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Conserved domains on  [gi|730279861|ref|WP_033968994|]
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MULTISPECIES: YciI family protein [Pseudomonas]

Protein Classification

YciI family protein( domain architecture ID 10008017)

YciI family protein similar to Haemophilus influenzae YciI (HI0828) and Burkholderia phenoliruptrix 5-chlorohydroxyhydroquinone dehydrochlorinase, which is involved in the biodegradation of 2,4,5-trichlorophenoxyacetate

CATH:  3.30.70.1060

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YCII COG3795
5-chloro-2-hydroxyhydroquinone dehydrochlorinase TtfG, YCII superfamily [Secondary metabolites ...
 1-116 1.15e-49

5-chloro-2-hydroxyhydroquinone dehydrochlorinase TtfG, YCII superfamily [Secondary metabolites biosynthesis, transport and catabolism];


:

Pssm-ID: 443009 [Multi-domain]  Cd Length: 118  Bit Score: 153.40  E-value: 1.15e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730279861   1 MKYLCLIYFDEAKLAAVPAEELAAIVDECMTYTDQLGKAGHYIASHALQSVQTATTLRHQGGRLAMTDGPFAETKEQLGG 80
Cdd:COG3795    1 MKYLLLIYADEEAEAGLSPEEMEALMAAMGAFNEELAAAGVLVAGEGLQPPSTATTVRVRDGKPVVTDGPFAETKELLGG 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 730279861  81 FYLIEARDLNQALQIAAKIPPGRLGC-VEVRPVREWE 116
Cdd:COG3795   81 FYLIEVEDLDEAVEWAARCPAARGGGtVEVRPVMEAP 117
 
Name Accession Description Interval E-value
YCII COG3795
5-chloro-2-hydroxyhydroquinone dehydrochlorinase TtfG, YCII superfamily [Secondary metabolites ...
 1-116 1.15e-49

5-chloro-2-hydroxyhydroquinone dehydrochlorinase TtfG, YCII superfamily [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443009 [Multi-domain]  Cd Length: 118  Bit Score: 153.40  E-value: 1.15e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730279861   1 MKYLCLIYFDEAKLAAVPAEELAAIVDECMTYTDQLGKAGHYIASHALQSVQTATTLRHQGGRLAMTDGPFAETKEQLGG 80
Cdd:COG3795    1 MKYLLLIYADEEAEAGLSPEEMEALMAAMGAFNEELAAAGVLVAGEGLQPPSTATTVRVRDGKPVVTDGPFAETKELLGG 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 730279861  81 FYLIEARDLNQALQIAAKIPPGRLGC-VEVRPVREWE 116
Cdd:COG3795   81 FYLIEVEDLDEAVEWAARCPAARGGGtVEVRPVMEAP 117
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
 2-115 6.79e-29

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 100.12  E-value: 6.79e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730279861    2 KYLCLIYFDEAKLaavpaEELAAIVDECMTYTDQLGKAGHYIAShalqsvqtattlrhqgGRLAMTDGPFAETKEQLGGF 81
Cdd:pfam03795   1 LYAILAYDKPASL-----EERAALRAAHLAYLEQLKKEGVLLAS----------------GPTLVIDGPFAETKEQLGGF 59

                          90       100       110
                  ....*....|....*....|....*....|....
gi 730279861   82 YLIEARDLNQALQIAAKIPPGRLGCVEVRPVREW 115
Cdd:pfam03795  60 YIIEAADLDEAIAIAAGDPFVAAGLYEERPVKEF 93
 
Name Accession Description Interval E-value
YCII COG3795
5-chloro-2-hydroxyhydroquinone dehydrochlorinase TtfG, YCII superfamily [Secondary metabolites ...
 1-116 1.15e-49

5-chloro-2-hydroxyhydroquinone dehydrochlorinase TtfG, YCII superfamily [Secondary metabolites biosynthesis, transport and catabolism];


Pssm-ID: 443009 [Multi-domain]  Cd Length: 118  Bit Score: 153.40  E-value: 1.15e-49
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730279861   1 MKYLCLIYFDEAKLAAVPAEELAAIVDECMTYTDQLGKAGHYIASHALQSVQTATTLRHQGGRLAMTDGPFAETKEQLGG 80
Cdd:COG3795    1 MKYLLLIYADEEAEAGLSPEEMEALMAAMGAFNEELAAAGVLVAGEGLQPPSTATTVRVRDGKPVVTDGPFAETKELLGG 80

                         90       100       110
                 ....*....|....*....|....*....|....*..
gi 730279861  81 FYLIEARDLNQALQIAAKIPPGRLGC-VEVRPVREWE 116
Cdd:COG3795   81 FYLIEVEDLDEAVEWAARCPAARGGGtVEVRPVMEAP 117
YCII pfam03795
YCII-related domain; The majority of proteins in this family consist of a single copy of this ...
 2-115 6.79e-29

YCII-related domain; The majority of proteins in this family consist of a single copy of this domain, though it is also found as a repeat. A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This family also now includes the family formerly known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Swiss:Q9A8M4. Suggesting that this domain plays a role in transcription initiation (Bateman A per. obs.). This domain is named after the most conserved motif in the alignment.


Pssm-ID: 397734  Cd Length: 94  Bit Score: 100.12  E-value: 6.79e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 730279861    2 KYLCLIYFDEAKLaavpaEELAAIVDECMTYTDQLGKAGHYIAShalqsvqtattlrhqgGRLAMTDGPFAETKEQLGGF 81
Cdd:pfam03795   1 LYAILAYDKPASL-----EERAALRAAHLAYLEQLKKEGVLLAS----------------GPTLVIDGPFAETKEQLGGF 59

                          90       100       110
                  ....*....|....*....|....*....|....
gi 730279861   82 YLIEARDLNQALQIAAKIPPGRLGCVEVRPVREW 115
Cdd:pfam03795  60 YIIEAADLDEAIAIAAGDPFVAAGLYEERPVKEF 93
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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