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Conserved domains on  [gi|727281880|ref|WP_033739941|]
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MULTISPECIES: hypothetical protein [Pantoea]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
TrmB super family cl30732
tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; tRNA G46 ...
 18-50 5.23e-03

tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; tRNA G46 N7-methylase TrmB is part of the Pathway/BioSystem: tRNA modification


The actual alignment was detected with superfamily member COG0220:

Pssm-ID: 439990  Cd Length: 204  Bit Score: 32.80  E-value: 5.23e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 727281880  18 VARLLKPDGELHLQ-DIvsslHNYSEQSTEQLEK 50
Cdd:COG0220  133 LARVLKPGGELHLAtDW----EDYAEEMLEVLSA 162
 
Name Accession Description Interval E-value
TrmB COG0220
tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; tRNA G46 ...
 18-50 5.23e-03

tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; tRNA G46 N7-methylase TrmB is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 439990  Cd Length: 204  Bit Score: 32.80  E-value: 5.23e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 727281880  18 VARLLKPDGELHLQ-DIvsslHNYSEQSTEQLEK 50
Cdd:COG0220  133 LARVLKPGGELHLAtDW----EDYAEEMLEVLSA 162
trmB PRK00121
tRNA (guanine-N(7)-)-methyltransferase; Reviewed
 16-49 7.27e-03

tRNA (guanine-N(7)-)-methyltransferase; Reviewed


Pssm-ID: 234649  Cd Length: 202  Bit Score: 32.44  E-value: 7.27e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 727281880  16 TIVARLLKPDGELHLQ-DIvsslHNYSEQSTEQLE 49
Cdd:PRK00121 140 ALYARKLKPGGEIHFAtDW----EGYAEYMLEVLS 170
 
Name Accession Description Interval E-value
TrmB COG0220
tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; tRNA G46 ...
 18-50 5.23e-03

tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; tRNA G46 N7-methylase TrmB is part of the Pathway/BioSystem: tRNA modification


Pssm-ID: 439990  Cd Length: 204  Bit Score: 32.80  E-value: 5.23e-03
                         10        20        30
                 ....*....|....*....|....*....|....
gi 727281880  18 VARLLKPDGELHLQ-DIvsslHNYSEQSTEQLEK 50
Cdd:COG0220  133 LARVLKPGGELHLAtDW----EDYAEEMLEVLSA 162
trmB PRK00121
tRNA (guanine-N(7)-)-methyltransferase; Reviewed
 16-49 7.27e-03

tRNA (guanine-N(7)-)-methyltransferase; Reviewed


Pssm-ID: 234649  Cd Length: 202  Bit Score: 32.44  E-value: 7.27e-03
                         10        20        30
                 ....*....|....*....|....*....|....*
gi 727281880  16 TIVARLLKPDGELHLQ-DIvsslHNYSEQSTEQLE 49
Cdd:PRK00121 140 ALYARKLKPGGEIHFAtDW----EGYAEYMLEVLS 170
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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