NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|727282293|ref|WP_033740322|]
View 

MULTISPECIES: Rho-binding antiterminator [Pantoea]

Protein Classification

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
ROF super family cl09210
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
 3-86 4.51e-49

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


The actual alignment was detected with superfamily member PRK11625:

Pssm-ID: 471864  Cd Length: 84  Bit Score: 149.48  E-value: 4.51e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727282293  3 MNEAYKPINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRKNVEYLAIELSGETRELRLDHIASFSHPELGTVV 82
Cdd:PRK11625  1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAAGETRELRLDKIASFSHPEIGTVV 80


                ....
gi 727282293 83 VSEE 86
Cdd:PRK11625 81 VSES 84
 
Name Accession Description Interval E-value
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
 3-86 4.51e-49

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 149.48  E-value: 4.51e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727282293  3 MNEAYKPINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRKNVEYLAIELSGETRELRLDHIASFSHPELGTVV 82
Cdd:PRK11625  1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAAGETRELRLDKIASFSHPEIGTVV 80


                ....
gi 727282293 83 VSEE 86
Cdd:PRK11625 81 VSES 84
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
4-86 1.51e-38

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 123.11  E-value: 1.51e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727282293  4 NEAYKPINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRKNVEYLAIELSGETRELRLDHIASFSHPELG---- 79
Cdd:COG4568   1 NEEYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTLTRKKVEYLVLETDGETRELRLDHIASFSALELGphfs 80


                ....*..
gi 727282293 80 TVVVSEE 86
Cdd:COG4568  81 TVVFSPS 87
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
 9-83 2.17e-32

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 107.29  E-value: 2.17e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727282293   9 PINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRK-NVEYLAIELSGETRELRLDHIASFS----HPELGTVVV 83
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRAdKEEYLVIETEGEEQELRLDQLVSISvltpNPHFGRVVF 80
 
Name Accession Description Interval E-value
PRK11625 PRK11625
Rho-binding antiterminator; Provisional
 3-86 4.51e-49

Rho-binding antiterminator; Provisional


Pssm-ID: 183241  Cd Length: 84  Bit Score: 149.48  E-value: 4.51e-49
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727282293  3 MNEAYKPINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRKNVEYLAIELSGETRELRLDHIASFSHPELGTVV 82
Cdd:PRK11625  1 MNDTYQPINCDDYDNLELACQHHLMLTLELKDGEVLQAKASDLVSRKNVEYLVVEAAGETRELRLDKIASFSHPEIGTVV 80


                ....
gi 727282293 83 VSEE 86
Cdd:PRK11625 81 VSES 84
Rof COG4568
Transcriptional antiterminator Rof (Rho-off) [Transcription];
4-86 1.51e-38

Transcriptional antiterminator Rof (Rho-off) [Transcription];


Pssm-ID: 443625  Cd Length: 87  Bit Score: 123.11  E-value: 1.51e-38
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727282293  4 NEAYKPINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRKNVEYLAIELSGETRELRLDHIASFSHPELG---- 79
Cdd:COG4568   1 NEEYQPISCDDYDYLEIACLRRYPVKLTLKNGETIEGKARDTLTRKKVEYLVLETDGETRELRLDHIASFSALELGphfs 80


                ....*..
gi 727282293 80 TVVVSEE 86
Cdd:COG4568  81 TVVFSPS 87
ROF pfam07073
Modulator of Rho-dependent transcription termination (ROF); This family consists of several ...
 9-83 2.17e-32

Modulator of Rho-dependent transcription termination (ROF); This family consists of several bacterial modulator of Rho-dependent transcription termination (ROF) proteins. ROF binds transcription termination factor Rho and inhibits Rho-dependent termination in vivo.


Pssm-ID: 429276  Cd Length: 80  Bit Score: 107.29  E-value: 2.17e-32
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 727282293   9 PINCDDYDNLELACQKNWMLSLALKDGEQLKAKARDILSRK-NVEYLAIELSGETRELRLDHIASFS----HPELGTVVV 83
Cdd:pfam07073  1 PISCDDYDYIEIACLYRYPLKLTLKDGETIEGKALDTLTRAdKEEYLVIETEGEEQELRLDQLVSISvltpNPHFGRVVF 80
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH