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Conserved domains on  [gi|730351886|ref|WP_033995585|]
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MULTISPECIES: anti-CRISPR protein [Pseudomonas]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
AcrIF5 cd22564
Anti-CRISPR type I subtype F5; AcrIF5, also known as AcrF5, is a phage anti-CRISPR (Acr) ...
1-79 1.48e-38

Anti-CRISPR type I subtype F5; AcrIF5, also known as AcrF5, is a phage anti-CRISPR (Acr) protein that has been shown to mediate inhibition of the type I-F CRISPR-Cas system of Pseudomonas aeruginosa. AcrIF5 is a weak anti-CRISPR and its gene always co-occurs with the AcrIF3 gene; however, the AcrIF3 gene often occurs in the absence of the AcrIF5 gene. The type I-F Csy complex is a crRNA-guided surveillance complex composed of a crRNA and nine Cas proteins (one Cas8f, one Cas5f, one Cas6f, and six Cas7f), which recruits a nuclease-helicase protein Cas3 for target degradation. CRISPR-Cas immune systems are used by certain prokaryotes and archaea to resist the invasion of foreign nucleic acids such as phages or plasmids. Anti-CRISPRs are small proteins which are the natural inhibitors for CRISPR-Cas systems; encoded on bacterial and archaeal viruses, they allow the virus to evade host CRISPR-Cas systems. The CRISPR-Cas-mediated adaptive immune response can be divided into three steps, including the acquisition of spacer derived from invading nucleic acids, crRNA processing, and target degradation. Theoretically, Acr proteins could suppress any step to disrupt the CRISPR-Cas system. Acr proteins are diverse with no common sequence or structural motif, which inhibit a wide range of CRISPR-Cas systems via various inhibition mechanisms. Weak and strong Acr-phages often cooperate to overcome CRISPR resistance, with a first phage blocking the host CRISPR-Cas immune system to allow a second Acr-phage to successfully replicate which leads to epidemiological tipping points. CRISPR-Cas systems are divided into two classes (1 and 2) and six types (class 1: types I, III and IV; class 2: types II, V and VI). Class 1 systems utilize RNA-guided complexes consisting of multiple Cas proteins as the effector proteins to recognize and cleave target DNA. Type I CRISPR-Cas systems are the most widespread in nature, and the Cas protein composition of the employed CRISPR ribonucleoprotein (crRNP) complexes differs between seven subtypes (A to F, U). Acr families are named for their type and subtype which are numbered sequentially as they are discovered.


:

Pssm-ID: 412105  Cd Length: 79  Bit Score: 122.58  E-value: 1.48e-38
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730351886  1 MSRPTVVTVTEVSWNPGSYEVNVEQNGKMVVGRTRAGSDPGAAAAKAMQMAMEWGDPNYVILGSKKVLAFIPEQLRVKM 79
Cdd:cd22564   1 MSRPTVVTVTEVSWNPGSYEVNVEQDGKMVVGRARAGSDPGAAAAKAMQMAMEWGNPNYVILGSNKVLAFIPEQLRVKM 79
 
Name Accession Description Interval E-value
AcrIF5 cd22564
Anti-CRISPR type I subtype F5; AcrIF5, also known as AcrF5, is a phage anti-CRISPR (Acr) ...
1-79 1.48e-38

Anti-CRISPR type I subtype F5; AcrIF5, also known as AcrF5, is a phage anti-CRISPR (Acr) protein that has been shown to mediate inhibition of the type I-F CRISPR-Cas system of Pseudomonas aeruginosa. AcrIF5 is a weak anti-CRISPR and its gene always co-occurs with the AcrIF3 gene; however, the AcrIF3 gene often occurs in the absence of the AcrIF5 gene. The type I-F Csy complex is a crRNA-guided surveillance complex composed of a crRNA and nine Cas proteins (one Cas8f, one Cas5f, one Cas6f, and six Cas7f), which recruits a nuclease-helicase protein Cas3 for target degradation. CRISPR-Cas immune systems are used by certain prokaryotes and archaea to resist the invasion of foreign nucleic acids such as phages or plasmids. Anti-CRISPRs are small proteins which are the natural inhibitors for CRISPR-Cas systems; encoded on bacterial and archaeal viruses, they allow the virus to evade host CRISPR-Cas systems. The CRISPR-Cas-mediated adaptive immune response can be divided into three steps, including the acquisition of spacer derived from invading nucleic acids, crRNA processing, and target degradation. Theoretically, Acr proteins could suppress any step to disrupt the CRISPR-Cas system. Acr proteins are diverse with no common sequence or structural motif, which inhibit a wide range of CRISPR-Cas systems via various inhibition mechanisms. Weak and strong Acr-phages often cooperate to overcome CRISPR resistance, with a first phage blocking the host CRISPR-Cas immune system to allow a second Acr-phage to successfully replicate which leads to epidemiological tipping points. CRISPR-Cas systems are divided into two classes (1 and 2) and six types (class 1: types I, III and IV; class 2: types II, V and VI). Class 1 systems utilize RNA-guided complexes consisting of multiple Cas proteins as the effector proteins to recognize and cleave target DNA. Type I CRISPR-Cas systems are the most widespread in nature, and the Cas protein composition of the employed CRISPR ribonucleoprotein (crRNP) complexes differs between seven subtypes (A to F, U). Acr families are named for their type and subtype which are numbered sequentially as they are discovered.


Pssm-ID: 412105  Cd Length: 79  Bit Score: 122.58  E-value: 1.48e-38
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730351886  1 MSRPTVVTVTEVSWNPGSYEVNVEQNGKMVVGRTRAGSDPGAAAAKAMQMAMEWGDPNYVILGSKKVLAFIPEQLRVKM 79
Cdd:cd22564   1 MSRPTVVTVTEVSWNPGSYEVNVEQDGKMVVGRARAGSDPGAAAAKAMQMAMEWGNPNYVILGSNKVLAFIPEQLRVKM 79
 
Name Accession Description Interval E-value
AcrIF5 cd22564
Anti-CRISPR type I subtype F5; AcrIF5, also known as AcrF5, is a phage anti-CRISPR (Acr) ...
1-79 1.48e-38

Anti-CRISPR type I subtype F5; AcrIF5, also known as AcrF5, is a phage anti-CRISPR (Acr) protein that has been shown to mediate inhibition of the type I-F CRISPR-Cas system of Pseudomonas aeruginosa. AcrIF5 is a weak anti-CRISPR and its gene always co-occurs with the AcrIF3 gene; however, the AcrIF3 gene often occurs in the absence of the AcrIF5 gene. The type I-F Csy complex is a crRNA-guided surveillance complex composed of a crRNA and nine Cas proteins (one Cas8f, one Cas5f, one Cas6f, and six Cas7f), which recruits a nuclease-helicase protein Cas3 for target degradation. CRISPR-Cas immune systems are used by certain prokaryotes and archaea to resist the invasion of foreign nucleic acids such as phages or plasmids. Anti-CRISPRs are small proteins which are the natural inhibitors for CRISPR-Cas systems; encoded on bacterial and archaeal viruses, they allow the virus to evade host CRISPR-Cas systems. The CRISPR-Cas-mediated adaptive immune response can be divided into three steps, including the acquisition of spacer derived from invading nucleic acids, crRNA processing, and target degradation. Theoretically, Acr proteins could suppress any step to disrupt the CRISPR-Cas system. Acr proteins are diverse with no common sequence or structural motif, which inhibit a wide range of CRISPR-Cas systems via various inhibition mechanisms. Weak and strong Acr-phages often cooperate to overcome CRISPR resistance, with a first phage blocking the host CRISPR-Cas immune system to allow a second Acr-phage to successfully replicate which leads to epidemiological tipping points. CRISPR-Cas systems are divided into two classes (1 and 2) and six types (class 1: types I, III and IV; class 2: types II, V and VI). Class 1 systems utilize RNA-guided complexes consisting of multiple Cas proteins as the effector proteins to recognize and cleave target DNA. Type I CRISPR-Cas systems are the most widespread in nature, and the Cas protein composition of the employed CRISPR ribonucleoprotein (crRNP) complexes differs between seven subtypes (A to F, U). Acr families are named for their type and subtype which are numbered sequentially as they are discovered.


Pssm-ID: 412105  Cd Length: 79  Bit Score: 122.58  E-value: 1.48e-38
                        10        20        30        40        50        60        70
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 730351886  1 MSRPTVVTVTEVSWNPGSYEVNVEQNGKMVVGRTRAGSDPGAAAAKAMQMAMEWGDPNYVILGSKKVLAFIPEQLRVKM 79
Cdd:cd22564   1 MSRPTVVTVTEVSWNPGSYEVNVEQDGKMVVGRARAGSDPGAAAAKAMQMAMEWGNPNYVILGSNKVLAFIPEQLRVKM 79
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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