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Conserved domains on  [gi|727746236|ref|WP_033860750|]
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MULTISPECIES: lactococcin 972 family bacteriocin [Staphylococcus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Lactococcin_972 super family cl09891
Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. ...
 22-83 1.11e-08

Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.


The actual alignment was detected with superfamily member pfam09683:

Pssm-ID: 447849  Cd Length: 62  Bit Score: 46.59  E-value: 1.11e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727746236  22 EGGTWSHGVGS--KYVWSYYYHGHKGHGATAIGKyRSFSGYTRAGVKAKASATKHNcWVNRAYY 83
Cdd:pfam09683  1 GGGTWEYGVGSagGYVYSNYLHPTKCHGSTVVGT-RTVKSRAPAGKWSRASAPNAW-ANNQAYW 62
 
Name Accession Description Interval E-value
Lactococcin_972 pfam09683
Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. ...
 22-83 1.11e-08

Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.


Pssm-ID: 430750  Cd Length: 62  Bit Score: 46.59  E-value: 1.11e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727746236  22 EGGTWSHGVGS--KYVWSYYYHGHKGHGATAIGKyRSFSGYTRAGVKAKASATKHNcWVNRAYY 83
Cdd:pfam09683  1 GGGTWEYGVGSagGYVYSNYLHPTKCHGSTVVGT-RTVKSRAPAGKWSRASAPNAW-ANNQAYW 62
lactococcin_972 TIGR01653
bacteriocin, lactococcin 972 family; This model represents bacteriocins related to lactococcin ...
 1-73 5.38e-04

bacteriocin, lactococcin 972 family; This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein. [Cellular processes, Toxin production and resistance]


Pssm-ID: 273735  Cd Length: 92  Bit Score: 35.66  E-value: 5.38e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727746236   1 MLYLTLALGLSTAAYAS-TEYAEGGTWSHGVGSKYVWSYYYHGHKGHGATAIGKYRSFSGYTR-AGVKAKASATK 73
Cdd:TIGR01653 10 VSTTILATLGGLAAQVEaAQSTQGGTWWKTYGMGRHYSNYWHNKRNHWATVVNDKSGRRGKDVhAGAWAKASLNK 84
 
Name Accession Description Interval E-value
Lactococcin_972 pfam09683
Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. ...
 22-83 1.11e-08

Bacteriocin (Lactococcin_972); These sequences represent bacteriocins related to lactococcin. Members tend to be found in association with a seven transmembrane putative immunity protein.


Pssm-ID: 430750  Cd Length: 62  Bit Score: 46.59  E-value: 1.11e-08
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 727746236  22 EGGTWSHGVGS--KYVWSYYYHGHKGHGATAIGKyRSFSGYTRAGVKAKASATKHNcWVNRAYY 83
Cdd:pfam09683  1 GGGTWEYGVGSagGYVYSNYLHPTKCHGSTVVGT-RTVKSRAPAGKWSRASAPNAW-ANNQAYW 62
lactococcin_972 TIGR01653
bacteriocin, lactococcin 972 family; This model represents bacteriocins related to lactococcin ...
 1-73 5.38e-04

bacteriocin, lactococcin 972 family; This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein. [Cellular processes, Toxin production and resistance]


Pssm-ID: 273735  Cd Length: 92  Bit Score: 35.66  E-value: 5.38e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 727746236   1 MLYLTLALGLSTAAYAS-TEYAEGGTWSHGVGSKYVWSYYYHGHKGHGATAIGKYRSFSGYTR-AGVKAKASATK 73
Cdd:TIGR01653 10 VSTTILATLGGLAAQVEaAQSTQGGTWWKTYGMGRHYSNYWHNKRNHWATVVNDKSGRRGKDVhAGAWAKASLNK 84
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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