS 195

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 727187864 203 IGEFVFANLLVGSQYETLQVYLYNM-RNGSGHFTSALVISYFAVVLLVTWLANLLNKNK 260
Cdd:PRK09500 196 LDDVVVSSFVTGPSYEILPLKIYSMvKVGVSPEVNALATILLVLSLVLVILSQLLARDK 254
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 84-258 1.22e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 47.68  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864   84 AMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAADPLPLLGTPWILVgcYFTIALPFIYRAISNNMQAINlRD 163
Cdd:pfam00528   5 GIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIIL--ALLGWAGYARLIRRAALRSLP-SD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  164 LMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEFVFANLL---VGSQYETLQVYLYNMRNGSGHFTSALVI 240
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAAL 161

                         170
                  ....*....|....*...
gi 727187864  241 SYFAVVLLVTWLANLLNK 258
Cdd:pfam00528 162 ILLLLNLLVDILQRLLDP 179
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 66-214 4.99e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 42.92  E-value: 4.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  66 SLLICFGTLLLSVVVILPAMFVIA-YYFPKLDSVMNVLILLpFAVPPVVsaVGL---MQLFAADPLPLLG---TPWILVG 138
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLAlRRFPGRRLVISLLNTL-MGLPPVV--VGLivyLLLSRSGPLGFLGllyTPTAMII 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727187864 139 CYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQaALWVVLPNLRKGGTIAVLLSFSFLIGEfVFANLLVG 214
Cdd:NF038017  78 AQAVLALPIVAGLTLAAVQGLD-PELRLQILSLGATRWQ-ALWTLLKEARFALLAAVLAGFGRAISE-VGAVMMVG 150
 
Name Accession Description Interval E-value
PotC COG1177
ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport ...
 30-261 3.38e-58

ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism];


Pssm-ID: 440790 [Multi-domain]  Cd Length: 262  Bit Score: 186.09  E-value: 3.38e-58
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  30 YALATQWGATILPDGFTLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAV 109
Cdd:COG1177   30 YSFNDSWFLTFPPEGFTLRWYAELFSDPRLLDALLNSLLIALLSTLLATVLGTPAALALARYRFRGRRLLLALLLLPLVV 109

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 110 PPVVSAVGLMQLFAAdpLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRK 189
Cdd:COG1177  110 PGIVLGVALLLLFSA--LGLSGGLWGLILAHVVFTLPFVVLVVLARLQGFD-PSLEEAARDLGASPWQTFRRVTLPLIAP 186

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727187864 190 GGTIAVLLSFSFLIGEFVFANLLVGSQYETLQVYLYNM-RNGSGHFTSALVISYFAVVLLVTWLANLLNKNKG 261
Cdd:COG1177  187 GILAGALLAFTLSFDEFVITLFLAGPGVTTLPVYIYSMiRRGISPEINALSTLLILLSLLLLLLAERLRRRGE 259
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
39-260 2.68e-29

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 115.26  E-value: 2.68e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  39 TILPDGFTLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGL 118
Cdd:COG1178  316 KALDDNLTLDNYRFVLLDPSLLRALLNSLLLALLAALLAVLLALLLAYLVRRRRGRLARLLDRLAMLPYAVPGIVLGLGL 395

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 119 MQLFAA-DPLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLL 197
Cdd:COG1178  396 LLLFNRpLPLLLYGTLAILVLAYVVRFLPFALRSLEAALAQID-PSLEEAARSLGASPLRTLRRVTLPLLRPGLLAAALL 474

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727187864 198 SFSFLIGEFVFANLLVGSQYETLQVYLYNMrNGSGHFTSALVIS--YFAVVLLVTWLANLLNKNK 260
Cdd:COG1178  475 VFVTSMKELSATLLLRPPGFETLAVLIYQL-ASSGRYGEAAALAllLVLVSLLPVLLLERLLGRR 538
PotB COG1176
ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport ...
 21-258 2.11e-21

ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism];


Pssm-ID: 440789 [Multi-domain]  Cd Length: 287  Bit Score: 90.59  E-value: 2.11e-21
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  21 LLPLAATLIYALATQWGATILPDGFTLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMN 100
Cdd:COG1176   27 VLPLLLLLVYSFTTRDPYGGVVPGFTLENYARLFTDPLYLKVLLRTLWIALLTTLICLLLGYPIAYFLARAPPRWRNLLL 106

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 101 VLILLPFAVPPVVSAVGLMQLFAAD---------------PLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINlRDLM 165
Cdd:COG1176  107 LLVILPFWTSFLVRTYAWIVLLGRNgllnslllalglidePLRLLYTEFAVVIGLVYVYLPFMVLPLYAALEKID-PSLL 185

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 166 DAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEFVFANLLVGSQYETLQVYLYNMRNGSG--HFTSALVISYF 243
Cdd:COG1176  186 EAARDLGASPWQTFRRVILPLSLPGIIAGSLLVFIPALGAFVTPALLGGGKVLMIGNLIYQQFLSALnwPLAAALAVVLL 265

                        250
                 ....*....|....*
gi 727187864 244 AVVLLVTWLANLLNK 258
Cdd:COG1176  266 LIVLLVLLLYLRLLR 280
UgpE COG0395
ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and ...
 33-232 4.80e-20

ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440164 [Multi-domain]  Cd Length: 282  Bit Score: 86.69  E-value: 4.80e-20
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  33 ATQWGATILPDGFTLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPV 112
Cdd:COG0395   46 IFSGPPSLLPSEFTLENYRAAFTDGPFGRYLLNSLIVAVVSTVLSLLLSSLAAYALARFRFRGRKLLFLLILATLMIPGQ 125

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 113 VSAVGLMQLFAAdpLPLLGTPWILVGCYFTIALPF---IYRaisNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRK 189
Cdd:COG0395  126 VLLIPLYLLFRQ--LGLLNTYWGLILPYLAFGLPFgifLLR---QFFRSIP-RELEEAARIDGASEFRIFWRIVLPLSKP 199

                        170       180       190       200
                 ....*....|....*....|....*....|....*....|....*.
gi 727187864 190 GgtIAVLLSFSFLIG--EFVFANLLVGSQ-YETLQVYLYNMRNGSG 232
Cdd:COG0395  200 A--LATVAIFTFIGAwnDFLWPLILLTSPdLRTLPVGLASFQGQYG 243
FbpB COG1178
ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];
47-260 1.72e-17

ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440791 [Multi-domain]  Cd Length: 538  Bit Score: 81.36  E-value: 1.72e-17
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  47 LKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAA-- 124
Cdd:COG1178   40 LANFWALLSDPYLWRALGNTLLLALLVTLLSLLLGVPLAWLLARTDFPGRRLLRWLLLLPLALPPYVVALAWIALFGPng 119

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 125 ------------DPLPLLGTPWILVGcyFTIAL-PFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGG 191
Cdd:COG1178  120 llntllralfglEPPDIYGLGGIILV--LVLFNyPYVYLLLRAALRSID-ASLEEAARSLGASPWRAFRRVTLPLLRPAI 196

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 727187864 192 TIAVLLSFSFLIGEFVfANLLVGSQYETLQVYLYNMRNGSGHFTSALVISY--FAVVLLVTWLANLLNKNK 260
Cdd:COG1178  197 AAGALLVFLLCLADFG-TPLVLGGGYTTLTTAIYQAWLGDFDLGAAAALALvlLLLVLLLLLLERRLRRRR 266
ModB COG4149
ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and ...
 56-261 1.53e-15

ABC-type molybdate transport system, permease component ModB [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, permease component ModB is part of the Pathway/BioSystem: Molybdopterin biosynthesis


Pssm-ID: 443320 [Multi-domain]  Cd Length: 223  Bit Score: 73.16  E-value: 1.53e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  56 DPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVsaVGLMQLFAADPLPLLGTPW- 134
Cdd:COG4149    2 SPEDWSALWLSLKVALIATLLLLLLGIPLAWWLARTRFRGKGLLEALVTLPLVLPPTV--LGFYLLLLFGRNGPLGQLLe 79

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 135 -------------ILVGCYFtIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSF 201
Cdd:COG4149   80 elfgislvftwtgAVLASVV-VSLPLMVQPLRAAFEAVD-PRLEEAARTLGASPWRVFFRVTLPLAKPGILAGAVLAFAR 157

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727187864 202 LIGEFvFANLLVGS----QYETLQVYLYNMRNgSGHFTSA--LVISYFAVVLLVTWLANLLNKNKG 261
Cdd:COG4149  158 ALGEF-GATLMFAGnipgKTQTLPLAIYDAVE-AGDYAAAhaLSLILLAISFVVLLLLNLLNRRRR 221
CysU COG0555
ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism]; ...
 52-206 2.71e-15

ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440321 [Multi-domain]  Cd Length: 268  Bit Score: 73.25  E-value: 2.71e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  52 ALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAADP----- 126
Cdd:COG0555   45 AVLTSPRVLAALKLSLGTALIAALINLVFGLPLAWVLVRYRFPGKRLVDALVDLPFALPTAVAGIALLLLFGPNGwlgql 124

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 127 -----LPLLGTPWILVGCYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSF 201
Cdd:COG0555  125 laplgIKVAFTPLGIVLAQTFVSLPFVVRTVQPVLEELD-PELEEAAATLGASRWQTFRRVILPLLLPALLTGFALAFAR 203


                 ....*
gi 727187864 202 LIGEF 206
Cdd:COG0555  204 ALGEF 208
UgpA COG1175
ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];
34-261 6.76e-14

ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism];


Pssm-ID: 440788 [Multi-domain]  Cd Length: 298  Bit Score: 69.78  E-value: 6.76e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  34 TQWGATILPDGFT-LKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILpAMFVIAYYFPKLDSVMNVLILLPFAVPPV 112
Cdd:COG1175   48 TDWNLLGPPPEFVgLDNYARLFTDPRFWNALGNTLLFTVVSVPLQLVLGL-LLALLLNRKLRGRGFFRTLFFLPWVISPV 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 113 VSAV--------------GLMQLFAADPLPLLGTPWILvgcYFTIALPFIYRAISNNM-------QAINlRDLMDAAHLL 171
Cdd:COG1175  127 VVALiwkwlfnpdygllnALLGALGLEPINWLGDPSLA---LPAVIIVTVWKGTGFNMliflaglQSIP-RELYEAARID 202

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 172 GASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEFVFANLLVG----SQYETLQVYLYNMRNGSGHF--TSALVISYFAV 245
Cdd:COG1175  203 GASPWQRFRRITLPLLRPTILFVLVLSTIGALQVFDLVYVLTGggpgNSTTTLVLYIYQTAFQQFDFgyASAIAVVLFLI 282

                        250
                 ....*....|....*.
gi 727187864 246 VLLVTWLANLLNKNKG 261
Cdd:COG1175  283 ILVLTLLQLRLLRRRE 298
TM_PBP2 cd06261
Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 63-251 9.31e-14

Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. For these transporters the ABCs and TMs are on independent polypeptide chains. These systems transport a diverse range of substrates. Most are specific for a single substrate or a group of related substrates; however some transporters are more promiscuous, transporting structurally diverse substrates such as the histidine/lysine and arginine transporter in Enterobacteriaceae. In the latter case, this is achieved through binding different PBPs with different specificities to the TMs. For other promiscuous transporters such as the multiple-sugar transporter Msm of Streptococcus mutans, the PBP has a wide substrate specificity. These transporters include the maltose-maltodextrin, phosphate and sulfate transporters, among others.


Pssm-ID: 119394 [Multi-domain]  Cd Length: 190  Bit Score: 67.69  E-value: 9.31e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  63 LWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAADPLPLLGTPWILVG--CY 140
Cdd:cd06261    1 LLNTLLLALIATLLALVLGLLLGIILARKRGKLDRLLRRIIDLLLSLPSLVLGLLLVLLFGVLLGWGILPGLGLPAliLA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 141 FTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEFVFANLLVGSQYETL 220
Cdd:cd06261   81 LLLIAPFARLIRRAALESIP-KDLVEAARALGASPWQIFRRIILPLALPPILTGLVLAFARALGEFALVSFLGGGEAPGP 159

                        170       180       190
                 ....*....|....*....|....*....|.
gi 727187864 221 QVYLYNMRNGSGHFTSALVISYFAVVLLVTW 251
Cdd:cd06261  160 GTGLLLIFAILFPGDLGVAAAVALILLLLSL 190
permease_CysW TIGR02140
sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two ...
 55-249 2.76e-13

sulfate ABC transporter, permease protein CysW; This model represents CysW, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysT (TIGR02139). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions]


Pssm-ID: 162725  Cd Length: 261  Bit Score: 67.80  E-value: 2.76e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864   55 SDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAA---------- 124
Cdd:TIGR02140  41 SDPDALSAIKLTLLVALIVVPLNTVFGVCAAWVLTRFQFPGKRLLLTIIDLPFSVSPVVAGLIFVLLYGSqgwlgpwled 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  125 -DPLPLLGTPWILVGCYFtIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLI 203
Cdd:TIGR02140 121 lDIKIIFSLPGIVLATMF-VTCPFVARELIPVMEEQG-TEQEEAALTLGASWWQTFWRVTLPNIKWGLLYGVILCNARAM 198

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 727187864  204 GEF-----VFANLLVGSQYETLQV-YLYNMRNGSGHFTSALVISYFAVVLLV 249
Cdd:TIGR02140 199 GEFgavsvVSGHIRGKTNTLPLHVeLLYNEYQSYAAFAAASLLALLALVTLV 250
potC PRK09500
spermidine/putrescine ABC transporter membrane protein; Reviewed
 44-260 4.05e-11

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 236542 [Multi-domain]  Cd Length: 256  Bit Score: 61.54  E-value: 4.05e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  44 GFTLKWLTALWSDPRFLQALWHSLLI-CFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAvPPVVSAVGLMQLF 122
Cdd:PRK09500  40 GFTTKWYELLFNNDSLLQAAQHSLTMaVFSATFATLIGSLTAVALYRYRFRGKKFVSGMLFVVMMS-PDIVMAISLLVLF 118

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 123 AADPLPLlgTPWILVGCYFTIALPFIYRAISNNMQAINLRdLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFL 202
Cdd:PRK09500 119 MLLGIQL--GFWSLLFAHITFCLPFVVVTVYSRLKGFDVR-MLEAAKDLGASEFTILRKIILPLALPAVAAGWLLSFTLS 195

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|....*....
gi 727187864 203 IGEFVFANLLVGSQYETLQVYLYNM-RNGSGHFTSALVISYFAVVLLVTWLANLLNKNK 260
Cdd:PRK09500 196 LDDVVVSSFVTGPSYEILPLKIYSMvKVGVSPEVNALATILLVLSLVLVILSQLLARDK 254
thiP PRK09433
thiamine transporter membrane protein; Reviewed
 38-225 4.89e-10

thiamine transporter membrane protein; Reviewed


Pssm-ID: 181853 [Multi-domain]  Cd Length: 525  Bit Score: 59.46  E-value: 4.89e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  38 ATILPDGFTLKWLTaLWSDPRFLQALWHSLLICFG----TLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVV 113
Cdd:PRK09433 297 LAVVVSGLNASLLR-VLAQPALWQALWTSLRIALAaallAVVLTMMLLWSSRELRLRQRKLAAQALELSGMLILAMPGIV 375

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 114 SAVGLMQLFAADPLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINLRDLMDAAHlLGASTWQAALWVVLPNLRKGGTI 193
Cdd:PRK09433 376 LATGLFLLLRNTTDLPASALGIVILTNALMALPYALRVLEPPMRDIAARYGRLCQS-LGIRGWSRLRLIELRALRRPLAQ 454

                        170       180       190
                 ....*....|....*....|....*....|....
gi 727187864 194 AVLLSFSFLIGEF-VFAnlLVGSQ-YETLQVYLY 225
Cdd:PRK09433 455 AFAFACALSLGDFgVIA--LFGSQdFRTLPFLLY 486
cysW PRK11602
sulfate/thiosulfate ABC transporter permease CysW;
55-249 8.58e-07

sulfate/thiosulfate ABC transporter permease CysW;


Pssm-ID: 183225  Cd Length: 283  Bit Score: 48.98  E-value: 8.58e-07
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  55 SDPRFLQALWHSLLICFGTLLLSVVV-ILPAMFVIAYYFPKLDSVMNvLILLPFAVPPVVSavGLM-------------- 119
Cdd:PRK11602  58 ADPDMLHAIWLTVLIALIAVPVNLVFgILLAWLVTRFNFPGRQLLLT-LLDIPFAVSPVVA--GLVyllfygsngplggw 134

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 120 ------QLFAADPLPLLGTpwILVGCyftialPFIYRAISNNMQAINLRDlMDAAHLLGASTWQAALWVVLPNLRKGGTI 193
Cdd:PRK11602 135 ldehnlQLMFSWPGMVLVT--IFVTC------PFVVRELVPVMLSQGSQE-DEAAILLGASGWQMFRRVTLPNIRWALLY 205

                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 727187864 194 AVLLSFSFLIGEFVFANLLVGS-QYET----LQV-YLYNMRNGSGHFTSALVISYFAVVLLV 249
Cdd:PRK11602 206 GVVLTNARAIGEFGAVSVVSGSiRGETlslpLQIeLLEQDYNTVGSFTAAALLTLMAIITLF 267
BPD_transp_1 pfam00528
Binding-protein-dependent transport system inner membrane component; The alignments cover the ...
 84-258 1.22e-06

Binding-protein-dependent transport system inner membrane component; The alignments cover the most conserved region of the proteins, which is thought to be located in a cytoplasmic loop between two transmembrane domains. The members of this family have a variable number of transmembrane helices.


Pssm-ID: 334128 [Multi-domain]  Cd Length: 183  Bit Score: 47.68  E-value: 1.22e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864   84 AMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAADPLPLLGTPWILVgcYFTIALPFIYRAISNNMQAINlRD 163
Cdd:pfam00528   5 GIIAALRRGRRLDRLLRPLIDLLQALPSFVLAILLVVIAILSILGHGILPAIIL--ALLGWAGYARLIRRAALRSLP-SD 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  164 LMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEFVFANLL---VGSQYETLQVYLYNMRNGSGHFTSALVI 240
Cdd:pfam00528  82 LVEAARALGASRWQIFRKIILPNALPPILTGLALAFGGALGGAVLLEFLgswPGLGLLLIEAILGYDYPEIQGPVLAAAL 161

                         170
                  ....*....|....*...
gi 727187864  241 SYFAVVLLVTWLANLLNK 258
Cdd:pfam00528 162 ILLLLNLLVDILQRLLDP 179
PhnU2 TIGR03262
putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding ...
 50-249 1.52e-06

putative 2-aminoethylphosphonate ABC transporter, permease protein; [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 274495 [Multi-domain]  Cd Length: 546  Bit Score: 48.91  E-value: 1.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864   50 LTALWSDPRFLQALWHSLLICfgtlLLSVVVILPAMFVIAYYFP----KLDSVMNVLILLPFAVPPVVSAVGLMQLFAAD 125
Cdd:TIGR03262  43 FAEYFATPGLLQSLGNSLTVS----AIVTAIVVPLAFAFAYALTrsriPGKGAFRLVALLPLLAPSLLPAISLIYLFGNQ 118

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  126 PL--------PLLGTPWILVG-CYFTiaLPFIYRAISNNMQAINLRdLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVL 196
Cdd:TIGR03262 119 GLlkgllggfSIYGFWGIVIGeVFYT--FPHALMILVTALSLADGR-LYEAARAMGASPWRTFFTVTLPGAKYGLISAAF 195

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 727187864  197 LSFSFLIGEFvFANLLVGSQYETLQVYLYNMRNGSGHFTSALVISyfaVVLLV 249
Cdd:TIGR03262 196 VVFTLVITDF-GVPKVIGGDYNVLATDIYKQVIGQQNFPMGAVVG---VLLLL 244
DppC COG1173
ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid ...
 58-201 3.63e-06

ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];


Pssm-ID: 440786 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 3.63e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  58 RFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAADPLPLLgtpwILV 137
Cdd:COG1173   73 RLLYGARISLLVGLLAVLIALVIGVLLGLLAGYFGGWVDAVLMRLVDVLLAFPSLLLAIALVAVLGPGLLNVI----LAL 148

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727187864 138 GCyftIALPFIYRAISNNMQAINLRDLMDAAHLLGASTWQAALWVVLPNLRkgGTIAVLLSFSF 201
Cdd:COG1173  149 GL---TGWPGYARLVRAQVLSLREREYVEAARALGASPLRIIFRHILPNVL--PPLIVQATLGI 207
thiP TIGR01253
thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, ...
 40-240 4.85e-06

thiamine ABC transporter, permease protein; The model describes thiamine ABC transporter, permease protein in bacteria. The protein belongs to the larger ABC transport system. It consists of atleast three components: the inner mebrane permease; thiamine binding protein; an ATP-binding subunit. It has been experimentally demonstrated that the mutants in the various steps in the de novo synthesis of the thiamine and the biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate (TMP) or thiamine pyrophosphate (TPP). [Transport and binding proteins, Other]


Pssm-ID: 130320 [Multi-domain]  Cd Length: 519  Bit Score: 47.22  E-value: 4.85e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864   40 ILPDGFTLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPAMF----VIAYYFPKLDSVMNVLILLPFAVPPVVSA 115
Cdd:TIGR01253 302 IIIDALNSRNLLEVLANPQLWQALGTSLRIALAAALLALTLAIALLLlsreLEALHKMKAGQFIEMAGMLILAIPGIVLA 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  116 VGLMQLFAADPLPLLGTPWILVGCYFTIALPFIYRAISNNMQAiNLRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAV 195
Cdd:TIGR01253 382 MGFFLLLNDRDFLNIDADGIVIFCNALMAIPFALKILEAPFHD-IMARYEMLCNSLGIEGWQRFKLIELKALKAPLAQAF 460

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 727187864  196 LLSFSFLIGEFVFANLLVGSQYETLQVYLY----NMRNGSGHFTSALVI 240
Cdd:TIGR01253 461 AFACALSIGDFGAIALFGNDDFRSLPFLLYqqigNYRNQDAAVTAGILL 509
potB PRK09497
spermidine/putrescine ABC transporter membrane protein; Reviewed
 45-258 1.09e-05

spermidine/putrescine ABC transporter membrane protein; Reviewed


Pssm-ID: 181910  Cd Length: 285  Bit Score: 45.83  E-value: 1.09e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  45 FTLKWLTALWsDPRFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAA 124
Cdd:PRK09497  48 FTLDNYTRLL-DPLYAEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTNSLIRIYGLKIFLST 126

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 125 ---------------DPLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINLRdLMDAAHLLGASTWQAALWVVLPNLRK 189
Cdd:PRK09497 127 kgylnefllwlgvidTPIRIMFTESAVIIGLVYILLPFMVLPLYSSIEKLDKP-LLEAARDLGANKLQTFIRIIIPLTMP 205

                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727187864 190 GGTIAVLLSFSFLIGEFVFANLLVGSQY----ETLQVYLYNMRNGS-GHFTSALVISYFAVVLLVTWLAN-LLNK 258
Cdd:PRK09497 206 GIIAGCLLVLLPAMGMFYVSDLLGGAKNlligNVIKSQFLNIRDWPfGAATSITLTIVMGLMLLVYYRASkLLNK 280
cysT CHL00187
sulfate transport protein; Provisional
 67-206 2.73e-05

sulfate transport protein; Provisional


Pssm-ID: 214388 [Multi-domain]  Cd Length: 237  Bit Score: 44.23  E-value: 2.73e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  67 LLICFGTLLLSVVVILPAMFVIAYYFPK---LDSVMNvlilLPFAVPPVVSAVGLM----------QLFAADPLPLLGTP 133
Cdd:CHL00187  62 SMALIAALINGFFGLLIAWVLVRYNFPGkrlLDAAVD----LPFALPTSVAGLTLAtvygdngwigHLLSHLGIQIVFTK 137

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 727187864 134 WILVGCYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEF 206
Cdd:CHL00187 138 LGVLLAMIFVSFPFVVRTIQPVLQEIE-KELEEAAWSLGASPWQTFWKVIFPPLIPALLTGLALTFSRAIGEY 209
ABC_perm1 NF038017
ABC transporter permease; Proteins of this family are the permease subunit of an ABC ...
 66-214 4.99e-05

ABC transporter permease; Proteins of this family are the permease subunit of an ABC transporter complex, which may be involved in tungstate uptake.


Pssm-ID: 411610 [Multi-domain]  Cd Length: 184  Bit Score: 42.92  E-value: 4.99e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  66 SLLICFGTLLLSVVVILPAMFVIA-YYFPKLDSVMNVLILLpFAVPPVVsaVGL---MQLFAADPLPLLG---TPWILVG 138
Cdd:NF038017   1 SLRVSGTATLIAALIGIPLGALLAlRRFPGRRLVISLLNTL-MGLPPVV--VGLivyLLLSRSGPLGFLGllyTPTAMII 77

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 727187864 139 CYFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQaALWVVLPNLRKGGTIAVLLSFSFLIGEfVFANLLVG 214
Cdd:NF038017  78 AQAVLALPIVAGLTLAAVQGLD-PELRLQILSLGATRWQ-ALWTLLKEARFALLAAVLAGFGRAISE-VGAVMMVG 150
TauC COG0600
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion ...
 46-185 8.51e-05

ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440365 [Multi-domain]  Cd Length: 254  Bit Score: 42.83  E-value: 8.51e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  46 TLKWLTALWSDPRFLQALWHSLLICFGTLLLSVVVILPaMFVIAYYFPKLDSVMNVLILLPFAVPPVVSAVGLMQLFAAD 125
Cdd:COG0600   46 VLAALVELLASGELWEHLLASLLRVLLGFALAALLGVP-LGLLLGLSRLLRRLLDPLLVFLRPIPPLALAPLLILWFGIG 124

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864 126 PLPLlgtpwILVGcyFTIALPFIYRAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLP 185
Cdd:COG0600  125 EASK-----IFVI--FLGAFFPILLNTAAGVRSVD-PELLELARSLGASRWQILRKVVLP 176
modB PRK09421
molybdate ABC transporter permease subunit;
60-206 3.71e-04

molybdate ABC transporter permease subunit;


Pssm-ID: 181841  Cd Length: 229  Bit Score: 40.68  E-value: 3.71e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  60 LQALWHSLLICFGTLLLSVVV-ILPAMFVIAYYFPKlDSVMNVLILLPFAVPPVVSAVGLMQLFAAD-PLPLLGTPWILV 137
Cdd:PRK09421   8 WQAVLLSLKVSSVAVLFSLPFgILVAWLLARCRFPG-KSLLDSLLHLPLVLPPVVTGYLLLISMGRRgFIGQWLYEWFGI 86

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 727187864 138 GCYFT----------IALPFIYRAISNNMQAINLRdLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEF 206
Cdd:PRK09421  87 SFAFSwrgaalaaavMAFPLMVRAIRLSLEAVDRK-LEQAARTLGASPWRVFFTITLPLTLPGIIAGTVLAFARSLGEF 164
YnjC COG4135
ABC-type uncharacterized transport system YnjBCD, permease component [General function ...
 30-187 4.11e-04

ABC-type uncharacterized transport system YnjBCD, permease component [General function prediction only];


Pssm-ID: 443310 [Multi-domain]  Cd Length: 564  Bit Score: 41.39  E-value: 4.11e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  30 YALATQWG-ATILPDGFTLKWLTALWSDprFLQALWHSLLICFGTLLLSVVVILPAMFVIAYYFPKLDSVMNVLILLPFA 108
Cdd:COG4135  326 WSFAGRWRfPDALPSSWTLRFWQRAAPG--LLEPLGNTLLLALASALIALVLVLACLEAEARRGRRPGRRALWLLYLPLL 403

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 727187864 109 VPPVVSAVGLMQLFAAdpLPLLGTPWILVGCYFTIALPFIYRAISNNMQAINLRdLMDAAHLLGASTWQAALWVVLPNL 187
Cdd:COG4135  404 VPQIAFLFGLQVLLLR--LGLDGTWLAVIWAHLVFVLPYVFLSLAGPWRALDPR-YAQVAASLGASPWRVFWRVKLPLL 479
PRK10971 PRK10971
sulfate/thiosulfate ABC transporter permease CysT;
81-206 9.20e-04

sulfate/thiosulfate ABC transporter permease CysT;


Pssm-ID: 182873  Cd Length: 277  Bit Score: 39.74  E-value: 9.20e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727187864  81 ILPAMFVIAYYFPKlDSVMNVLILLPFAVPPVVSAVGLMQLFAADP-----LPLLGTP----W--ILVGCYFTiALPFIY 149
Cdd:PRK10971  79 LLMAWILTRYRFPG-RTLLDALMDLPFALPTAVAGLTLASLFSVNGwygewLAKFDIKvtytWlgIAVAMAFT-SIPFVV 156

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 727187864 150 RAISNNMQAINlRDLMDAAHLLGASTWQAALWVVLPNLRKGGTIAVLLSFSFLIGEF 206
Cdd:PRK10971 157 RTVQPVLEELG-PEYEEAAETLGATRWQSFRKVVLPELSPALLAGVALSFTRSLGEF 212
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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