|
Name |
Accession |
Description |
Interval |
E-value |
| DppD |
COG0444 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-271 |
5.45e-140 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440213 [Multi-domain] Cd Length: 320 Bit Score: 396.73 E-value: 5.45e-140
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArIEADTLRFGDIDLLKASAKE 83
Cdd:COG0444 1 LLEVRNLKVYFPTRRGVVKAVDGVSFDVRRgETLGLVGESGSGKSTLARAILGLLPPPG-ITSGEILFDGEDLLKLSEKE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQRV 163
Cdd:COG0444 80 LRKIRGREIQMIFQDPMTSLNPVMTVGDQIAEPLRIHGGLSKAEARERAIELLERVGLPDPERRLDRYPHELSGGMRQRV 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANL- 242
Cdd:COG0444 160 MIARALALEPKLLIADEPTTALDVTIQAQILNLLKDLQRELGLAILFITHDLGVVAEIADRVAVMYAGRIVEEGPVEELf 239
|
250 260
....*....|....*....|....*....
gi 736475199 243 KEAKHPYTQGLLNCLPQIGGHRHPLPVLE 271
Cdd:COG0444 240 ENPRHPYTRALLSSIPRLDPDGRRLIPIP 268
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
1-275 |
4.80e-124 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 363.62 E-value: 4.80e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEADTLRFGDIDLLKA 79
Cdd:COG4172 2 MSMPLLSVEDLSVAFGQGGGTVEAVKGVSFDIAAgETLALVGESGSGKSVTALSILRLLPDPAAHPSGSILFDGQDLLGL 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGM 159
Cdd:COG4172 82 SERELRRIRGNRIAMIFQEPMTSLNPLHTIGKQIAEVLRLHRGLSGAAARARALELLERVGIPDPERRLDAYPHQLSGGQ 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELAS 239
Cdd:COG4172 162 RQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKDLQRELGMALLLITHDLGVVRRFADRVAVMRQGEIVEQGPT 241
|
250 260 270
....*....|....*....|....*....|....*..
gi 736475199 240 ANLKEA-KHPYTQGLLNCLPqiggHRHPLPVLERKPE 275
Cdd:COG4172 242 AELFAApQHPYTRKLLAAEP----RGDPRPVPPDAPP 274
|
|
| ABC_NikE_OppD_transporters |
cd03257 |
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter ... |
5-236 |
5.07e-105 |
|
ATP-binding cassette domain of nickel/oligopeptides specific transporters; The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Pssm-ID: 213224 [Multi-domain] Cd Length: 228 Bit Score: 304.43 E-value: 5.07e-105
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDIDLLKASAKE 83
Cdd:cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKgETLGLVGESGSGKSTLARAILGL----LKPTSGSIIFDGKDLLKLSRRL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLmRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQRV 163
Cdd:cd03257 77 RKI-RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIH-GKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV 154
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227
|
|
| oppD |
PRK09473 |
oligopeptide transporter ATP-binding component; Provisional |
1-274 |
1.49e-97 |
|
oligopeptide transporter ATP-binding component; Provisional
Pssm-ID: 181888 [Multi-domain] Cd Length: 330 Bit Score: 289.32 E-value: 1.49e-97
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEAdTLRFGDIDLLKA 79
Cdd:PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAgETLGIVGESGSGKSQTAFALMGLLAANGRIGG-SATFNGREILNL 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGM 159
Cdd:PRK09473 87 PEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGM 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVeELAS 239
Cdd:PRK09473 167 RQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGN 245
|
250 260 270
....*....|....*....|....*....|....*..
gi 736475199 240 AN--LKEAKHPYTQGLLNCLPQIGGHRHPLPVLERKP 274
Cdd:PRK09473 246 ARdvFYQPSHPYSIGLLNAVPRLDAEGESLLTIPGNP 282
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
1-260 |
1.26e-91 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 280.25 E-value: 1.26e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTR-TGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLK 78
Cdd:COG1123 256 AAEPLLEVRNLSKRYPVRgKGGVRAVDDVSLTLRRgETLGLVGESGSGKSTLARLLLGLLR----PTSGSILFDGKDLTK 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERRLMRgKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIrdPERVFDLFPHEVSGG 158
Cdd:COG1123 332 LSRRSLRELR-RRVQMVFQDPYSSLNPRMTVGDIIAEPLRLHGLLSRAERRERVAELLERVGL--PPDLADRYPHELSGG 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELA 238
Cdd:COG1123 409 QRQRVAIARALALEPKLLILDEPTSALDVSVQAQILNLLRDLQRELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEDGP 488
|
250 260
....*....|....*....|...
gi 736475199 239 SANLKEA-KHPYTQGLLNCLPQI 260
Cdd:COG1123 489 TEEVFANpQHPYTRALLAAVPSL 511
|
|
| dppD |
PRK11022 |
dipeptide transporter ATP-binding subunit; Provisional |
4-259 |
4.83e-89 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 182906 [Multi-domain] Cd Length: 326 Bit Score: 267.76 E-value: 4.83e-89
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEADTLRFGDIDLLKASAK 82
Cdd:PRK11022 2 ALLNVDKLSVHFGDESAPFRAVDRISYSVKQgEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEK 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQR 162
Cdd:PRK11022 82 ERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE-LASAN 241
Cdd:PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETgKAHDI 241
|
250
....*....|....*...
gi 736475199 242 LKEAKHPYTQGLLNCLPQ 259
Cdd:PRK11022 242 FRAPRHPYTQALLRALPE 259
|
|
| GsiA |
COG1123 |
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain ... |
3-275 |
4.56e-87 |
|
ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440740 [Multi-domain] Cd Length: 514 Bit Score: 268.70 E-value: 4.56e-87
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFPTRTglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIeADTLRFGDIDLLKASA 81
Cdd:COG1123 2 TPLLEVRDLSVRYPGGD--VPAVDGVSLTIAPgETVALVGESGSGKSTLALALMGLLPHGGRI-SGEVLLDGRDLLELSE 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERrlmrGKRMAMILQDPKYSLNPVmTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQ 161
Cdd:COG1123 79 ALR----GRRIGMVFQDPMTQLNPV-TVGDQIAEALENL-GLSRAEARARVLELLEAVGL---ERRLDRYPHQLSGGQRQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASAN 241
Cdd:COG1123 150 RVAIAMALALDPDLLIADEPTTALDVTTQAEILDLLRELQRERGTTVLLITHDLGVVAEIADRVVVMDDGRIVEDGPPEE 229
|
250 260 270
....*....|....*....|....*....|....
gi 736475199 242 LKEAkhpytQGLLNCLPQIGGHRHPLPVLERKPE 275
Cdd:COG1123 230 ILAA-----PQALAAVPRLGAARGRAAPAAAAAE 258
|
|
| SapD |
COG4170 |
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms]; |
5-270 |
1.42e-85 |
|
ABC-type antimicrobial peptide export system, ATPase component SapD [Defense mechanisms];
Pssm-ID: 443330 [Multi-domain] Cd Length: 331 Bit Score: 258.68 E-value: 1.42e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEADTLRFGDIDLLKASAKE 83
Cdd:COG4170 3 LLDIRNLTIEIDTPQGRVKAVDRVSLTLNEgEIRGLVGESGSGKSLIAKAICGITKDNWHVTADRFRWNGIDLLKLSPRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGS-----SEARQRTLAMLEAVQIRDPERVFDLFPHEVSGG 158
Cdd:COG4170 83 RRKIIGREIAMIFQEPSSCLDPSAKIGDQLIEAIPSWTFKGKwwqrfKWRKKRAIELLHRVGIKDHKDIMNSYPHELTEG 162
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEela 238
Cdd:COG4170 163 ECQKVMIAMAIANQPRLLIADEPTNAMESTTQAQIFRLLARLNQLQGTSILLISHDLESISQWADTITVLYCGQTVE--- 239
|
250 260 270
....*....|....*....|....*....|....*....
gi 736475199 239 SAN----LKEAKHPYTQGLLNCLPQIGG---HRHPLPVL 270
Cdd:COG4170 240 SGPteqiLKSPHHPYTKALLRSMPDFRQplpHKSRLNTL 278
|
|
| AppF |
COG4608 |
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; ... |
1-260 |
1.52e-84 |
|
ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443658 [Multi-domain] Cd Length: 329 Bit Score: 256.20 E-value: 1.52e-84
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGL-------VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEAD--TLR 70
Cdd:COG4608 3 MAEPLLEVRDLKKHFPVRGGLfgrtvgvVKAVDGVSFDIRRgETLGLVGESGCGKSTLGRLLLRL------EEPTsgEIL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 71 FGDIDLLKASAKERRLMRgKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRdPErVFDL 150
Cdd:COG4608 77 FDGQDITGLSGRELRPLR-RRMQMVFQDPYASLNPRMTVGDIIAEPLRIHGLASKAERRERVAELLELVGLR-PE-HADR 153
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 FPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYA 230
Cdd:COG4608 154 YPHEFSGGQRQRIGIARALALNPKLIVCDEPVSALDVSIQAQVLNLLEDLQDELGLTYLFISHDLSVVRHISDRVAVMYL 233
|
250 260 270
....*....|....*....|....*....|..
gi 736475199 231 GKVVeELASAN--LKEAKHPYTQGLLNCLPQI 260
Cdd:COG4608 234 GKIV-EIAPRDelYARPLHPYTQALLSAVPVP 264
|
|
| YejF |
COG4172 |
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites ... |
5-254 |
2.78e-83 |
|
ABC-type microcin C transport system, duplicated ATPase component YejF [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443332 [Multi-domain] Cd Length: 533 Bit Score: 259.23 E-value: 2.78e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGL-------VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIeadtlRFGDIDL 76
Cdd:COG4172 275 LLEARDLKVWFPIKRGLfrrtvghVKAVDGVSLTLRRgETLGLVGESGSGKSTLGLALLRLIPSEGEI-----RFDGQDL 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 77 LKASAKERRLMRgKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEAR-QRTLAMLEAVQIrDPErVFDLFPHEV 155
Cdd:COG4172 350 DGLSRRALRPLR-RRMQVVFQDPFGSLSPRMTVGQIIAEGLRVHGPGLSAAERrARVAEALEEVGL-DPA-ARHRYPHEF 426
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:COG4172 427 SGGQRQRIAIARALILEPKLLVLDEPTSALDVSVQAQILDLLRDLQREHGLAYLFISHDLAVVRALAHRVMVMKDGKVVE 506
|
250 260
....*....|....*....|
gi 736475199 236 ELASANLKEA-KHPYTQGLL 254
Cdd:COG4172 507 QGPTEQVFDApQHPYTRALL 526
|
|
| DppF |
COG1124 |
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid ... |
5-259 |
9.21e-82 |
|
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism];
Pssm-ID: 440741 [Multi-domain] Cd Length: 248 Bit Score: 246.25 E-value: 9.21e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDIDLLKASAKE 83
Cdd:COG1124 1 MLEVRNLSVSYGQGGRRVPVLKDVSLEVAPgESFGLVGESGSGKSTLLRALAGL----ERPWSGEVTFDGRPVTRRRRKA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgKRMAMILQDPKYSLNPVMTIGRQIMETLRTHekiGSSEARQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQRV 163
Cdd:COG1124 77 FR----RRVQMVFQDPYASLHPRHTVDRILAEPLRIH---GLPDREERIAELLEQVGL--PPSFLDRYPHQLSGGQRQRV 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANLK 243
Cdd:COG1124 148 AIARALILEPELLLLDEPTSALDVSVQAEILNLLKDLREERGLTYLFVSHDLAVVAHLCDRVAVMQNGRIVEELTVADLL 227
|
250
....*....|....*..
gi 736475199 244 E-AKHPYTQGLLNCLPQ 259
Cdd:COG1124 228 AgPKHPYTRELLAASLA 244
|
|
| nickel_nikD |
TIGR02770 |
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a ... |
24-254 |
7.62e-73 |
|
nickel import ATP-binding protein NikD; This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131817 [Multi-domain] Cd Length: 230 Bit Score: 223.01 E-value: 7.62e-73
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGRER-LGIVGESGSGKSQTGRAIMGLTPKNARIEADTLRFGDIDLLKASakerrlMRGKRMAMILQDPKYS 102
Cdd:TIGR02770 1 LVQDLNLSLKRGEvLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLS------IRGRHIATIMQNPRTA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 103 LNPVMTIGRQIMETLRTHEKIgSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPT 182
Cdd:TIGR02770 75 FNPLFTMGNHAIETLRSLGKL-SKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPT 153
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 183 SALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANL-KEAKHPYTQGLL 254
Cdd:TIGR02770 154 TDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIfYNPKHETTRKLL 226
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
1-269 |
1.41e-71 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 228.82 E-value: 1.41e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARI-EADTLRFGDIDLLK 78
Cdd:PRK15134 1 MTQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAgETLALVGESGSGKSVTALSILRLLPSPPVVyPSGDIRFHGESLLH 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGG 158
Cdd:PRK15134 81 ASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELA 238
Cdd:PRK15134 161 ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
|
250 260 270
....*....|....*....|....*....|..
gi 736475199 239 SANLKEA-KHPYTQGLLNCLPQigGHRHPLPV 269
Cdd:PRK15134 241 AATLFSApTHPYTQKLLNSEPS--GDPVPLPE 270
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
2-268 |
2.20e-71 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 230.90 E-value: 2.20e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 2 SASLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKN-ARIEADTLRFGD-----I 74
Cdd:PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRgETLAIVGESGSGKSVTALALMRLLEQAgGLVQCDKMLLRRrsrqvI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 75 DLLKASAKERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHE 154
Cdd:PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQ 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK10261 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV 248
|
250 260 270
....*....|....*....|....*....|....*.
gi 736475199 235 EELASANLKEA-KHPYTQGLLNCLPQIGGHR-HPLP 268
Cdd:PRK10261 249 ETGSVEQIFHApQHPYTRALLAAVPQLGAMKgLDYP 284
|
|
| PRK15079 |
PRK15079 |
oligopeptide ABC transporter ATP-binding protein OppF; Provisional |
5-272 |
1.65e-69 |
|
oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Pssm-ID: 185037 [Multi-domain] Cd Length: 331 Bit Score: 218.04 E-value: 1.65e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTG---------LVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNariEADTLRFGDi 74
Cdd:PRK15079 8 LLEVADLKVHFDIKDGkqwfwqppkTLKAVDGVTLRLYEgETLGVVGESGCGKSTFARAIIGLVKAT---DGEVAWLGK- 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 75 DLLKASAKERRLMRgKRMAMILQDPKYSLNPVMTIGRQIMETLRT-HEKIGSSEARQRTLAMLEAVQIRdpERVFDLFPH 153
Cdd:PRK15079 84 DLLGMKDDEWRAVR-SDIQMIFQDPLASLNPRMTIGEIIAEPLRTyHPKLSRQEVKDRVKAMMLKVGLL--PNLINRYPH 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHA 240
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 736475199 234 VeELAS--ANLKEAKHPYTQGLLNCLPQigghrhPLPVLER 272
Cdd:PRK15079 241 V-ELGTydEVYHNPLHPYTKALMSAVPI------PDPDLER 274
|
|
| PRK15093 |
PRK15093 |
peptide ABC transporter ATP-binding protein SapD; |
5-268 |
2.51e-67 |
|
peptide ABC transporter ATP-binding protein SapD;
Pssm-ID: 185049 [Multi-domain] Cd Length: 330 Bit Score: 212.36 E-value: 2.51e-67
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEADTLRFGDIDLLKASAKE 83
Cdd:PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEgEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETL-------RTHEKIGSSeaRQRTLAMLEAVQIRDPERVFDLFPHEVS 156
Cdd:PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIpgwtykgRWWQRFGWR--KRRAIELLHRVGIKDHKDAMRSFPYELT 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:PRK15093 161 EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVET 240
|
250 260 270
....*....|....*....|....*....|...
gi 736475199 237 LASANLKEA-KHPYTQGLLNCLPQIGghrHPLP 268
Cdd:PRK15093 241 APSKELVTTpHHPYTQALIRAIPDFG---SAMP 270
|
|
| dppF |
PRK11308 |
dipeptide transporter ATP-binding subunit; Provisional |
1-266 |
3.26e-62 |
|
dipeptide transporter ATP-binding subunit; Provisional
Pssm-ID: 236898 [Multi-domain] Cd Length: 327 Bit Score: 199.04 E-value: 3.26e-62
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGL------VEAVRGVSFTLGRER-LGIVGESGSGKSQTGRAimgLTpknaRIEADT---LR 70
Cdd:PRK11308 1 SQQPLLQAIDLKKHYPVKRGLfkperlVKALDGVSFTLERGKtLAVVGESGCGKSTLARL---LT----MIETPTggeLY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 71 FGDIDLLKASAKERRLMRgKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRdPERvFDL 150
Cdd:PRK11308 74 YQGQDLLKADPEAQKLLR-QKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLR-PEH-YDR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 FPHEVSGGMGQRVMIA--MMLvcGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVM 228
Cdd:PRK11308 151 YPHMFSGGQRQRIAIAraLML--DPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVM 228
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 736475199 229 YAGKVVEELASANLKEA-KHPYTQGLLNCLPQIG-GHRHP 266
Cdd:PRK11308 229 YLGRCVEKGTKEQIFNNpRHPYTQALLSATPRLNpDDRRE 268
|
|
| nikD |
PRK10418 |
nickel transporter ATP-binding protein NikD; Provisional |
6-254 |
1.11e-56 |
|
nickel transporter ATP-binding protein NikD; Provisional
Pssm-ID: 236688 [Multi-domain] Cd Length: 254 Bit Score: 182.59 E-value: 1.11e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPtrtglVEAVRGVSFTLGRER-LGIVGESGSGKSQTGRAIMGLTPKNARIEADTLRFGDIDLLKASaker 84
Cdd:PRK10418 5 IELRNIALQAA-----QPLVHGVSLTLQRGRvLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCA---- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 rlMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRThekIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQRVM 164
Cdd:PRK10418 76 --LRGRKIATIMQNPRSAFNPLHTMHTHARETCLA---LGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMM 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANLKE 244
Cdd:PRK10418 151 IALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFN 230
|
250
....*....|.
gi 736475199 245 A-KHPYTQGLL 254
Cdd:PRK10418 231 ApKHAVTRSLV 241
|
|
| PRK15134 |
PRK15134 |
microcin C ABC transporter ATP-binding protein YejF; Provisional |
2-254 |
4.59e-53 |
|
microcin C ABC transporter ATP-binding protein YejF; Provisional
Pssm-ID: 237917 [Multi-domain] Cd Length: 529 Bit Score: 180.29 E-value: 4.59e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 2 SASLLTVENLRVSFPTRTGLV-------EAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEadtlrFGD 73
Cdd:PRK15134 272 ASPLLDVEQLQVAFPIRKGILkrtvdhnVVVKNISFTLRPgETLGLVGESGSGKSTTGLALLRLINSQGEIW-----FDG 346
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 74 IDLLKASAKERRLMRgKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEAR-QRTLAMLEAVQIrDPERVFDlFP 152
Cdd:PRK15134 347 QPLHNLNRRQLLPVR-HRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQReQQVIAVMEEVGL-DPETRHR-YP 423
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 153 HEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:PRK15134 424 AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGE 503
|
250 260
....*....|....*....|...
gi 736475199 233 VVEELASANLKEA-KHPYTQGLL 254
Cdd:PRK15134 504 VVEQGDCERVFAApQQEYTRQLL 526
|
|
| SapF |
COG4167 |
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms]; |
1-255 |
4.09e-50 |
|
ABC-type antimicrobial peptide export system, ATPase component SapF [Defense mechanisms];
Pssm-ID: 443328 [Multi-domain] Cd Length: 265 Bit Score: 165.78 E-value: 4.09e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSAsLLTVENLRVSFPTRTGL-----VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA---RIEADTLRF 71
Cdd:COG4167 1 MSA-LLEVRNLSKTFKYRTGLfrrqqFEAVKPVSFTLEAgQTLAIIGENGSGKSTLAKMLAGIIEPTSgeiLINGHKLEY 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 72 GDIDLlkasakerrlmRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRdPERVfDLF 151
Cdd:COG4167 80 GDYKY-----------RCKHIRMIFQDPNTSLNPRLNIGQILEEPLRLNTDLTAEEREERIFATLRLVGLL-PEHA-NFY 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 152 PHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:COG4167 147 PHMLSSGQKQRVALARALILQPKIIIADEALAALDMSVRSQIINLMLELQEKLGISYIYVSQHLGIVKHISDKVLVMHQG 226
|
250 260
....*....|....*....|....*
gi 736475199 232 KVVEELASAN-LKEAKHPYTQGLLN 255
Cdd:COG4167 227 EVVEYGKTAEvFANPQHEVTKRLIE 251
|
|
| LolD |
COG1136 |
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis]; |
3-238 |
1.75e-48 |
|
ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440751 [Multi-domain] Cd Length: 227 Bit Score: 160.59 E-value: 1.75e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSqTGRAIMGL--TPKNARIeadtlRFGDIDLLKA 79
Cdd:COG1136 2 SPLLELRNLTKSYGTGEGEVTALRGVSLSIEAgEFVAIVGPSGSGKS-TLLNILGGldRPTSGEV-----LIDGQDISSL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRLMRGKRMAMILQDpkYSLNPVMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIRDpeRVfDLFPHEVSGGM 159
Cdd:COG1136 76 SERELARLRRRHIGFVFQF--FNLLPELTALENVALPLLLA-GVSRKERRERARELLERVGLGD--RL-DHRPSQLSGGQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLvSSFCDRVLVMYAGKVVEELA 238
Cdd:COG1136 150 QQRVAIARALVNRPKLILADEPTGNLDSKTGEEVLELLRELNRELGTTIVMVTHDPEL-AARADRVIRLRDGRIVSDER 227
|
|
| PRK10261 |
PRK10261 |
glutathione transporter ATP-binding protein; Provisional |
5-270 |
3.71e-48 |
|
glutathione transporter ATP-binding protein; Provisional
Pssm-ID: 182342 [Multi-domain] Cd Length: 623 Bit Score: 168.88 E-value: 3.71e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGL-------VEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGD--I 74
Cdd:PRK10261 313 ILQVRNLVTRFPLRSGLlnrvtreVHAVEKVSFDLwPGETLSLVGESGSGKSTTGRALLRLV----ESQGGEIIFNGqrI 388
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 75 DLLKASaKERRLMRGkrMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRdPERVFDlFPHE 154
Cdd:PRK10261 389 DTLSPG-KLQALRRD--IQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLL-PEHAWR-YPHE 463
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK10261 464 FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIV 543
|
250 260 270
....*....|....*....|....*....|....*...
gi 736475199 235 E-ELASANLKEAKHPYTQGLLNCLPQIG-GHRHPLPVL 270
Cdd:PRK10261 544 EiGPRRAVFENPQHPYTRKLMAAVPVADpSRQRPQRVL 581
|
|
| nickel_nikE |
TIGR02769 |
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a ... |
4-275 |
8.38e-48 |
|
nickel import ATP-binding protein NikE; This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. [Transport and binding proteins, Cations and iron carrying compounds]
Pssm-ID: 131816 [Multi-domain] Cd Length: 265 Bit Score: 159.97 E-value: 8.38e-48
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENlrVSFPTRTGLVEAVR-------GVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDID 75
Cdd:TIGR02769 1 SLLEVRD--VTHTYRTGGLFGAKqrapvltNVSLSIEEgETVGLLGRSGCGKSTLARLLLGL----EKPAQGTVSFRGQD 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 76 LLKASAKERRLMRgKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDpeRVFDLFPHEV 155
Cdd:TIGR02769 75 LYQLDRKQRRAFR-RDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRS--EDADKLPRQL 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:TIGR02769 152 SGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE 231
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 736475199 236 ELASANLKEAKHPYTQGLLNC-LPqigghrhPLPVLERKPE 275
Cdd:TIGR02769 232 ECDVAQLLSFKHPAGRNLQSAvLP-------EHPVRRSITT 265
|
|
| phnK |
PRK11701 |
phosphonate C-P lyase system protein PhnK; Provisional |
1-253 |
4.58e-47 |
|
phosphonate C-P lyase system protein PhnK; Provisional
Pssm-ID: 183280 [Multi-domain] Cd Length: 258 Bit Score: 157.78 E-value: 4.58e-47
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLveavRGVSFTL-GRERLGIVGESGSGKSQTGRAIMG-LTPKNARIEADTLRFGDIDLLK 78
Cdd:PRK11701 2 MDQPLLSVRGLTKLYGPRKGC----RDVSFDLyPGEVLGIVGESGSGKTTLLNALSArLAPDAGEVHYRMRDGQLRDLYA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETL-----RTHEKIgsseaRQRTLAMLEAVQIrDPERVFDLfPH 153
Cdd:PRK11701 78 LSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLmavgaRHYGDI-----RATAGDWLERVEI-DAARIDDL-PT 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDL---RLVSsfcDRVLVMYA 230
Cdd:PRK11701 151 TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLavaRLLA---HRLLVMKQ 227
|
250 260
....*....|....*....|....
gi 736475199 231 GKVVEE-LASANLKEAKHPYTQGL 253
Cdd:PRK11701 228 GRVVESgLTDQVLDDPQHPYTQLL 251
|
|
| nikE |
PRK10419 |
nickel ABC transporter ATP-binding protein NikE; |
4-275 |
3.19e-46 |
|
nickel ABC transporter ATP-binding protein NikE;
Pssm-ID: 236689 [Multi-domain] Cd Length: 268 Bit Score: 156.00 E-value: 3.19e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTrTGLVEA------VRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDID 75
Cdd:PRK10419 2 TLLNVSGLSHHYAH-GGLSGKhqhqtvLNNVSLSLKSgETVALLGRSGCGKSTLARLLVGLeSPSQGNV-----SWRGEP 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 76 LLKASAKERRLMRGKrMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDpeRVFDLFPHEV 155
Cdd:PRK10419 76 LAKLNRAQRKAFRRD-IQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDD--SVLDKRPPQL 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK10419 153 SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
250 260 270 280
....*....|....*....|....*....|....*....|.
gi 736475199 236 ELASANLKEAKHPYTQGLLNC-LPqigghrhPLPVLERKPE 275
Cdd:PRK10419 233 TQPVGDKLTFSSPAGRVLQNAvLP-------AFPVRRRTTE 266
|
|
| ABC_MJ0796_LolCDE_FtsE |
cd03255 |
ATP-binding cassette domain of the transporters involved in export of lipoprotein and ... |
6-233 |
3.82e-46 |
|
ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and Cell division ATP-binding protein FtsE; This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Pssm-ID: 213222 [Multi-domain] Cd Length: 218 Bit Score: 154.18 E-value: 3.82e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDIDLLKASAKER 84
Cdd:cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKgEFVAIVGPSGSGKSTLLNILGGL----DRPTSGEVRVDGTDISKLSEKEL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRGKRMAMILQDpkYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDperVFDLFPHEVSGGMGQRVM 164
Cdd:cd03255 77 AAFRRRHIGFVFQS--FNLLPDLTALENVELPLL-LAGVPKKERRERAEELLERVGLGD---RLNHYPSELSGGQQQRVA 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVsSFCDRVLVMYAGKV 233
Cdd:cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELA-EYADRIIELRDGKI 218
|
|
| EcfA2 |
COG1122 |
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and ... |
6-234 |
5.06e-43 |
|
Energy-coupling factor transporter ATP-binding protein EcfA2 [Inorganic ion transport and metabolism, General function prediction only];
Pssm-ID: 440739 [Multi-domain] Cd Length: 230 Bit Score: 146.32 E-value: 5.06e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:COG1122 1 IELENLSFSYPGGT---PALDDVSLSIEKgEFVAIIGPNGSGKSTLLRLLNGLlKPTSGEV-----LVDGKDITKKNLRE 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgKRMAMILQDPKYSLnpvmtigrqIMETLR-------THEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVS 156
Cdd:COG1122 73 LR----RKVGLVFQNPDDQL---------FAPTVEedvafgpENLGLPREEIRERVEEALELVGLEHLA---DRPPHELS 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:COG1122 137 GGQKQRVAIAGVLAMEPEVLVLDEPTAGLDPRGRRELLELLKRL-NKEGKTVIIVTHDLDLVAELADRVIVLDDGRIV 213
|
|
| ABC_cobalt_CbiO_domain1 |
cd03225 |
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ... |
8-232 |
3.67e-42 |
|
First domain of the ATP-binding cassette component of cobalt transport system; Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213192 [Multi-domain] Cd Length: 211 Bit Score: 143.76 E-value: 3.67e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFPTRTglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKERR 85
Cdd:cd03225 2 LKNLSFSYPDGA--RPALDDISLTIKKgEFVLIVGPNGSGKSTLLRLLNGLlGPTSGEV-----LVDGKDLTKLSLKELR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 lmrgKRMAMILQDPKYSLnpVM-TIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVM 164
Cdd:cd03225 75 ----RKVGLVFQNPDDQF--FGpTVEEEVAFGLE-NLGLPEEEIEERVEEALELVGLEGLR---DRSPFTLSGGQKQRVA 144
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKL-KAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
|
| PhnC |
COG3638 |
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and ... |
4-245 |
6.58e-42 |
|
ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 442855 [Multi-domain] Cd Length: 249 Bit Score: 144.04 E-value: 6.58e-42
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAK 82
Cdd:COG3638 1 PMLELRNLSKRYPGGT---PALDDVSLEIERgEFVALIGPSGAGKSTLLRCLNGLVE----PTSGEILVDGQDVTALRGR 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLMRGkRMAMILQDpkYSLNP---VMT------IGRqiMETLRTHEKIGSSEARQRTLAMLEAVQIRD--PERVfdlf 151
Cdd:COG3638 74 ALRRLRR-RIGMIFQQ--FNLVPrlsVLTnvlagrLGR--TSTWRSLLGLFPPEDRERALEALERVGLADkaYQRA---- 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 152 pHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:COG3638 145 -DQLSGGQQQRVAIARALVQEPKLILADEPVASLDPKTARQVMDLLRRIAREDGITVVVNLHQVDLARRYADRIIGLRDG 223
|
250
....*....|....
gi 736475199 232 KVVEELASANLKEA 245
Cdd:COG3638 224 RVVFDGPPAELTDA 237
|
|
| ABC_MetN_methionine_transporter |
cd03258 |
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ... |
5-236 |
2.63e-41 |
|
ATP-binding cassette domain of methionine transporter; MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213225 [Multi-domain] Cd Length: 233 Bit Score: 142.33 E-value: 2.63e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLrfgdiDLLKASAK 82
Cdd:cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKgEIFGIIGRSGAGKSTLIRCINGLeRPTSGSVLVDGT-----DLTLLSGK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLMRgKRMAMILQdpKYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQR 162
Cdd:cd03258 76 ELRKAR-RRIGMIFQ--HFNLLSSRTVFENVALPLE-IAGVPKAEIEERVLELLELVGLEDKA---DAYPAQLSGGQKQR 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:cd03258 149 VGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEE 222
|
|
| CP_lyasePhnK |
TIGR02323 |
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P ... |
3-255 |
3.74e-41 |
|
phosphonate C-P lyase system protein PhnK; Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. [Central intermediary metabolism, Phosphorus compounds]
Pssm-ID: 188208 [Multi-domain] Cd Length: 253 Bit Score: 142.28 E-value: 3.74e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFPTRTGlveaVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMG-LTPKNARIEADTLRFGDIDLLKAS 80
Cdd:TIGR02323 1 KPLLQVSGLSKSYGGGKG----CRDVSFDLyPGEVLGIVGESGSGKSTLLGCLAGrLAPDHGTATYIMRSGAELELYQLS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 AKERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIrDPERVFDLfPHEVSGGMG 160
Cdd:TIGR02323 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEI-DPTRIDDL-PRAFSGGMQ 154
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 161 QRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE-LAS 239
Cdd:TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESgLTD 234
|
250
....*....|....*.
gi 736475199 240 ANLKEAKHPYTQGLLN 255
Cdd:TIGR02323 235 QVLDDPQHPYTQLLVS 250
|
|
| MlaF |
COG1127 |
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall ... |
1-251 |
1.83e-40 |
|
ATPase subunit MlaF of the ABC-type intermembrane phospholipid transporter Mla [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440744 [Multi-domain] Cd Length: 241 Bit Score: 140.11 E-value: 1.83e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLveavRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKA 79
Cdd:COG1127 1 MSEPMIEVRNLTKSFGDRVVL----DGVSLDVPRgEILAIIGGSGSGKSVLLKLIIGLL----RPDSGEILVDGQDITGL 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRLMRgKRMAMILQ-----DpkySlnpvMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDperVFDLFPHE 154
Cdd:COG1127 73 SEKELYELR-RRIGMLFQggalfD---S----LTVFENVAFPLREHTDLSEAEIRELVLEKLELVGLPG---AADKMPSE 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALD-VTVQlEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:COG1127 142 LSGGMRKRVALARALALDPEILLYDEPTAGLDpITSA-VIDELIRELRDELGLTSVVVTHDLDSAFAIADRVAVLADGKI 220
|
250
....*....|....*...
gi 736475199 234 VEELASANLKEAKHPYTQ 251
Cdd:COG1127 221 IAEGTPEELLASDDPWVR 238
|
|
| CcmA |
COG1131 |
ABC-type multidrug transport system, ATPase component [Defense mechanisms]; |
6-245 |
1.04e-39 |
|
ABC-type multidrug transport system, ATPase component [Defense mechanisms];
Pssm-ID: 440746 [Multi-domain] Cd Length: 236 Bit Score: 137.89 E-value: 1.04e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKER 84
Cdd:COG1131 1 IEVRGLTKRYGDKT----ALDGVSLTVEPgEIFGLLGPNGAGKTTTIRMLLGLL----RPTSGEVRVLGEDVARDPAEVR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgkRMAMILQDPkySLNPVMTiGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDP--ERVFDLfphevSGGMGQR 162
Cdd:COG1131 73 R-----RIGYVPQEP--ALYPDLT-VRENLRFFARLYGLPRKEARERIDELLELFGLTDAadRKVGTL-----SGGMKQR 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANL 242
Cdd:COG1131 140 LGLALALLHDPELLILDEPTSGLDPEARRELWELLREL-AAEGKTVLLSTHYLEEAERLCDRVAIIDKGRIVADGTPDEL 218
|
...
gi 736475199 243 KEA 245
Cdd:COG1131 219 KAR 221
|
|
| FepC |
COG1120 |
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion ... |
5-234 |
1.09e-39 |
|
ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism];
Pssm-ID: 440737 [Multi-domain] Cd Length: 254 Bit Score: 138.64 E-value: 1.09e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadtlRFGDIDLLKASAK 82
Cdd:COG1120 1 MLEAENLSVGYGGRP----VLDDVSLSLPPgEVTALLGPNGSGKSTLLRALAGlLKPSSGEV-----LLDGRDLASLSRR 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRlmrgKRMAMILQDPKYSLNpvMT------IGRQIMETLRTHEkigSSEARQRTLAMLEAVQIRD-PERVFDlfphEV 155
Cdd:COG1120 72 ELA----RRIAYVPQEPPAPFG--LTvrelvaLGRYPHLGLFGRP---SAEDREAVEEALERTGLEHlADRPVD----EL 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:COG1120 139 SGGERQRVLIARALAQEPPLLLLDEPTSHLDLAHQLEVLELLRRLARERGRTVVMVLHDLNLAARYADRLVLLKDGRIV 217
|
|
| GlnQ |
COG1126 |
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and ... |
5-236 |
1.22e-39 |
|
ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440743 [Multi-domain] Cd Length: 239 Bit Score: 137.82 E-value: 1.22e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLkASAKE 83
Cdd:COG1126 1 MIEIENLHKSF----GDLEVLKGISLDVEKgEVVVIIGPSGSGKSTLLRCINLLEE----PDSGTITVDGEDLT-DSKKD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRgKRMAMILQDpkYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRV 163
Cdd:COG1126 72 INKLR-RKVGMVFQQ--FNLFPHLTVLENVTLAPIKVKKMSKAEAEERAMELLERVGLADKA---DAYPAQLSGGQQQRV 145
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 164 MIAMMLVCGPELLIADEPTSALD-VTVQlEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:COG1126 146 AIARALAMEPKVMLFDEPTSALDpELVG-EVLDVMRDLAKE-GMTMVVVTHEMGFAREVADRVVFMDGGRIVEE 217
|
|
| ABC_Org_Solvent_Resistant |
cd03261 |
ATP-binding cassette transport system involved in resistance to organic solvents; ABC ... |
8-249 |
7.97e-39 |
|
ATP-binding cassette transport system involved in resistance to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213228 [Multi-domain] Cd Length: 235 Bit Score: 135.71 E-value: 7.97e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFPTRTGLveavRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTlrfgdIDLLKASAKERR 85
Cdd:cd03261 3 LRGLTKSFGGRTVL----KGVDLDVRRgEILAIIGPSGSGKSTLLRLIVGLlRPDSGEVLIDG-----EDISGLSEAELY 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 LMRgKRMAMILQDPkySLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMI 165
Cdd:cd03261 74 RLR-RRMGMLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAE---DLYPAELSGGMKKRVAL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 166 AMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANLKEA 245
Cdd:cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227
|
....
gi 736475199 246 KHPY 249
Cdd:cd03261 228 DDPL 231
|
|
| ABC_Iron-Siderophores_B12_Hemin |
cd03214 |
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related ... |
7-234 |
2.20e-37 |
|
ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins; ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Pssm-ID: 213181 [Multi-domain] Cd Length: 180 Bit Score: 130.25 E-value: 2.20e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 7 TVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKERR 85
Cdd:cd03214 1 EVENLSVGYGGRT----VLDDLSLSIEAgEIVGILGPNGAGKSTLLKTLAGLLK----PSSGEILLDGKDLASLSPKELA 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 lmrgKRMAMILQdpkyslnpvmtigrqimetlrthekigssearqrtlaMLEAVQIRD-PERVFDlfphEVSGGMGQRVM 164
Cdd:cd03214 73 ----RKIAYVPQ-------------------------------------ALELLGLAHlADRPFN----ELSGGERQRVL 107
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03214 108 LARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIV 177
|
|
| PRK15112 |
PRK15112 |
peptide ABC transporter ATP-binding protein SapF; |
4-255 |
3.28e-37 |
|
peptide ABC transporter ATP-binding protein SapF;
Pssm-ID: 185067 [Multi-domain] Cd Length: 267 Bit Score: 132.61 E-value: 3.28e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTGL-----VEAVRGVSFTLG-RERLGIVGESGSGKSQTGRAIMGLTPKNA---RIEADTLRFGDI 74
Cdd:PRK15112 3 TLLEVRNLSKTFRYRTGWfrrqtVEAVKPLSFTLReGQTLAIIGENGSGKSTLAKMLAGMIEPTSgelLIDDHPLHFGDY 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 75 DLlkasakerrlmRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRdPERVFdLFPHE 154
Cdd:PRK15112 83 SY-----------RSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLL-PDHAS-YYPHM 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK15112 150 LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV 229
|
250 260
....*....|....*....|..
gi 736475199 235 EELASAN-LKEAKHPYTQGLLN 255
Cdd:PRK15112 230 ERGSTADvLASPLHELTKRLIA 251
|
|
| ABC_PhnC_transporter |
cd03256 |
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; ... |
6-246 |
8.10e-37 |
|
ATP-binding cassette domain of the binding protein-dependent phosphonate transport system; Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213223 [Multi-domain] Cd Length: 241 Bit Score: 130.77 E-value: 8.10e-37
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPtrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKER 84
Cdd:cd03256 1 IEVENLSKTYP---NGKKALKDVSLSINPgEFVALIGPSGAGKSTLLRCLNGLV----EPTSGSVLIDGTDINKLKGKAL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRgKRMAMILQDpkYSLNPVMTIGRQI-------METLRTHEKIGSSEARQRTLAMLEAVQIRDPE--RVfdlfpHEV 155
Cdd:cd03256 74 RQLR-RQIGMIFQQ--FNLIERLSVLENVlsgrlgrRSTWRSLFGLFPKEEKQRALAALERVGLLDKAyqRA-----DQL 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03256 146 SGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF 225
|
250
....*....|.
gi 736475199 236 ELASANLKEAK 246
Cdd:cd03256 226 DGPPAELTDEV 236
|
|
| TauB |
COG1116 |
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion ... |
1-237 |
2.90e-36 |
|
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440733 [Multi-domain] Cd Length: 260 Bit Score: 129.82 E-value: 2.90e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSAS--LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEADTlrfGDIDLL 77
Cdd:COG1116 1 MSAAapALELRGVSKRFPTGGGGVTALDDVSLTVAAgEFVALVGPSGCGKSTLLRLIAGL------EKPTS---GEVLVD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 78 KASAKERrlmrGKRMAMILQDPkySLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSG 157
Cdd:COG1116 72 GKPVTGP----GPDRGVVFQEP--ALLPWLTVLDNVALGLE-LRGVPKAERRERARELLELVGLAGFE---DAYPHQLSG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 158 GMGQRVMIAMMLVCGPELLIADEPTSALDV----TVQLEVLDILdklvRDRGMGLIFVSHD----LRLvssfCDRVLVMY 229
Cdd:COG1116 142 GMRQRVAIARALANDPEVLLMDEPFGALDAltreRLQDELLRLW----QETGKTVLFVTHDvdeaVFL----ADRVVVLS 213
|
250
....*....|
gi 736475199 230 A--GKVVEEL 237
Cdd:COG1116 214 ArpGRIVEEI 223
|
|
| ABC_NrtD_SsuB_transporters |
cd03293 |
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ... |
6-237 |
2.11e-35 |
|
ATP-binding cassette domain of the nitrate and sulfonate transporters; NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213260 [Multi-domain] Cd Length: 220 Bit Score: 126.43 E-value: 2.11e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEADTlrfGDIDLLKASAKER 84
Cdd:cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEgEFVALVGPSGCGKSTLLRIIAGL------ERPTS---GEVLVDGEPVTGP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 rlmrGKRMAMILQDpkYSLNPVMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVM 164
Cdd:cd03293 72 ----GPDRGYVFQQ--DALLPWLTVLDNVALGLELQ-GVPKAEARERAEELLELVGLSGFE---NAYPHQLSGGMRQRVA 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 165 IAMMLVCGPELLIADEPTSALDV----TVQLEVLDILdklvRDRGMGLIFVSHDLRLVSSFCDRVLVMYA--GKVVEEL 237
Cdd:cd03293 142 LARALAVDPDVLLLDEPFSALDAltreQLQEELLDIW----RETGKTVLLVTHDIDEAVFLADRVVVLSArpGRIVAEV 216
|
|
| ZnuC |
COG1121 |
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
1-245 |
2.67e-35 |
|
ABC-type Mn2+/Zn2+ transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440738 [Multi-domain] Cd Length: 245 Bit Score: 126.74 E-value: 2.67e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKA 79
Cdd:COG1121 2 MMMPAIELENLTVSYGGRP----VLEDVSLTIPPgEFVAIVGPNGAGKSTLLKAILGLLPPTS---------GTVRLFGK 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRlmrgKRMAMILQdpKYSLNPVMTI-GRQIMETLRTHE----KIGSSEARQRTLAMLEAVQIRDpervfdlFPH- 153
Cdd:COG1121 69 PPRRAR----RRIGYVPQ--RAEVDWDFPItVRDVVLMGRYGRrglfRRPSRADREAVDEALERVGLED-------LADr 135
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 ---EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVM-- 228
Cdd:COG1121 136 pigELSGGQQQRVLLARALAQDPDLLLLDEPFAGVDAATEEALYELLREL-RREGKTILVVTHDLGAVREYFDRVLLLnr 214
|
250 260
....*....|....*....|
gi 736475199 229 ---YAGKVVEELASANLKEA 245
Cdd:COG1121 215 glvAHGPPEEVLTPENLSRA 234
|
|
| ABC_Carb_Solutes_like |
cd03259 |
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is ... |
6-235 |
3.11e-35 |
|
ATP-binding cassette domain of the carbohydrate and solute transporters-like; This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213226 [Multi-domain] Cd Length: 213 Bit Score: 125.71 E-value: 3.11e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKER 84
Cdd:cd03259 1 LELKGLSKTY----GSVRALDDLSLTVEPgEFLALLGPSGCGKTTLLRLIAGLE----RPDSGEILIDGRDVTGVPPERR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLmrgkrmAMILQDpkYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVM 164
Cdd:cd03259 73 NI------GMVFQD--YALFPHLTVAENIAFGLK-LRGVPKAEIRARVRELLELVGLEGLL---NRYPHELSGGQQQRVA 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03259 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211
|
|
| AbcC |
COG1135 |
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; |
6-272 |
6.73e-35 |
|
ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 440750 [Multi-domain] Cd Length: 339 Bit Score: 128.27 E-value: 6.73e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:COG1135 2 IELENLSKTFPTKGGPVTALDDVSLTIEKgEIFGIIGYSGAGKSTLIRCINLLeRPTSGSV-----LVDGVDLTALSERE 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRgKRMAMILQDpkYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDPERVFdlfPHEVSGGMGQRV 163
Cdd:COG1135 77 LRAAR-RKIGMIFQH--FNLLSSRTVAENVALPLE-IAGVPKAEIRKRVAELLELVGLSDKADAY---PSQLSGGQKQRV 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANL- 242
Cdd:COG1135 150 GIARALANNPKVLLCDEATSALDPETTRSILDLLKDINRELGLTIVLITHEMDVVRRICDRVAVLENGRIVEQGPVLDVf 229
|
250 260 270
....*....|....*....|....*....|
gi 736475199 243 KEAKHPYTQGLlncLPQIGGHRHPLPVLER 272
Cdd:COG1135 230 ANPQSELTRRF---LPTVLNDELPEELLAR 256
|
|
| ABC_DR_subfamily_A |
cd03230 |
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily ... |
6-233 |
7.77e-35 |
|
ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A; This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213197 [Multi-domain] Cd Length: 173 Bit Score: 123.66 E-value: 7.77e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEADTlrfGDIDLLKASAKER 84
Cdd:cd03230 1 IEVRNLSKRYGKKT----ALDDISLTVEKgEIYGLLGPNGAGKTTLIKIILGL------LKPDS---GEIKVLGKDIKKE 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRGKRMAMILQDPkySLNPVMTIgrqiMETLRthekigssearqrtlamleavqirdpervfdlfpheVSGGMGQRVM 164
Cdd:cd03230 68 PEEVKRRIGYLPEEP--SLYENLTV----RENLK------------------------------------LSGGMKQRLA 105
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:cd03230 106 LAQALLHDPELLILDEPTSGLDPESRREFWELLREL-KKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
|
| ABC_HisP_GlnQ |
cd03262 |
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ... |
6-233 |
1.53e-33 |
|
ATP-binding cassette domain of the histidine and glutamine transporters; HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein.
Pssm-ID: 213229 [Multi-domain] Cd Length: 213 Bit Score: 121.48 E-value: 1.53e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKER 84
Cdd:cd03262 1 IEIKNLHKSF----GDFHVLKGIDLTVKKgEVVVIIGPSGSGKSTLLRCINLLE----EPDSGTIIIDGLKLTDDKKNIN 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMrgKRMAMILQDpkYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVM 164
Cdd:cd03262 73 ELR--QKVGMVFQQ--FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKA---DAYPAQLSGGQQQRVA 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEE-GMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
|
| YbbA |
COG4181 |
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase ... |
1-240 |
3.28e-33 |
|
Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism];
Pssm-ID: 443338 [Multi-domain] Cd Length: 233 Bit Score: 121.00 E-value: 3.28e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSqTGRAIM-GL-TPKNARIEADtlrfgDIDLL 77
Cdd:COG4181 4 SSAPIIELRGLTKTVGTGAGELTILKGISLEVEAgESVAIVGASGSGKS-TLLGLLaGLdRPTSGTVRLA-----GQDLF 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 78 KASAKERRLMRGKRMAMILQDpkYSLNPVMTIGRQIMETLrthEKIGSSEARQRTLAMLEAVQIRdpERVfDLFPHEVSG 157
Cdd:COG4181 78 ALDEDARARLRARHVGFVFQS--FQLLPTLTALENVMLPL---ELAGRRDARARARALLERVGLG--HRL-DHYPAQLSG 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 158 GMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEEL 237
Cdd:COG4181 150 GEQQRVALARAFATEPAILFADEPTGNLDAATGEQIIDLLFELNRERGTTLVLVTHDPALAAR-CDRVLRLRAGRLVEDT 228
|
...
gi 736475199 238 ASA 240
Cdd:COG4181 229 AAT 231
|
|
| PotA |
COG3842 |
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport ... |
1-234 |
8.96e-33 |
|
ABC-type Fe3+/spermidine/putrescine transport systems, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443052 [Multi-domain] Cd Length: 353 Bit Score: 122.90 E-value: 8.96e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLK 78
Cdd:COG3842 1 MAMPALELENVSKRY----GDVTALDDVSLSIEPgEFVALLGPSGCGKTTLLRMIAGFeTPDSGRI-----LLDGRDVTG 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERRlmrgkrMAMILQDpkYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGG 158
Cdd:COG3842 72 LPPEKRN------VGMVFQD--YALFPHLTVAENVAFGLR-MRGVPKAEIRARVAELLELVGLEGLA---DRYPHQLSGG 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:COG3842 140 QQQRVALARALAPEPRVLLLDEPLSALDAKLREEMREELRRLQRELGITFIYVTHDQEEALALADRIAVMNDGRIE 215
|
|
| ABC_Metallic_Cations |
cd03235 |
ATP-binding cassette domain of the metal-type transporters; This family includes transporters ... |
8-228 |
1.54e-32 |
|
ATP-binding cassette domain of the metal-type transporters; This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Pssm-ID: 213202 [Multi-domain] Cd Length: 213 Bit Score: 118.79 E-value: 1.54e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFPTRtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKnarieadtlRFGDIDLLKASAKERRl 86
Cdd:cd03235 2 VEDLTVSYGGH----PVLEDVSFEVKPgEFLAIVGPNGAGKSTLLKAILGLLKP---------TSGSIRVFGKPLEKER- 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 87 mrgKRMAMILQdpKYSLNPVMTI-GRQIMETLRTHEKIG----SSEARQRTLAMLEAVQIRD-PERVFDlfphEVSGGMG 160
Cdd:cd03235 68 ---KRIGYVPQ--RRSIDRDFPIsVRDVVLMGLYGHKGLfrrlSKADKAKVDEALERVGLSElADRQIG----ELSGGQQ 138
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 161 QRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVM 228
Cdd:cd03235 139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLREL-RREGMTILVVTHDLGLVLEYFDRVLLL 205
|
|
| ABC_phnC |
TIGR02315 |
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of ... |
5-246 |
1.08e-31 |
|
phosphonate ABC transporter, ATP-binding protein; Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. [Transport and binding proteins, Anions]
Pssm-ID: 131368 [Multi-domain] Cd Length: 243 Bit Score: 117.40 E-value: 1.08e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgDIDLLKASAK 82
Cdd:TIGR02315 1 MLEVENLSKVYPNGK---QALKNINLNINPgEFVAIIGPSGAGKSTLLRCINRLvEPSSGSILLE-----GTDITKLRGK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLMRgKRMAMILQDpkYSLNPVMT------IGR-QIMETLRTHEKIGSSEARQRTLAMLEAVQIRDP--ERVFDLfph 153
Cdd:TIGR02315 73 KLRKLR-RRIGMIFQH--YNLIERLTvlenvlHGRlGYKPTWRSLLGRFSEEDKERALSALERVGLADKayQRADQL--- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 evSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:TIGR02315 147 --SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEI 224
|
250
....*....|...
gi 736475199 234 VEELASANLKEAK 246
Cdd:TIGR02315 225 VFDGAPSELDDEV 237
|
|
| CysA |
COG1118 |
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and ... |
1-235 |
2.99e-31 |
|
ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440735 [Multi-domain] Cd Length: 348 Bit Score: 118.71 E-value: 2.99e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSaslLTVENLRVSFPTRTglveAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLL- 77
Cdd:COG1118 1 MS---IEVRNISKRFGSFT----LLDDVSLEIaSGELVALLGPSGSGKTTLLRIIAGLeTPDSGRI-----VLNGRDLFt 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 78 KASAKERRlmrgkrMAMILQDpkYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSG 157
Cdd:COG1118 69 NLPPRERR------VGFVFQH--YALFPHMTVAENIAFGLR-VRPPSKAEIRARVEELLELVQLEGLA---DRYPSQLSG 136
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 158 GMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:COG1118 137 GQRQRVALARALAVEPEVLLLDEPFGALDAKVRKELRRWLRRLHDELGGTTVFVTHDQEEALELADRVVVMNQGRIEQ 214
|
|
| ABC_Pro_Gly_Betaine |
cd03294 |
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This ... |
17-235 |
4.86e-31 |
|
ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system; This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213261 [Multi-domain] Cd Length: 269 Bit Score: 116.20 E-value: 4.86e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 17 TRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLT-PKNARIEADTLrfgdiDLLKASAKERRLMRGKRMAM 94
Cdd:cd03294 32 KKTGQTVGVNDVSLDVREgEIFVIMGLSGSGKSTLLRCINRLIePTSGKVLIDGQ-----DIAAMSRKELRELRRKKISM 106
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 95 ILQdpKYSLNPVMTIGRQIMETLRThEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMIAMMLVCGPE 174
Cdd:cd03294 107 VFQ--SFALLPHRTVLENVAFGLEV-QGVPRAEREERAAEALELVGLEGWE---HKYPDELSGGMQQRVGLARALAVDPD 180
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 175 LLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ 241
|
|
| ECF_ATPase_2 |
TIGR04521 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
24-234 |
5.96e-31 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the downstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275314 [Multi-domain] Cd Length: 277 Bit Score: 116.40 E-value: 5.96e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPknariEADTLRFGDIDLLKASAKERRLMRgKRMAMILQDPKY 101
Cdd:TIGR04521 20 ALDDVSLTIEDgEFVAIIGHTGSGKSTLIQHLNGLlKP-----TSGTVTIDGRDITAKKKKKLKDLR-KKVGLVFQFPEH 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 102 slnpvmtigrQIMETlrTHEK----------IGSSEARQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQRVMIAMMLVC 171
Cdd:TIGR04521 94 ----------QLFEE--TVYKdiafgpknlgLSEEEAEERVKEALELVGL--DEEYLERSPFELSGGQMRRVAIAGVLAM 159
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 172 GPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:TIGR04521 160 EPEVLILDEPTAGLDPKGRKEILDLFKRLHKEKGLTVILVTHSMEDVAEYADRVIVMHKGKIV 222
|
|
| NatA |
COG4555 |
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, ... |
5-245 |
7.00e-31 |
|
ABC-type Na+ transport system, ATPase component NatA [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 443618 [Multi-domain] Cd Length: 243 Bit Score: 115.34 E-value: 7.00e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKASAKE 83
Cdd:COG4555 1 MIEVENLSKKY----GKVPALKDVSFTAKDgEITGLLGPNGAGKTTLLRMLAGLLKPDS---------GSILIDGEDVRK 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRGKRMAMILQDPkySLNPVMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIRDP--ERVFDLfphevSGGMGQ 161
Cdd:COG4555 68 EPREARRQIGVLPDER--GLYDRLTVRENIRYFAELY-GLFDEELKKRIEELIELLGLEEFldRRVGEL-----STGMKK 139
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILdKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV------- 234
Cdd:COG4555 140 KVALARALVHDPKVLLLDEPTNGLDVMARRLLREIL-RALKKEGKTVLFSSHIMQEVEALCDRVVILHKGKVVaqgslde 218
|
250
....*....|...
gi 736475199 235 --EELASANLKEA 245
Cdd:COG4555 219 lrEEIGEENLEDA 231
|
|
| ABC_tran |
pfam00005 |
ABC transporter; ABC transporters for a large family of proteins responsible for translocation ... |
25-183 |
1.22e-30 |
|
ABC transporter; ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide or belong in different polypeptide chains.
Pssm-ID: 394964 [Multi-domain] Cd Length: 150 Bit Score: 111.97 E-value: 1.22e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 25 VRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKnariEADTLRFGDIDLLKASAKERRlmrgKRMAMILQDPkySL 103
Cdd:pfam00005 1 LKNVSLTLNPgEILALVGPNGAGKSTLLKLIAGLLSP----TEGTILLDGQDLTDDERKSLR----KEIGYVFQDP--QL 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 104 NPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRD-PERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPT 182
Cdd:pfam00005 71 FPRLTVRENLRLGLL-LKGLSKREKDARAEEALEKLGLGDlADRPVGERPGTLSGGQRQRVAIARALLTKPKLLLLDEPT 149
|
.
gi 736475199 183 S 183
Cdd:pfam00005 150 A 150
|
|
| FetA |
COG4619 |
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism]; |
6-233 |
2.43e-30 |
|
ABC-type iron transporter FetAB, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443661 [Multi-domain] Cd Length: 209 Bit Score: 112.99 E-value: 2.43e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLveavRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieaDTLRFGDIDLLKASAKER 84
Cdd:COG4619 1 LELEGLSFRVGGKPIL----SPVSLTLEAgECVAITGPSGSGKSTLLRALADLDPPTS----GEIYLDGKPLSAMPPPEW 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgKRMAMILQDPkyslnpVM---TIGRQIMETLRTHEKIGSseaRQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQ 161
Cdd:COG4619 73 R----RQVAYVPQEP------ALwggTVRDNLPFPFQLRERKFD---RERALELLERLGL--PPDILDKPVERLSGGERQ 137
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:COG4619 138 RLALIRALLLQPDVLLLDEPTSALDPENTRRVEELLREYLAEEGRAVLWVSHDPEQIERVADRVLTLEAGRL 209
|
|
| ABC_Class3 |
cd03229 |
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is ... |
6-232 |
1.67e-29 |
|
ATP-binding cassette domain of the binding protein-dependent transport systems; This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213196 [Multi-domain] Cd Length: 178 Bit Score: 109.97 E-value: 1.67e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKER 84
Cdd:cd03229 1 LELKNVSKRY----GQKTVLNDVSLNIEAgEIVALLGPSGSGKSTLLRCIAGLE----EPDSGSILIDGEDLTDLEDELP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRgkRMAMILQDpkYSLNPVMTIGRQIMETLrthekigssearqrtlamleavqirdpervfdlfphevSGGMGQRVM 164
Cdd:cd03229 73 PLRR--RIGMVFQD--FALFPHLTVLENIALGL--------------------------------------SGGQQQRVA 110
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
|
| FtsE |
COG2884 |
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning]; |
22-235 |
1.71e-29 |
|
Cell division ATPase FtsE [Cell cycle control, cell division, chromosome partitioning];
Pssm-ID: 442130 [Multi-domain] Cd Length: 223 Bit Score: 110.91 E-value: 1.71e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 22 VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKERRLMRgKRMAMILQDpk 100
Cdd:COG2884 15 REALSDVSLEIEKgEFVFLTGPSGAGKSTLLKLLYGEE----RPTSGQVLVNGQDLSRLKRREIPYLR-RRIGVVFQD-- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 101 YSLNPVMTIGRQIMETLRTHEKiGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMIAMMLVCGPELLIADE 180
Cdd:COG2884 88 FRLLPDRTVYENVALPLRVTGK-SRKEIRRRVREVLDLVGLSDKA---KALPHELSGGEQQRVAIARALVNRPELLLADE 163
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 181 PTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:COG2884 164 PTGNLDPETSWEIMELLEEINR-RGTTVLIATHDLELVDRMPKRVLELEDGRLVR 217
|
|
| ABC_ATPase |
cd00267 |
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large ... |
7-232 |
2.21e-29 |
|
ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213179 [Multi-domain] Cd Length: 157 Bit Score: 108.87 E-value: 2.21e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 7 TVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKERR 85
Cdd:cd00267 1 EIENLSFRYGGRT----ALDNVSLTLKAgEIVALVGPNGSGKSTLLRAIAGLL----KPTSGEILIDGKDIAKLPLEELR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 lmrgKRMAMILQdpkyslnpvmtigrqimetlrthekigssearqrtlamleavqirdpervfdlfpheVSGGMGQRVMI 165
Cdd:cd00267 73 ----RRIGYVPQ---------------------------------------------------------LSGGQRQRVAL 91
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 166 AMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:cd00267 92 ARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
|
| ABC_ModC_molybdenum_transporter |
cd03297 |
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type ... |
28-234 |
3.33e-29 |
|
ATP-binding cassette domain of the molybdenum transport system; ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213264 [Multi-domain] Cd Length: 214 Bit Score: 110.08 E-value: 3.33e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 28 VSFTLGRERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKERRLMRGKRMAMILQDpkYSLNPVM 107
Cdd:cd03297 17 IDFDLNEEVTGIFGASGAGKSTLLRCIAGLE----KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQ--YALFPHL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 108 TIGRQIMETLRTHEkigSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDV 187
Cdd:cd03297 91 NVRENLAFGLKRKR---NREDRISVDELLDLLGL---DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDR 164
|
170 180 190 200
....*....|....*....|....*....|....*....|....*..
gi 736475199 188 TVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03297 165 ALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
|
| ABC_PotA_N |
cd03300 |
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and ... |
6-235 |
6.26e-28 |
|
ATP-binding cassette domain of the polyamine transporter; PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213267 [Multi-domain] Cd Length: 232 Bit Score: 107.32 E-value: 6.26e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:cd03300 1 IELENVSKFY----GGFVALDGVSLDIKEgEFFTLLGPSGCGKTTLLRLIAGFeTPTSGEI-----LLDGKDITNLPPHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgkrMAMILQdpKYSLNPVMTIGRQIMETLRThEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRV 163
Cdd:cd03300 72 RP------VNTVFQ--NYALFPHLTVFENIAFGLRL-KKLPKAEIKERVAEALDLVQLEGYA---NRKPSQLSGGQQQRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQ 211
|
|
| ABC_cobalt_CbiO_domain2 |
cd03226 |
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of ... |
7-234 |
1.14e-27 |
|
Second domain of the ATP-binding cassette component of cobalt transport system; Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Pssm-ID: 213193 [Multi-domain] Cd Length: 205 Bit Score: 105.80 E-value: 1.14e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 7 TVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLT-PKNARIEadtlrfgdIDLLKASAKER 84
Cdd:cd03226 1 RIENISFSYKKGT---EILDDLSLDLYAgEIIALTGKNGAGKTTLAKILAGLIkESSGSIL--------LNGKPIKAKER 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgKRMAMILQDPKYSLNPVmTIGRQIMETLR-THEKIGSSEARQRTLAMLEAVqirdpervfDLFPHEVSGGMGQRV 163
Cdd:cd03226 70 R----KSIGYVMQDVDYQLFTD-SVREELLLGLKeLDAGNEQAETVLKDLDLYALK---------ERHPLSLSGGQKQRL 135
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDvtvqLEVLDILDKLVRD---RGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03226 136 AIAAALLSGKDLLIFDEPTSGLD----YKNMERVGELIRElaaQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
|
| ABC_MalK_N |
cd03301 |
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) ... |
6-235 |
1.50e-27 |
|
The N-terminal ATPase domain of the maltose transporter, MalK; ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Pssm-ID: 213268 [Multi-domain] Cd Length: 213 Bit Score: 105.80 E-value: 1.50e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTLG-RERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKER 84
Cdd:cd03301 1 VELENVTKRFGNVT----ALDDLNLDIAdGEFVVLLGPSGCGKTTTLRMIAGLEE----PTSGRIYIGGRDVTDLPPKDR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLmrgkrmAMILQDpkYSLNPVMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVM 164
Cdd:cd03301 73 DI------AMVFQN--YALYPHMTVYDNIAFGLKLR-KVPKDEIDERVREVAELLQI---EHLLDRKPKQLSGGQRQRVA 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03301 141 LGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQ 211
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
5-246 |
1.70e-27 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 110.49 E-value: 1.70e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSfptrtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA---RIEADTLRFGDIdllkas 80
Cdd:COG1129 256 VLEVEGLSVG--------GVVRDVSFSVRAgEILGIAGLVGAGRTELARALFGADPADSgeiRLDGKPVRIRSP------ 321
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 akeRRLMRgKRMAMILQDPK-YSLNPVMTIGRQImeTLRTHEKIGS----SEARQRTLA--MLEAVQIR--DPER-VFDL 150
Cdd:COG1129 322 ---RDAIR-AGIAYVPEDRKgEGLVLDLSIRENI--TLASLDRLSRggllDRRRERALAeeYIKRLRIKtpSPEQpVGNL 395
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 fphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVrDRGMGLIFVSHDLRLVSSFCDRVLVMYA 230
Cdd:COG1129 396 -----SGGNQQKVVLAKWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELA-AEGKAVIVISSELPELLGLSDRILVMRE 469
|
250
....*....|....*.
gi 736475199 231 GKVVEELASANLKEAK 246
Cdd:COG1129 470 GRIVGELDREEATEEA 485
|
|
| YhaQ |
COG4152 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-246 |
2.20e-27 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443322 [Multi-domain] Cd Length: 298 Bit Score: 107.12 E-value: 2.20e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGLtpknarIEADTlrfGDIDLL--KASAK 82
Cdd:COG4152 2 LELKGLTKRFGDKT----AVDDVSFTVPKGEIfGLLGPNGAGKTTTIRIILGI------LAPDS---GEVLWDgePLDPE 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLM------RGkrmamilqdpkysLNPVMTIGRQI--METLRTHEKigsSEARQRTLAMLEAVQIRD--PERVFDLfp 152
Cdd:COG4152 69 DRRRIgylpeeRG-------------LYPKMKVGEQLvyLARLKGLSK---AEAKRRADEWLERLGLGDraNKKVEEL-- 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 153 hevSGGMGQRVMIAMMLVCGPELLIADEPTSALD-VTVQLeVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:COG4152 131 ---SKGNQQKVQLIAALLHDPELLILDEPFSGLDpVNVEL-LKDVIREL-AAKGTTVIFSSHQMELVEELCDRIVIINKG 205
|
250
....*....|....*
gi 736475199 232 KVVeelASANLKEAK 246
Cdd:COG4152 206 RKV---LSGSVDEIR 217
|
|
| ABC_TM1139_LivF_branched |
cd03224 |
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of ... |
6-244 |
3.44e-27 |
|
ATP-binding cassette domain of branched-chain amino acid transporter; LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Pssm-ID: 213191 [Multi-domain] Cd Length: 222 Bit Score: 104.82 E-value: 3.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTP-KNARIeadtlRFGDIDLLKASAkE 83
Cdd:cd03224 1 LEVENLNAGY----GKSQILFGVSLTVPEgEIVALLGRNGAGKTTLLKTIMGLLPpRSGSI-----RFDGRDITGLPP-H 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRGkrMAMILQDPKysLNPVMTIgrqiMETLRTHEKIGSSEARQRTLamleavqirdpERVFDLFP----------H 153
Cdd:cd03224 71 ERARAG--IGYVPEGRR--IFPELTV----EENLLLGAYARRRAKRKARL-----------ERVYELFPrlkerrkqlaG 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:cd03224 132 TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIREL-RDEGVTILLVEQNARFALEIADRAYVLERGRV 210
|
250
....*....|.
gi 736475199 234 VEELASANLKE 244
Cdd:cd03224 211 VLEGTAAELLA 221
|
|
| ABC_DrrA |
cd03265 |
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein ... |
8-243 |
4.44e-27 |
|
Daunorubicin/doxorubicin resistance ATP-binding protein; DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213232 [Multi-domain] Cd Length: 220 Bit Score: 104.76 E-value: 4.44e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKERRl 86
Cdd:cd03265 3 VENLVKKY----GDFEAVRGVSFRVRRgEIFGLLGPNGAGKTTTIKMLTTLL----KPTSGRATVAGHDVVREPREVRR- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 87 mrgkRMAMILQDPkySLNPVMTiGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDperVFDLFPHEVSGGMGQRVMIA 166
Cdd:cd03265 74 ----RIGIVFQDL--SVDDELT-GWENLYIHARLYGVPGAERRERIDELLDFVGLLE---AADRLVKTYSGGMRRRLEIA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 167 MMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANLK 243
Cdd:cd03265 144 RSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEELK 220
|
|
| ABC_putative_ATPase |
cd03269 |
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the ... |
6-234 |
9.68e-27 |
|
ATP-binding cassette domain of an uncharacterized transporter; This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213236 [Multi-domain] Cd Length: 210 Bit Score: 103.51 E-value: 9.68e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA---RIEADTLRFGDIDLLKASA 81
Cdd:cd03269 1 LEVENVTKRF----GRVTALDDISFSVEKgEIFGLLGPNGAGKTTTIRMILGIILPDSgevLFDGKPLDIAARNRIGYLP 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERrlmrgkrmamilqdpkySLNPVMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIRDPE--RVfdlfpHEVSGGM 159
Cdd:cd03269 77 EER-----------------GLYPKMKVIDQLVYLAQLK-GLKKEEARRRIDEWLERLELSEYAnkRV-----EELSKGN 133
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03269 134 QQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIREL-ARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
|
| SunT |
COG2274 |
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase ... |
6-251 |
2.20e-26 |
|
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms];
Pssm-ID: 441875 [Multi-domain] Cd Length: 711 Bit Score: 108.00 E-value: 2.20e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENlrVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:COG2274 474 IELEN--VSFRYPGDSPPVLDNISLTIKPgERVAIVGRSGSGKSTLLKLLLGLyEPTSGRI-----LIDGIDLRQIDPAS 546
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgKRMAMILQDPkyslnpvmtigrQIME-TLR-----THEKIGSSEARQ--RTLAMLEAVQiRDPERvFDLFPHE- 154
Cdd:COG2274 547 LR----RQIGVVLQDV------------FLFSgTIRenitlGDPDATDEEIIEaaRLAGLHDFIE-ALPMG-YDTVVGEg 608
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 ---VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSfCDRVLVMYAG 231
Cdd:COG2274 609 gsnLSGGQRQRLAIARALLRNPRILILDEATSALDAETEAIILENLRRLLKGR--TVIIIAHRLSTIRL-ADRIIVLDKG 685
|
250 260
....*....|....*....|
gi 736475199 232 KVVEELASANLKEAKHPYTQ 251
Cdd:COG2274 686 RIVEDGTHEELLARKGLYAE 705
|
|
| metN |
PRK11153 |
DL-methionine transporter ATP-binding subunit; Provisional |
7-251 |
4.47e-26 |
|
DL-methionine transporter ATP-binding subunit; Provisional
Pssm-ID: 236863 [Multi-domain] Cd Length: 343 Bit Score: 104.50 E-value: 4.47e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 7 TVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLT-PKNARIEADtlrfgDIDLLKASAKER 84
Cdd:PRK11153 3 ELKNISKVFPQGGRTIHALNNVSLHIPAgEIFGVIGASGAGKSTLIRCINLLErPTSGRVLVD-----GQDLTALSEKEL 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRgKRMAMILQdpKYSLNPVMTIGRQIMETLRThEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVM 164
Cdd:PRK11153 78 RKAR-RQIGMIFQ--HFNLLSSRTVFDNVALPLEL-AGTPKAEIKARVTELLELVGLSDKA---DRYPAQLSGGQKQRVA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANL-K 243
Cdd:PRK11153 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVfS 230
|
....*...
gi 736475199 244 EAKHPYTQ 251
Cdd:PRK11153 231 HPKHPLTR 238
|
|
| ABC_Carb_Monos_II |
cd03215 |
Second domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
5-233 |
1.13e-25 |
|
Second domain of the ATP-binding cassette component of monosaccharide transport system; This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213182 [Multi-domain] Cd Length: 182 Bit Score: 99.81 E-value: 1.13e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSfptrtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKE 83
Cdd:cd03215 4 VLEVRGLSVK--------GAVRDVSFEVRAgEIVGIAGLVGNGQTELAEALFGLRP----PASGEITLDGKPVTRRSPRD 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrGKRMAMILQDPK-YSLNPVMTIGRQImetlrthekigssearqrtlamleavqirdpervfdLFPHEVSGGMGQR 162
Cdd:cd03215 72 AI---RAGIAYVPEDRKrEGLVLDLSVAENI------------------------------------ALSSLLSGGNQQK 112
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:cd03215 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIREL-ADAGKAVLLISSELDELLGLCDRILVMYEGRI 182
|
|
| ABC_Mj1267_LivG_branched |
cd03219 |
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ... |
6-236 |
1.44e-25 |
|
ATP-binding cassette component of branched chain amino acids transport system; The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Pssm-ID: 213186 [Multi-domain] Cd Length: 236 Bit Score: 100.97 E-value: 1.44e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:cd03219 1 LEVRGLTKRF----GGLVALDDVSFSVRPgEIHGLIGPNGAGKTTLFNLISGfLRPTSGSV-----LFDGEDITGLPPHE 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlMRGkrMAMILQDPkySLNPVMT------IGRQIMETLRTHEKIGS---SEARQRTLAMLEAVQIRDperVFDLFPHE 154
Cdd:cd03219 72 IA-RLG--IGRTFQIP--RLFPELTvlenvmVAAQARTGSGLLLARARreeREARERAEELLERVGLAD---LADRPAGE 143
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03219 144 LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVLLVEHDMDVVMSLADRVTVLDQGRVI 222
|
..
gi 736475199 235 EE 236
Cdd:cd03219 223 AE 224
|
|
| cbiO |
PRK13635 |
energy-coupling factor ABC transporter ATP-binding protein; |
1-236 |
1.90e-25 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184195 [Multi-domain] Cd Length: 279 Bit Score: 101.63 E-value: 1.90e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKA 79
Cdd:PRK13635 1 MKEEIIRVEHISFRYPDAATY--ALKDVSFSVYEgEWVAIVGHNGSGKSTLAKLLNGLL----LPEAGTITVGGMVLSEE 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRlmrgKRMAMILQDPKyslNPVM--TIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIRDperVFDLFPHEVSG 157
Cdd:PRK13635 75 TVWDVR----RQVGMVFQNPD---NQFVgaTVQDDVAFGLENI-GVPREEMVERVDQALRQVGMED---FLNREPHRLSG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 158 GMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEE 236
Cdd:PRK13635 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEILEE 221
|
|
| ABCC_MRP_Like |
cd03228 |
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP ... |
6-232 |
1.91e-25 |
|
ATP-binding cassette domain of multidrug resistance protein-like transporters; The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213195 [Multi-domain] Cd Length: 171 Bit Score: 98.99 E-value: 1.91e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:cd03228 1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPgEKVAIVGPSGSGKSTLLKLLLRLyDPTSGEI-----LIDGVDLRDLDLES 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgKRMAMILQDPkyslnpvmtigrQIME-TLRthEKIgssearqrtlamleavqirdpervfdlfpheVSGGMGQR 162
Cdd:cd03228 74 LR----KNIAYVPQDP------------FLFSgTIR--ENI-------------------------------LSGGQRQR 104
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVsSFCDRVLVMYAGK 232
Cdd:cd03228 105 IAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTV--IVIAHRLSTI-RDADRIIVLDDGR 171
|
|
| CydD |
COG4988 |
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease ... |
2-236 |
2.51e-25 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444012 [Multi-domain] Cd Length: 563 Bit Score: 104.84 E-value: 2.51e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 2 SASLLTVENLRVSFPTRTglvEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDIDLLKAS 80
Cdd:COG4988 333 GPPSIELEDVSFSYPGGR---PALDGLSLTIpPGERVALVGPSGAGKSTLLNLLLGF----LPPYSGSILINGVDLSDLD 405
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 AKERRlmrgKRMAMILQDPkyslnpvmtigrQIME-TLRTHEKIGSSEA-RQRTLAMLEAVQIRDperVFDLFPHE---- 154
Cdd:COG4988 406 PASWR----RQIAWVPQNP------------YLFAgTIRENLRLGRPDAsDEELEAALEAAGLDE---FVAALPDGldtp 466
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 -------VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVsSFCDRVLV 227
Cdd:COG4988 467 lgeggrgLSGGQAQRLALARALLRDAPLLLLDEPTAHLDAETEAEILQALRRLAKGR--TVILITHRLALL-AQADRILV 543
|
....*....
gi 736475199 228 MYAGKVVEE 236
Cdd:COG4988 544 LDDGRIVEQ 552
|
|
| LivF |
COG0410 |
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid ... |
3-244 |
2.83e-25 |
|
ABC-type branched-chain amino acid transport system, ATPase component LivF [Amino acid transport and metabolism];
Pssm-ID: 440179 [Multi-domain] Cd Length: 236 Bit Score: 100.06 E-value: 2.83e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASA 81
Cdd:COG0410 1 MPMLEVENLHAGY----GGIHVLHGVSLEVEEgEIVALLGRNGAGKTTLLKAISGLLP----PRSGSIRFDGEDITGLPP 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 kERRLMRGkrMAMILQdpkyslnpvmtiGRQI------METLRTHEKIGSSEARQRtlamleavqiRDPERVFDLFPH-- 153
Cdd:COG0410 73 -HRIARLG--IGYVPE------------GRRIfpsltvEENLLLGAYARRDRAEVR----------ADLERVYELFPRlk 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 --------EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRV 225
Cdd:COG0410 128 errrqragTLSGGEQQMLAIGRALMSRPKLLLLDEPSLGLAPLIVEEIFEIIRRL-NREGVTILLVEQNARFALEIADRA 206
|
250
....*....|....*....
gi 736475199 226 LVMYAGKVVEELASANLKE 244
Cdd:COG0410 207 YVLERGRIVLEGTAAELLA 225
|
|
| ABC_PstB_phosphate_transporter |
cd03260 |
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of ... |
6-235 |
3.26e-25 |
|
ATP-binding cassette domain of the phosphate transport system; Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Pssm-ID: 213227 [Multi-domain] Cd Length: 227 Bit Score: 99.95 E-value: 3.26e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGL--TPKNARIEADTLRFG-DIDLLKASA 81
Cdd:cd03260 1 IELRDLNVYY----GDKHALKDISLDIpKGEITALIGPSGCGKSTLLRLLNRLndLIPGAPDEGEVLLDGkDIYDLDVDV 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRlmrgKRMAMILQDPkyslNPV-MTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIrdPERVFD-LFPHEVSGGM 159
Cdd:cd03260 77 LELR----RRVGMVFQKP----NPFpGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL--WDEVKDrLHALGLSGGQ 146
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrgMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03260 147 QQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE--YTIVIVTHNMQQAARVADRTAFLLNGRLVE 220
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
5-246 |
5.05e-25 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 103.57 E-value: 5.05e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVsfPTRTGlVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKE 83
Cdd:COG3845 257 VLEVENLSV--RDDRG-VPALKDVSLEVRAgEILGIAGVAGNGQSELAEALAGLRP----PASGSIRLDGEDITGLSPRE 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRgkrMAMILQDP-KYSLNPVMTIGRQIMetLRTHEK--------IGSSEARQRTLAMLEAVQIR--DPERVFDLFp 152
Cdd:COG3845 330 RRRLG---VAYIPEDRlGRGLVPDMSVAENLI--LGRYRRppfsrggfLDRKAIRAFAEELIEEFDVRtpGPDTPARSL- 403
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 153 hevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:COG3845 404 ---SGGNQQKVILARELSRDPKLLIAAQPTRGLDVGAIEFIHQRLLEL-RDAGAAVLLISEDLDEILALSDRIAVMYEGR 479
|
250
....*....|....
gi 736475199 233 VVEELASANLKEAK 246
Cdd:COG3845 480 IVGEVPAAEATREE 493
|
|
| MalK |
COG3839 |
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; ... |
6-234 |
5.64e-25 |
|
ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism];
Pssm-ID: 443050 [Multi-domain] Cd Length: 352 Bit Score: 101.69 E-value: 5.64e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKER 84
Cdd:COG3839 4 LELENVSKSY----GGVEALKDIDLDIEDgEFLVLLGPSGCGKSTLLRMIAGLE----DPTSGEILIGGRDVTDLPPKDR 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgkrMAMILQDpkYSLNPVMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVM 164
Cdd:COG3839 76 N------IAMVFQS--YALYPHMTVYENIAFPLKLR-KVPKAEIDRRVREAAELLGL---EDLLDRKPKQLSGGQRQRVA 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVT--VQLEVLdiLDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:COG3839 144 LGRALVREPKVFLLDEPLSNLDAKlrVEMRAE--IKRLHRRLGTTTIYVTHDQVEAMTLADRIAVMNDGRIQ 213
|
|
| PhnL |
COG4778 |
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion ... |
1-228 |
6.56e-25 |
|
Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnL [Inorganic ion transport and metabolism];
Pssm-ID: 443809 [Multi-domain] Cd Length: 229 Bit Score: 99.05 E-value: 6.56e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSAsLLTVENLRVSFP--TRTGL-VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIEADTlRFGDID 75
Cdd:COG4778 1 MTT-LLEVENLSKTFTlhLQGGKrLPVLDGVSFSVAAgECVALTGPSGAGKSTLLKCIYGnYLPDSGSILVRH-DGGWVD 78
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 76 LlkASAKERRLMRGKRMamilqdpkyslnpvmTIG----------RQ-----IMETLRTHEkIGSSEARQRTLAMLEAVQ 140
Cdd:COG4778 79 L--AQASPREILALRRR---------------TIGyvsqflrvipRVsaldvVAEPLLERG-VDREEARARARELLARLN 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 141 IrdPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSS 220
Cdd:COG4778 141 L--PERLWDLPPATFSGGEQQRVNIARGFIADPPLLLLDEPTASLDAANRAVVVELIEEA-KARGTAIIGIFHDEEVREA 217
|
....*...
gi 736475199 221 FCDRVLVM 228
Cdd:COG4778 218 VADRVVDV 225
|
|
| ABC_ModC_like |
cd03299 |
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely ... |
25-235 |
8.37e-25 |
|
ATP-binding cassette domain similar to the molybdate transporter; Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213266 [Multi-domain] Cd Length: 235 Bit Score: 98.95 E-value: 8.37e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 25 VRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadTLRFGDIDLLKAsakERRlmrgkRMAMILQDpkYS 102
Cdd:cd03299 15 LKNVSLEVERgDYFVILGPTGSGKSVLLETIAGfIKPDSGKI---LLNGKDITNLPP---EKR-----DISYVPQN--YA 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 103 LNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPT 182
Cdd:cd03299 82 LFPHMTVYKNIAYGLK-KRKVDKKEIERKVLEIAEMLGI---DHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPF 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 736475199 183 SALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03299 158 SALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ 210
|
|
| ECF_ATPase_1 |
TIGR04520 |
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette ... |
24-236 |
9.78e-25 |
|
energy-coupling factor transporter ATPase; Members of this family are ATP-binding cassette (ABC) proteins by homology, but belong to energy coupling factor (ECF) transport systems. The architecture in general is two ATPase subunits (or a double-length fusion protein), a T component, and a substrate capture (S) component that is highly variable, and may be interchangeable in genomes with only one T component. This model identifies many but not examples of the upstream member of the pair of ECF ATPases in Firmicutes and Mollicutes. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 275313 [Multi-domain] Cd Length: 268 Bit Score: 99.43 E-value: 9.78e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgdiDLLKASAKERRLMRgKRMAMILQDPKy 101
Cdd:TIGR04520 17 ALKNVSLSIEKgEFVAIIGHNGSGKSTLAKLLNGLlLPTSGKVTVD-------GLDTLDEENLWEIR-KKVGMVFQNPD- 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 102 slNpvmtigrQI------------METLRthekIGSSEARQRTLAMLEAVQI---RDPErvfdlfPHEVSGGMGQRVMIA 166
Cdd:TIGR04520 88 --N-------QFvgatveddvafgLENLG----VPREEMRKRVDEALKLVGMedfRDRE------PHLLSGGQKQRVAIA 148
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 167 MMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVsSFCDRVLVMYAGKVVEE 236
Cdd:TIGR04520 149 GVLAMRPDIIILDEATSMLDPKGRKEVLETIRKLNKEEGITVISITHDMEEA-VLADRVIVMNKGKIVAE 217
|
|
| PRK10619 |
PRK10619 |
histidine ABC transporter ATP-binding protein HisP; |
1-236 |
1.46e-24 |
|
histidine ABC transporter ATP-binding protein HisP;
Pssm-ID: 182592 [Multi-domain] Cd Length: 257 Bit Score: 98.89 E-value: 1.46e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRvsfpTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARI-----EADTLRFGD 73
Cdd:PRK10619 1 MSENKLNVIDLH----KRYGEHEVLKGVSLQANAgDVISIIGSSGSGKSTFLRCINFLeKPSEGSIvvngqTINLVRDKD 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 74 IDLLKASAKERRLMRgKRMAMILQdpKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIrdPERVFDLFPH 153
Cdd:PRK10619 77 GQLKVADKNQLRLLR-TRLTMVFQ--HFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGI--DERAQGKYPV 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVrDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK10619 152 HLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA-EEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
|
...
gi 736475199 234 VEE 236
Cdd:PRK10619 231 EEE 233
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
20-235 |
5.61e-24 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 100.65 E-value: 5.61e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 20 GLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLT-PKNARIEadtLRFGD--IDLLKASAKERRlmRGKR-MAM 94
Cdd:TIGR03269 295 GVVKAVDNVSLEVkEGEIFGIVGTSGAGKTTLSKIIAGVLePTSGEVN---VRVGDewVDMTKPGPDGRG--RAKRyIGI 369
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 95 ILQDpkYSLNPvmtiGRQIMETLRthEKIG----SSEARQRTLAMLEAVQIRD--PERVFDLFPHEVSGGMGQRVMIAMM 168
Cdd:TIGR03269 370 LHQE--YDLYP----HRTVLDNLT--EAIGlelpDELARMKAVITLKMVGFDEekAEEILDKYPDELSEGERHRVALAQV 441
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 169 LVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:TIGR03269 442 LIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK 508
|
|
| CydC |
COG4987 |
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease ... |
6-251 |
2.07e-23 |
|
ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444011 [Multi-domain] Cd Length: 569 Bit Score: 99.07 E-value: 2.07e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVeaVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKER 84
Cdd:COG4987 334 LELEDVSFRYPGAGRPV--LDGLSLTLPPgERVAIVGPSGSGKSTLLALLLRFLD----PQSGSITLGGVDLRDLDEDDL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgKRMAMILQDPkYSLNpvMTIgrqiMETLRthekIGSSEARQRTL-AMLEAVQIRD-----PERvFDLFPHE---- 154
Cdd:COG4987 408 R----RRIAVVPQRP-HLFD--TTL----RENLR----LARPDATDEELwAALERVGLGDwlaalPDG-LDTWLGEggrr 471
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSFcDRVLVMYAGKVV 234
Cdd:COG4987 472 LSGGERRRLALARALLRDAPILLLDEPTEGLDAATEQALLADLLEALAGR--TVLLITHRLAGLERM-DRILVLEDGRIV 548
|
250
....*....|....*..
gi 736475199 235 EELASANLKEAKHPYTQ 251
Cdd:COG4987 549 EQGTHEELLAQNGRYRQ 565
|
|
| met_CoM_red_A2 |
TIGR03269 |
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in ... |
6-236 |
2.38e-23 |
|
methyl coenzyme M reductase system, component A2; The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. [Energy metabolism, Methanogenesis]
Pssm-ID: 132313 [Multi-domain] Cd Length: 520 Bit Score: 99.11 E-value: 2.38e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKS--------------QTGRAI--MGLTPKNARIE--- 65
Cdd:TIGR03269 1 IEVKNLTKKF----DGKEVLKNISFTIEEgEVLGILGRSGAGKSvlmhvlrgmdqyepTSGRIIyhVALCEKCGYVErps 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 66 ---------ADTLRFGDIDLLKASAKERRLMRgKRMAMILQDpKYSLNPVMTIGRQIMETLrthEKIGSS--EARQRTLA 134
Cdd:TIGR03269 77 kvgepcpvcGGTLEPEEVDFWNLSDKLRRRIR-KRIAIMLQR-TFALYGDDTVLDNVLEAL---EEIGYEgkEAVGRAVD 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 135 MLEAVQIRdpERVFDLfPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHD 214
Cdd:TIGR03269 152 LIEMVQLS--HRITHI-ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
|
250 260
....*....|....*....|..
gi 736475199 215 LRLVSSFCDRVLVMYAGKVVEE 236
Cdd:TIGR03269 229 PEVIEDLSDKAIWLENGEIKEE 250
|
|
| ABC_OpuCA_Osmoprotection |
cd03295 |
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding ... |
6-235 |
2.40e-23 |
|
ATP-binding cassette domain of the osmoprotectant transporter; OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213262 [Multi-domain] Cd Length: 242 Bit Score: 95.45 E-value: 2.40e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPtrtGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAImgltpkNARIEAD--TLRFGDIDLLKASAK 82
Cdd:cd03295 1 IEFENVTKRYG---GGKKAVNNLNLEIaKGEFLVLIGPSGSGKTTTMKMI------NRLIEPTsgEIFIDGEDIREQDPV 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRlmrgKRMAMILQdpKYSLNPVMTIGRQImETLRTHEKIGSSEARQRTLAMLEAVQIrDPERVFDLFPHEVSGGMGQR 162
Cdd:cd03295 72 ELR----RKIGYVIQ--QIGLFPHMTVEENI-ALVPKLLKWPKEKIRERADELLALVGL-DPAEFADRYPHELSGGQQQR 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:cd03295 144 VGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ 216
|
|
| ABC_subfamily_A |
cd03263 |
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily ... |
6-234 |
3.37e-23 |
|
ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Pssm-ID: 213230 [Multi-domain] Cd Length: 220 Bit Score: 94.49 E-value: 3.37e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKASAKER 84
Cdd:cd03263 1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKgEIFGLLGHNGAGKTTTLKMLTGELRPTS---------GTAYINGYSIRTD 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRGKRMAMILQDPkySLNPVMTIgrqiMETLRTHEK---IGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQ 161
Cdd:cd03263 70 RKAARQSLGYCPQFD--ALFDELTV----REHLRFYARlkgLPKSEIKEEVELLLRVLGLTDKA---NKRARTLSGGMKR 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSI--ILTTHSMDEAEALCDRIAIMSDGKLR 211
|
|
| ABC_Carb_Monos_I |
cd03216 |
First domain of the ATP-binding cassette component of monosaccharide transport system; This ... |
6-234 |
6.95e-23 |
|
First domain of the ATP-binding cassette component of monosaccharide transport system; This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Pssm-ID: 213183 [Multi-domain] Cd Length: 163 Bit Score: 92.11 E-value: 6.95e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTrtglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIdllkasaker 84
Cdd:cd03216 1 LELRGITKRFGG----VKALDGVSLSVRRgEVHALLGENGAGKSTLMKILSGLYKPDS---------GEI---------- 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 rLMRGKRMAMilqdpkysLNPvmtigrqimetlrthekigsSEARQRTLAMleavqirdperVFDLfphevSGGMGQRVM 164
Cdd:cd03216 58 -LVDGKEVSF--------ASP--------------------RDARRAGIAM-----------VYQL-----SVGERQMVE 92
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRL-RAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
|
| cbiO |
PRK13637 |
energy-coupling factor transporter ATPase; |
23-234 |
7.65e-23 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237455 [Multi-domain] Cd Length: 287 Bit Score: 94.73 E-value: 7.65e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 23 EAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgDIDLLKASAKERRLMrgKRMAMILQDPK 100
Cdd:PRK13637 21 KALDNVNIEIeDGEFVGLIGHTGSGKSTLIQHLNGLlKPTSGKIIID-----GVDITDKKVKLSDIR--KKVGLVFQYPE 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 101 YSLNPvMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIrDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADE 180
Cdd:PRK13637 94 YQLFE-ETIEKDIAFGPI-NLGLSEEEIENRVKRAMNIVGL-DYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 736475199 181 PTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK13637 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCE 224
|
|
| glnQ |
PRK09493 |
glutamine ABC transporter ATP-binding protein GlnQ; |
39-236 |
1.07e-22 |
|
glutamine ABC transporter ATP-binding protein GlnQ;
Pssm-ID: 181906 [Multi-domain] Cd Length: 240 Bit Score: 93.62 E-value: 1.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKERrLMRgKRMAMILQdpKYSLNPVMTIGRQIMETLR 118
Cdd:PRK09493 32 IIGPSGSGKSTLLRCINKLEE----ITSGDLIVDGLKVNDPKVDER-LIR-QEAGMVFQ--QFYLFPHLTALENVMFGPL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 119 THEKIGSSEARQRTLAMLEAVQIRdpERVfDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILD 198
Cdd:PRK09493 104 RVRGASKEEAEKQARELLAKVGLA--ERA-HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQ 180
|
170 180 190
....*....|....*....|....*....|....*...
gi 736475199 199 KLVrDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:PRK09493 181 DLA-EEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAED 217
|
|
| ABC_FtsE |
cd03292 |
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where ... |
22-233 |
1.57e-22 |
|
Cell division ATP-binding protein FtsE; The FtsEX complex resembles an ABC transporter, where FtsE is the ATPase and the membrane subunit FtsX resembles a permease subunit. But rather than transporting any substrate, the complex acts in cell division by undergoing conformational changes that alter the activity of cell wall hydrolases located outside the plasma membrane. The complex is widely conserved in bacteria, but also extremely divergent in sequence between different lineages
Pssm-ID: 213259 [Multi-domain] Cd Length: 214 Bit Score: 92.47 E-value: 1.57e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 22 VEAVRGVSFTLGR-ERLGIVGESGSGKSqtgrAIMGLTPKNARIEADTLRFGDIDLLKASAKERRLMRgKRMAMILQDPK 100
Cdd:cd03292 14 TAALDGINISISAgEFVFLVGPSGAGKS----TLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLR-RKIGVVFQDFR 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 101 ysLNPVMTIGRQIMETLRTHEKiGSSEARQRTLAMLEAVQIRDPERVFdlfPHEVSGGMGQRVMIAMMLVCGPELLIADE 180
Cdd:cd03292 89 --LLPDRNVYENVAFALEVTGV-PPREIRKRVPAALELVGLSHKHRAL---PAELSGGEQQRVAIARAIVNSPTILIADE 162
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 736475199 181 PTSALDVTVQLEVLDILDKlVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:cd03292 163 PTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
|
| ABC_drug_resistance_like |
cd03264 |
ABC-type multidrug transport system, ATPase component; The biological function of this family ... |
6-236 |
1.79e-22 |
|
ABC-type multidrug transport system, ATPase component; The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213231 [Multi-domain] Cd Length: 211 Bit Score: 92.26 E-value: 1.79e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRtglvEAVRGVSFTLGRERLGIVGESGSGKSQTGRAIMGLTPKnariEADTLRFGDIDLLKASAKERR 85
Cdd:cd03264 1 LQLENLTKRYGKK----RALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPP----SSGTIRIDGQDVLKQPQKLRR 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 lmrgkRMAMILQDPKYSlnPVMTIgRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRD--PERVFDLfphevSGGMGQRV 163
Cdd:cd03264 73 -----RIGYLPQEFGVY--PNFTV-REFLDYIAWLKGIPSKEVKARVDEVLELVNLGDraKKKIGSL-----SGGMRRRV 139
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDR--IVILSTHIVEDVESLCNQVAVLNKGKLVFE 210
|
|
| MglA |
COG1129 |
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; |
2-246 |
1.87e-22 |
|
ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440745 [Multi-domain] Cd Length: 497 Bit Score: 96.24 E-value: 1.87e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 2 SASLLTVENLRVSFPTrtglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA---RIEADTLRFGDIdll 77
Cdd:COG1129 1 AEPLLEMRGISKSFGG----VKALDGVSLELRPgEVHALLGENGAGKSTLMKILSGVYQPDSgeiLLDGEPVRFRSP--- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 78 kASAKERRLmrgkrmAMILQDPkySLNPVMTI------GRQImetlRTHEKIGSSEARQRTLAMLEAVQIR-DPE-RVFD 149
Cdd:COG1129 74 -RDAQAAGI------AIIHQEL--NLVPNLSVaeniflGREP----RRGGLIDWRAMRRRARELLARLGLDiDPDtPVGD 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 150 LfphevsgGMGQR--VMIAMMLVCGPELLIADEPTSALDVTvqlEV---LDILDKLvRDRGMGLIFVSHDLRLVSSFCDR 224
Cdd:COG1129 141 L-------SVAQQqlVEIARALSRDARVLILDEPTASLTER---EVerlFRIIRRL-KAQGVAIIYISHRLDEVFEIADR 209
|
250 260
....*....|....*....|..
gi 736475199 225 VLVMYAGKVVEELASANLKEAK 246
Cdd:COG1129 210 VTVLRDGRLVGTGPVAELTEDE 231
|
|
| ProV |
COG4175 |
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and ... |
18-234 |
1.96e-22 |
|
ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443334 [Multi-domain] Cd Length: 389 Bit Score: 95.17 E-value: 1.96e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 18 RTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIE--ADTLRFGDIDLLKASAKERRLMRGKRMAM 94
Cdd:COG4175 36 KTGQTVGVNDASFDVEEgEIFVIMGLSGSGKSTLVRCLNRL------IEptAGEVLIDGEDITKLSKKELRELRRKKMSM 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 95 ILQdpKYSLNPVMTI------GRQIMetlrtheKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMIAMM 168
Cdd:COG4175 110 VFQ--HFALLPHRTVlenvafGLEIQ-------GVPKAERRERAREALELVGLAGWE---DSYPDELSGGMQQRVGLARA 177
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 169 LVCGPELLIADEPTSALD----VTVQLEVLDILDKLVRDrgmgLIFVSHDL----RLvssfCDRVLVMYAGKVV 234
Cdd:COG4175 178 LATDPDILLMDEAFSALDplirREMQDELLELQAKLKKT----IVFITHDLdealRL----GDRIAIMKDGRIV 243
|
|
| btuD |
PRK09536 |
corrinoid ABC transporter ATPase; Reviewed |
3-233 |
2.56e-22 |
|
corrinoid ABC transporter ATPase; Reviewed
Pssm-ID: 236554 [Multi-domain] Cd Length: 402 Bit Score: 95.29 E-value: 2.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPknariEADTLRFGDIDLLKAS 80
Cdd:PRK09536 1 MPMIDVSDLSVEF----GDTTVLDGVDLSVREgSLVGLVGPNGAGKTTLLRAINGtLTP-----TAGTVLVAGDDVEALS 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 AKERrlmrGKRMAMILQDPKYSLNpvmTIGRQIMETLRT-HEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGM 159
Cdd:PRK09536 72 ARAA----SRRVASVPQDTSLSFE---FDVRQVVEMGRTpHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGE 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIHDLDLAARYCDELVLLADGRV 217
|
|
| L_ocin_972_ABC |
TIGR03608 |
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly ... |
8-226 |
2.77e-22 |
|
putative bacteriocin export ABC transporter, lactococcin 972 group; A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]
Pssm-ID: 188353 [Multi-domain] Cd Length: 206 Bit Score: 91.52 E-value: 2.77e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFPTRTGLveavRGVSFTLGR-ERLGIVGESGSGKSqTGRAIMGLTPKnarIEADTLRFGDIDLLKASAKERRL 86
Cdd:TIGR03608 1 LKNISKKFGDKVIL----DDLNLTIEKgKMYAIIGESGSGKS-TLLNIIGLLEK---FDSGQVYLNGQETPPLNSKKASK 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 87 MRGKRMAMILQDpkYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIR-DPERvfdlFPHEVSGGMGQRVMI 165
Cdd:TIGR03608 73 FRREKLGYLFQN--FALIENETVEENLDLGLK-YKKLSKKEKREKKKEALEKVGLNlKLKQ----KIYELSGGEQQRVAL 145
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 166 AMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVrDRGMGLIFVSHDLrLVSSFCDRVL 226
Cdd:TIGR03608 146 ARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELN-DEGKTIIIVTHDP-EVAKQADRVI 204
|
|
| hmuV |
PRK13548 |
hemin importer ATP-binding subunit; Provisional |
5-236 |
2.99e-22 |
|
hemin importer ATP-binding subunit; Provisional
Pssm-ID: 237422 [Multi-domain] Cd Length: 258 Bit Score: 92.53 E-value: 2.99e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLveavRGVSFTL--GrERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadtlRFGDIDLLKASA 81
Cdd:PRK13548 2 MLEARNLSVRLGGRTLL----DDVSLTLrpG-EVVAILGPNGAGKSTLLRALSGeLSPDSGEV-----RLNGRPLADWSP 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRLMRgkrmAMILQDPK----YSLNPVMTIGRQIMETLRTHEKIGSSEARQRT-LAMLEavqirdpERVFdlfpHEVS 156
Cdd:PRK13548 72 AELARRR----AVLPQHSSlsfpFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVdLAHLA-------GRDY----PQLS 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 157 GGMGQRVMIAMMLV------CGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYA 230
Cdd:PRK13548 137 GGEQQRVQLARVLAqlwepdGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQ 216
|
....*.
gi 736475199 231 GKVVEE 236
Cdd:PRK13548 217 GRLVAD 222
|
|
| ThiQ |
COG3840 |
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism]; |
6-234 |
4.35e-22 |
|
ABC-type thiamine transport system, ATPase component ThiQ [Coenzyme transport and metabolism];
Pssm-ID: 443051 [Multi-domain] Cd Length: 232 Bit Score: 91.74 E-value: 4.35e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglVEAvrgvSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:COG3840 2 LRLDDLTYRYGDFP--LRF----DLTIAAgERVAILGPSGAGKSTLLNLIAGfLPPDSGRI-----LWNGQDLTALPPAE 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgkrMAMILQDpkYSLNPVMTIGRQIMETLRTHEKIgSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRV 163
Cdd:COG3840 71 RP------VSMLFQE--NNLFPHLTVAQNIGLGLRPGLKL-TAEQRAQVEQALERVGLAGLL---DRLPGQLSGGQRQRV 138
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:COG3840 139 ALARCLVRKRPILLLDEPFSALDPALRQEMLDLVDELCRERGLTVLMVTHDPEDAARIADRVLLVADGRIA 209
|
|
| ModC |
COG4148 |
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and ... |
28-234 |
6.56e-22 |
|
ABC-type molybdate transport system, ATPase component ModC [Inorganic ion transport and metabolism]; ABC-type molybdate transport system, ATPase component ModC is part of the Pathway/BioSystem: Molybdopterin biosynthesis
Pssm-ID: 443319 [Multi-domain] Cd Length: 358 Bit Score: 93.63 E-value: 6.56e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 28 VSFTL-GRERLGIVGESGSGKSQTGRAIMGLT-PKNARIeadtlRFGDIDLLKASAK-----ERRlmrgkRMAMILQDPk 100
Cdd:COG4148 18 VDFTLpGRGVTALFGPSGSGKTTLLRAIAGLErPDSGRI-----RLGGEVLQDSARGiflppHRR-----RIGYVFQEA- 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 101 ySLNPVMTIGRQIMETLRthekigSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADE 180
Cdd:COG4148 87 -RLFPHLSVRGNLLYGRK------RAPRAERRISFDEVVELLGIGHLLDRRPATLSGGERQRVAIGRALLSSPRLLLMDE 159
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 736475199 181 PTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:COG4148 160 PLAALDLARKAEILPYLERLRDELDIPILYVSHSLDEVARLADHVVLLEQGRVV 213
|
|
| CcmA |
COG4133 |
ABC-type transport system involved in cytochrome c biogenesis, ATPase component ... |
5-228 |
9.15e-22 |
|
ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 443308 [Multi-domain] Cd Length: 206 Bit Score: 90.23 E-value: 9.15e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLveavRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKASAKE 83
Cdd:COG4133 2 MLEAENLSCRRGERLLF----SGLSFTLAAgEALALTGPNGSGKTTLLRILAGLLPPSA---------GEVLWNGEPIRD 68
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRGKRMAMILQDPkySLNPVMTIGrqimETLRTHEKI-GSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQR 162
Cdd:COG4133 69 AREDYRRRLAYLGHAD--GLKPELTVR----ENLRFWAALyGLRADREAIDEALEAVGLAGLA---DLPVRQLSAGQKRR 139
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMgLIFVSHDLRLVSsfCDRVLVM 228
Cdd:COG4133 140 VALARLLLSPAPLWLLDEPFTALDAAGVALLAELIAAHLARGGA-VLLTTHQPLELA--AARVLDL 202
|
|
| PRK11264 |
PRK11264 |
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional |
4-255 |
1.44e-21 |
|
putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Pssm-ID: 183063 [Multi-domain] Cd Length: 250 Bit Score: 90.58 E-value: 1.44e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTGLveavRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPknariEADTLRFGD--IDLLKA 79
Cdd:PRK11264 2 SAIEVKNLVKKFHGQTVL----HGIDLEVKPgEVVAIIGPSGSGKTTLLRCINLLeQP-----EAGTIRVGDitIDTARS 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRLMRGKRMAMILQDPKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGM 159
Cdd:PRK11264 73 LSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKE---TSYPRRLSGGQ 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE-LA 238
Cdd:PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEK-RTMVIVTHEMSFARDVADRAIFMDQGRIVEQgPA 228
|
250
....*....|....*..
gi 736475199 239 SANLKEAKHPYTQGLLN 255
Cdd:PRK11264 229 KALFADPQQPRTRQFLE 245
|
|
| PRK10851 |
PRK10851 |
sulfate/thiosulfate ABC transporter ATP-binding protein CysA; |
35-269 |
1.96e-21 |
|
sulfate/thiosulfate ABC transporter ATP-binding protein CysA;
Pssm-ID: 182778 [Multi-domain] Cd Length: 353 Bit Score: 92.07 E-value: 1.96e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGLTPKNArieaDTLRFGDIDLLKASAKERRLmrgkrmAMILQDpkYSLNPVMTIGRQI- 113
Cdd:PRK10851 29 QMVALLGPSGSGKTTLLRIIAGLEHQTS----GHIRFHGTDVSRLHARDRKV------GFVFQH--YALFRHMTVFDNIa 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 114 --METLRTHEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQL 191
Cdd:PRK10851 97 fgLTVLPRRERPNAAAIKAKVTQLLEMVQL---AHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRK 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 192 EVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVveELASANLKEAKHPYTQ------GLLNCLP------- 258
Cdd:PRK10851 174 ELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNI--EQAGTPDQVWREPATRfvlefmGEVNRLQgtirggq 251
|
250
....*....|..
gi 736475199 259 -QIGGHRHPLPV 269
Cdd:PRK10851 252 fHVGAHRWPLGY 263
|
|
| drrA |
TIGR01188 |
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin ... |
20-244 |
2.46e-21 |
|
daunorubicin resistance ABC transporter ATP-binding subunit; This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other]
Pssm-ID: 130256 [Multi-domain] Cd Length: 302 Bit Score: 90.91 E-value: 2.46e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 20 GLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieaDTLRFGDIDLLKASAKERRlmrgkRMAMILQd 98
Cdd:TIGR01188 4 GDFKAVDGVNFKVREgEVFGFLGPNGAGKTTTIRMLTTLLRPTS----GTARVAGYDVVREPRKVRR-----SIGIVPQ- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 99 pKYSLNPVMTiGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMIAMMLVCGPELLIA 178
Cdd:TIGR01188 74 -YASVDEDLT-GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA---DRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 179 DEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANLKE 244
Cdd:TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKR 213
|
|
| lolD |
PRK11629 |
lipoprotein-releasing ABC transporter ATP-binding protein LolD; |
1-238 |
2.61e-21 |
|
lipoprotein-releasing ABC transporter ATP-binding protein LolD;
Pssm-ID: 183244 [Multi-domain] Cd Length: 233 Bit Score: 89.49 E-value: 2.61e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLK 78
Cdd:PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEgEMMAIVGSSGSGKSTLLHLLGGLdTPTSGDV-----IFNGQPMSK 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERRLMRGKRMAMILQdpKYSLNPVMTIGRQI-METLRTHEKigSSEARQRTLAMLEAVQI--RDPERvfdlfPHEV 155
Cdd:PRK11629 76 LSSAAKAELRNQKLGFIYQ--FHHLLPDFTALENVaMPLLIGKKK--PAEINSRALEMLAAVGLehRANHR-----PSEL 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFcDRVLVMYAGKVVE 235
Cdd:PRK11629 147 SGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTA 225
|
...
gi 736475199 236 ELA 238
Cdd:PRK11629 226 ELS 228
|
|
| FtsE |
TIGR02673 |
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC ... |
22-232 |
4.37e-21 |
|
cell division ATP-binding protein FtsE; This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. [Cellular processes, Cell division]
Pssm-ID: 131721 [Multi-domain] Cd Length: 214 Bit Score: 88.46 E-value: 4.37e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 22 VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIEAD-----TLRFGDIDLLkasakeRRlmrgkRMAM 94
Cdd:TIGR02673 15 VAALHDVSLHIRKgEFLFLTGPSGAGKTTLLKLLYGaLTPSRGQVRIAgedvnRLRGRQLPLL------RR-----RIGV 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 95 ILQDpkYSLNPVMTIGRQIMETLRThEKIGSSEARQRTLAMLEAVQIRDPERVFdlfPHEVSGGMGQRVMIAMMLVCGPE 174
Cdd:TIGR02673 84 VFQD--FRLLPDRTVYENVALPLEV-RGKKEREIQRRVGAALRQVGLEHKADAF---PEQLSGGEQQRVAIARAIVNSPP 157
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 175 LLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
|
| ABC_CysA_sulfate_importer |
cd03296 |
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex ... |
6-240 |
6.90e-21 |
|
ATP-binding cassette domain of the sulfate transporter; Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213263 [Multi-domain] Cd Length: 239 Bit Score: 88.55 E-value: 6.90e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:cd03296 3 IEVRNVSKRFGDFV----ALDDVSLDIpSGELVALLGPSGSGKTTLLRLIAGLeRPDSGTI-----LFGGEDATDVPVQE 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLmrgkrmAMILQDpkYSLNPVMTIGRQIMETLRT---HEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMG 160
Cdd:cd03296 74 RNV------GFVFQH--YALFRHMTVFDNVAFGLRVkprSERPPEAEIRAKVHELLKLVQL---DWLADRYPAQLSGGQR 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 161 QRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKvVEELASA 240
Cdd:cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR-IEQVGTP 221
|
|
| PRK10535 |
PRK10535 |
macrolide ABC transporter ATP-binding protein/permease MacB; |
3-278 |
8.64e-21 |
|
macrolide ABC transporter ATP-binding protein/permease MacB;
Pssm-ID: 182528 [Multi-domain] Cd Length: 648 Bit Score: 91.71 E-value: 8.64e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFPTRTGLVEAVRGVSFTL-GRERLGIVGESGSGKSqTGRAIMGLTPKNArieADTLRFGDIDLLKASA 81
Cdd:PRK10535 2 TALLELKDIRRSYPSGEEQVEVLKGISLDIyAGEMVAIVGASGSGKS-TLMNILGCLDKPT---SGTYRVAGQDVATLDA 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRLMRGKRMAMILQdpKYSLNPVMTiGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRdpERVfDLFPHEVSGGMGQ 161
Cdd:PRK10535 78 DALAQLRREHFGFIFQ--RYHLLSHLT-AAQNVEVPAVYAGLERKQRLLRAQELLQRLGLE--DRV-EYQPSQLSGGQQQ 151
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDlRLVSSFCDRVLVMYAGKVVEE---LA 238
Cdd:PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL-RDRGHTVIIVTHD-PQVAAQAERVIEIRDGEIVRNppaQE 229
|
250 260 270 280
....*....|....*....|....*....|....*....|
gi 736475199 239 SANLKEAKHPYTQGLLNCLPQIGGHRHPLPVlerkpEWRA 278
Cdd:PRK10535 230 KVNVAGGTEPVVNTASGWRQFVSGFREALTM-----AWRA 264
|
|
| modC_ABC |
TIGR02142 |
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding ... |
28-233 |
9.55e-21 |
|
molybdenum ABC transporter, ATP-binding protein; This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. [Transport and binding proteins, Anions]
Pssm-ID: 131197 [Multi-domain] Cd Length: 354 Bit Score: 90.17 E-value: 9.55e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 28 VSFTL-GRERLGIVGESGSGKSQTGRAIMGLT-PKNARIEADTlrfgdiDLLKASAKERRLMRGKR-MAMILQDPkysln 104
Cdd:TIGR02142 16 ADFTLpGQGVTAIFGRSGSGKTTLIRLIAGLTrPDEGEIVLNG------RTLFDSRKGIFLPPEKRrIGYVFQEA----- 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 105 pvmtigrqimeTLRTHEKIGSSEARQRTLAMLEAVQIRdPERVFDLF---------PHEVSGGMGQRVMIAMMLVCGPEL 175
Cdd:TIGR02142 85 -----------RLFPHLSVRGNLRYGMKRARPSERRIS-FERVIELLgighllgrlPGRLSGGEKQRVAIGRALLSSPRL 152
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 176 LIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRV 210
|
|
| cbiO |
PRK13631 |
cobalt transporter ATP-binding subunit; Provisional |
5-234 |
1.20e-20 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237451 [Multi-domain] Cd Length: 320 Bit Score: 89.52 E-value: 1.20e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRT-GLVEAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFG---DIDLLK 78
Cdd:PRK13631 21 ILRVKNLYCVFDEKQeNELVALNNISYTFEKNKIyFIIGNSGSGKSTLVTHFNGLiKSKYGTIQVGDIYIGdkkNNHELI 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERRLMRGKRM----AMILQDPKYSLNPVmTIGRQIM---ETLRTHEkigsSEARQRTLAMLEAVQIRDPerVFDLF 151
Cdd:PRK13631 101 TNPYSKKIKNFKELrrrvSMVFQFPEYQLFKD-TIEKDIMfgpVALGVKK----SEAKKLAKFYLNKMGLDDS--YLERS 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 152 PHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILdKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:PRK13631 174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLI-LDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252
|
...
gi 736475199 232 KVV 234
Cdd:PRK13631 253 KIL 255
|
|
| ABC_BcrA_bacitracin_resist |
cd03268 |
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily ... |
6-236 |
1.24e-20 |
|
ATP-binding cassette domain of the bacitracin-resistance transporter; The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Pssm-ID: 213235 [Multi-domain] Cd Length: 208 Bit Score: 87.27 E-value: 1.24e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIdLLKASAKER 84
Cdd:cd03268 1 LKTNDLTKTYGKKR----VLDDISLHVKKgEIYGFLGPNGAGKTTTMKIILGLIKPDS---------GEI-TFDGKSYQK 66
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRGKRMAMILQDPkySLNPVMTIgrqiMETLRTHEKI--GSSEARQRTLAMLEAVQIRDpERVFDLfphevSGGMGQR 162
Cdd:cd03268 67 NIEALRRIGALIEAP--GFYPNLTA----RENLRLLARLlgIRKKRIDEVLDVVGLKDSAK-KKVKGF-----SLGMKQR 134
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:cd03268 135 LGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSL-RDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207
|
|
| potG |
PRK11607 |
putrescine ABC transporter ATP-binding subunit PotG; |
5-235 |
5.81e-20 |
|
putrescine ABC transporter ATP-binding subunit PotG;
Pssm-ID: 183226 [Multi-domain] Cd Length: 377 Bit Score: 88.35 E-value: 5.81e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLrfgdiDLLKASAK 82
Cdd:PRK11607 19 LLEIRNLTKSFDGQ----HAVDDVSLTIYKgEIFALLGASGCGKSTLLRMLAGFeQPTAGQIMLDGV-----DLSHVPPY 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLmrgkrmAMILQdpKYSLNPVMTIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRD-PERVfdlfPHEVSGGMGQ 161
Cdd:PRK11607 90 QRPI------NMMFQ--SYALFPHMTVEQNIAFGLK-QDKLPKAEIASRVNEMLGLVHMQEfAKRK----PHQLSGGQRQ 156
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTV----QLEVLDILDKLvrdrGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLrdrmQLEVVDILERV----GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQ 230
|
|
| ArtP |
COG4161 |
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]; |
20-236 |
9.05e-20 |
|
ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism];
Pssm-ID: 443326 [Multi-domain] Cd Length: 242 Bit Score: 85.45 E-value: 9.05e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 20 GLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRaIMGL--TPKNARIEADTLRFgdiDL-LKASAKERRLMRGKrMAMI 95
Cdd:COG4161 13 GSHQALFDINLECPSgETLVLLGPSGAGKSSLLR-VLNLleTPDSGQLNIAGHQF---DFsQKPSEKAIRLLRQK-VGMV 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 96 LQdpKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMIAMMLVCGPEL 175
Cdd:COG4161 88 FQ--QYNLWPHLTVMENLIEAPCKVLGLSKEQAREKAMKLLARLRLTDKA---DRFPLHLSGGQQQRVAIARALMMEPQV 162
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 176 LIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:COG4161 163 LLFDEPTAALDPEITAQVVEIIREL-SQTGITQVIVTHEVEFARKVASQVVYMEKGRIIEQ 222
|
|
| PRK10070 |
PRK10070 |
proline/glycine betaine ABC transporter ATP-binding protein ProV; |
18-235 |
9.43e-20 |
|
proline/glycine betaine ABC transporter ATP-binding protein ProV;
Pssm-ID: 182221 [Multi-domain] Cd Length: 400 Bit Score: 87.78 E-value: 9.43e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 18 RTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLT-PKNARIEADtlrfgDIDLLKASAKERRLMRGKRMAMI 95
Cdd:PRK10070 37 KTGLSLGVKDASLAIEEgEIFVIMGLSGSGKSTMVRLLNRLIePTRGQVLID-----GVDIAKISDAELREVRRKKIAMV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 96 LQdpKYSLNPVMTIgrqiMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPEL 175
Cdd:PRK10070 112 FQ--SFALMPHMTV----LDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI 185
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 176 LIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK10070 186 LLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ 245
|
|
| cbiO |
PRK13646 |
energy-coupling factor transporter ATPase; |
23-242 |
1.37e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184205 [Multi-domain] Cd Length: 286 Bit Score: 85.99 E-value: 1.37e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 23 EAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFGDidllKASAKERRLMRgKRMAMILQDPK 100
Cdd:PRK13646 21 QAIHDVNTEFEQGKYyAIVGQTGSGKSTLIQNINALlKPTTGTVTVDDITITH----KTKDKYIRPVR-KRIGMVFQFPE 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 101 YSLNPvMTIGRQIMETLRTHeKIGSSEARQRTLAMLeaVQIRDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADE 180
Cdd:PRK13646 96 SQLFE-DTVEREIIFGPKNF-KMNLDEVKNYAHRLL--MDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDE 171
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736475199 181 PTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANL 242
Cdd:PRK13646 172 PTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
|
| ABC_NatA_sodium_exporter |
cd03266 |
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a ... |
5-236 |
1.40e-19 |
|
ATP-binding cassette domain of the Na+ transporter; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein.
Pssm-ID: 213233 [Multi-domain] Cd Length: 218 Bit Score: 84.73 E-value: 1.40e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgDIDLLKASAK 82
Cdd:cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPgEVTGLLGPNGAGKTTTLRMLAGLlEPDAGFATVD-----GFDVVKEPAE 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRlmrgkRMAmILQDpKYSLNPVMTIgrqiMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLFPHEVSGGMGQR 162
Cdd:cd03266 76 ARR-----RLG-FVSD-STGLYDRLTA----RENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQK 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQL-RALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217
|
|
| artP |
PRK11124 |
arginine transporter ATP-binding subunit; Provisional |
35-235 |
1.67e-19 |
|
arginine transporter ATP-binding subunit; Provisional
Pssm-ID: 182980 [Multi-domain] Cd Length: 242 Bit Score: 85.07 E-value: 1.67e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFgdiDLLKA-SAKERRLMRgKRMAMILQdpKYSLNPVMTIGRQ 112
Cdd:PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLeMPRSGTLNIAGNHF---DFSKTpSDKAIRELR-RNVGMVFQ--QYNLWPHLTVQQN 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 113 IMETLRTHEKIGSSEARQRTLAMLEAVQIRDperVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLE 192
Cdd:PRK11124 103 LIEAPCRVLGLSKDQALARAEKLLERLRLKP---YADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ 179
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 736475199 193 VLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK11124 180 IVSIIREL-AETGITQVIVTHEVEVARKTASRVVYMENGHIVE 221
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-244 |
1.71e-19 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 87.57 E-value: 1.71e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGlVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknARIEADTLRFGDIDLLKASAKE 83
Cdd:TIGR02633 257 ILEARNLTCWDVINPH-RKRVDDVSFSLRRgEILGVAGLVGAGRTELVQALFGAYP--GKFEGNVFINGKPVDIRNPAQA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgKRMAMILQDPK-YSLNPVMTIGRQI-METLRTHEKIGSSEARQRTLAMLEAVQiRDPERVF--DLFPHEVSGGM 159
Cdd:TIGR02633 334 IR----AGIAMVPEDRKrHGIVPILGVGKNItLSVLKSFCFKMRIDAAAELQIIGSAIQ-RLKVKTAspFLPIGRLSGGN 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELAS 239
Cdd:TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVN 487
|
....*
gi 736475199 240 ANLKE 244
Cdd:TIGR02633 488 HALTQ 492
|
|
| ABC_NatA_like |
cd03267 |
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; ... |
9-234 |
1.92e-19 |
|
ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA; NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein.
Pssm-ID: 213234 [Multi-domain] Cd Length: 236 Bit Score: 84.69 E-value: 1.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 9 ENLRVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadtlRFGDIDLLKASAKERR- 85
Cdd:cd03267 21 GSLKSLFKRKYREVEALKGISFTIEKgEIVGFIGPNGAGKTTTLKILSGlLQPTSGEV-----RVAGLVPWKRRKKFLRr 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 --LMRGKRMAMILQDPkyslnpvmtigrqIMETLRTHEKI---GSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMG 160
Cdd:cd03267 96 igVVFGQKTQLWWDLP-------------VIDSFYLLAAIydlPPARFKKRLDELSELLDL---EELLDTPVRQLSLGQR 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 161 QRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03267 160 MRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLL 233
|
|
| CydD |
TIGR02857 |
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family ... |
2-228 |
1.99e-19 |
|
thiol reductant ABC exporter, CydD subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Pssm-ID: 274323 [Multi-domain] Cd Length: 529 Bit Score: 87.73 E-value: 1.99e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 2 SASLLTVENLRVSFPTRTglvEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDIDLLKAS 80
Cdd:TIGR02857 318 PASSLEFSGVSVAYPGRR---PALRPVSFTVpPGERVALVGPSGAGKSTLLNLLLGF----VDPTEGSIAVNGVPLADAD 390
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 AKERRlmrgKRMAMILQdpkyslNPVMTIGrQIMETLRTHEKIGSSEARQRTL---AMLEAVQIRDP--ERVFDLFPHEV 155
Cdd:TIGR02857 391 ADSWR----DQIAWVPQ------HPFLFAG-TIAENIRLARPDASDAEIREALeraGLDEFVAALPQglDTPIGEGGAGL 459
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSfCDRVLVM 228
Cdd:TIGR02857 460 SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRLALAAL-ADRIVVL 529
|
|
| cbiO |
PRK13642 |
energy-coupling factor transporter ATPase; |
5-242 |
4.56e-19 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184202 [Multi-domain] Cd Length: 277 Bit Score: 84.37 E-value: 4.56e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGlVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEadtlrfgDIDLLKASAKE 83
Cdd:PRK13642 4 ILEVENLVFKYEKESD-VNQLNGVSFSITKgEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV-------KIDGELLTAEN 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRgKRMAMILQDPKYSLnpvmtIGRQIMETL---RTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMG 160
Cdd:PRK13642 76 VWNLR-RKIGMVFQNPDNQF-----VGATVEDDVafgMENQGIPREEMIKRVDEALLAVNMLDFK---TREPARLSGGQK 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 161 QRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEELASA 240
Cdd:PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS-SDRILVMKAGEIIKEAAPS 225
|
..
gi 736475199 241 NL 242
Cdd:PRK13642 226 EL 227
|
|
| MdlB |
COG1132 |
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; |
6-236 |
4.92e-19 |
|
ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms];
Pssm-ID: 440747 [Multi-domain] Cd Length: 579 Bit Score: 86.37 E-value: 4.92e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDIDLLKASAKER 84
Cdd:COG1132 340 IEFENVSFSYPGDR---PVLKDISLTIPPgETVALVGPSGSGKSTLVNLLLRF----YDPTSGRILIDGVDIRDLTLESL 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgKRMAMILQDPkYSLNpvMTIgrqiMETLRthekIGSSEA-RQRTLAMLEAVQIRDperVFDLFPH---------- 153
Cdd:COG1132 413 R----RQIGVVPQDT-FLFS--GTI----RENIR----YGRPDAtDEEVEEAAKAAQAHE---FIEALPDgydtvvgerg 474
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 -EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHdlRLvSS--FCDRVLVMYA 230
Cdd:COG1132 475 vNLSGGQRQRIAIARALLKDPPILILDEATSALDTETEALIQEALERLMKGRTT--IVIAH--RL-STirNADRILVLDD 549
|
....*.
gi 736475199 231 GKVVEE 236
Cdd:COG1132 550 GRIVEQ 555
|
|
| cbiO |
PRK13634 |
cobalt transporter ATP-binding subunit; Provisional |
39-234 |
5.85e-19 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237454 [Multi-domain] Cd Length: 290 Bit Score: 84.30 E-value: 5.85e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGL-TPKNArieadTLRFGDiDLLKASAKERRL--MRgKRMAMILQDPKYslnpvmtigrQIME 115
Cdd:PRK13634 38 IIGHTGSGKSTLLQHLNGLlQPTSG-----TVTIGE-RVITAGKKNKKLkpLR-KKVGIVFQFPEH----------QLFE 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 116 tlRTHEK--------IGSSE--ARQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSAL 185
Cdd:PRK13634 101 --ETVEKdicfgpmnFGVSEedAKQKAREMIELVGL--PEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 736475199 186 DVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK13634 177 DPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF 225
|
|
| PRK14247 |
PRK14247 |
phosphate ABC transporter ATP-binding protein; Provisional |
4-236 |
9.20e-19 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172735 [Multi-domain] Cd Length: 250 Bit Score: 83.04 E-value: 9.20e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFptrtGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRA---IMGLTPKnARIEADTLRFGDiDLLKA 79
Cdd:PRK14247 2 NKIEIRDLKVSF----GQVEVLDGVNLEIpDNTITALMGPSGSGKSTLLRVfnrLIELYPE-ARVSGEVYLDGQ-DIFKM 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRlmrgKRMAMILQDPkyslNPV--MTIGRQIMETLRTHEKIGS-SEARQRTLAMLEAVQIRDP-ERVFDLFPHEV 155
Cdd:PRK14247 76 DVIELR----RRVQMVFQIP----NPIpnLSIFENVALGLKLNRLVKSkKELQERVRWALEKAQLWDEvKDRLDAPAGKL 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrgMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK14247 148 SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKD--MTIVLVTHFPQQAARISDYVAFLYKGQIVE 225
|
.
gi 736475199 236 E 236
Cdd:PRK14247 226 W 226
|
|
| NupO |
COG3845 |
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and ... |
1-246 |
1.58e-18 |
|
ABC-type guanosine uptake system NupNOPQ, ATPase component NupO [Nucleotide transport and metabolism];
Pssm-ID: 443055 [Multi-domain] Cd Length: 504 Bit Score: 84.69 E-value: 1.58e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTrtglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEADTlrfGDIdllka 79
Cdd:COG3845 1 MMPPALELRGITKRFGG----VVANDDVSLTVRPgEIHALLGENGAGKSTLMKILYGL------YQPDS---GEI----- 62
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 sakerrLMRGKRMA-------------MILQDPKysLNPVMT------IGrqiMETLRTHeKIGSSEARQRTLAMLEAVQ 140
Cdd:COG3845 63 ------LIDGKPVRirsprdaialgigMVHQHFM--LVPNLTvaenivLG---LEPTKGG-RLDRKAARARIRELSERYG 130
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 141 IR-DPE-RVFDLfphevSGGMGQRVMIAMMLVCGPELLIADEPTSALdvTVQ--LEVLDILDKLvRDRGMGLIFVSHDLR 216
Cdd:COG3845 131 LDvDPDaKVEDL-----SVGEQQRVEILKALYRGARILILDEPTAVL--TPQeaDELFEILRRL-AAEGKSIIFITHKLR 202
|
250 260 270
....*....|....*....|....*....|
gi 736475199 217 LVSSFCDRVLVMYAGKVVEELASANLKEAK 246
Cdd:COG3845 203 EVMAIADRVTVLRRGKVVGTVDTAETSEEE 232
|
|
| potA |
PRK09452 |
spermidine/putrescine ABC transporter ATP-binding protein PotA; |
35-233 |
3.34e-18 |
|
spermidine/putrescine ABC transporter ATP-binding protein PotA;
Pssm-ID: 236523 [Multi-domain] Cd Length: 375 Bit Score: 83.07 E-value: 3.34e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgDIDLLKASAKERRLmrgkrmAMILQDpkYSLNPVMTIGRQI 113
Cdd:PRK09452 41 EFLTLLGPSGCGKTTVLRLIAGFeTPDSGRIMLD-----GQDITHVPAENRHV------NTVFQS--YALFPHMTVFENV 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 114 METLRThEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALD----VTV 189
Cdd:PRK09452 108 AFGLRM-QKTPAAEITPRVMEALRMVQL---EEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDyklrKQM 183
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 736475199 190 QLEvldiLDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK09452 184 QNE----LKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRI 223
|
|
| cbiO |
PRK13632 |
cobalt transporter ATP-binding subunit; Provisional |
8-234 |
3.57e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237452 [Multi-domain] Cd Length: 271 Bit Score: 81.96 E-value: 3.57e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFPTRTGLveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgDIDLLKASAKERR 85
Cdd:PRK13632 10 VENVSFSYPNSENN--ALKNVSFEINEgEYVAILGHNGSGKSTISKILTGLlKPQSGEIKID-----GITISKENLKEIR 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 lmrgKRMAMILQDPKyslNPVM--TIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRV 163
Cdd:PRK13632 83 ----KKIGIIFQNPD---NQFIgaTVEDDIAFGLE-NKKVPPKKMKDIIDDLAKKVGM---EDYLDKEPQNLSGGQKQRV 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVV 234
Cdd:PRK13632 152 AIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAIL-ADKVIVFSEGKLI 221
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
6-246 |
4.19e-18 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 83.44 E-value: 4.19e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGlVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknARIEADTLRFGDIDLLKASAKER 84
Cdd:PRK13549 260 LEVRNLTAWDPVNPH-IKRVDDVSFSLRRgEILGIAGLVGAGRTELVQCLFGAYP--GRWEGEIFIDGKPVKIRNPQQAI 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLmrgkRMAMILQDPK-YSLNPVMTIGRQI-METLRTHEKIGS--SEARQRTL--AMLE-AVQIRDPE-RVFDLfphevS 156
Cdd:PRK13549 337 AQ----GIAMVPEDRKrDGIVPVMGVGKNItLAALDRFTGGSRidDAAELKTIleSIQRlKVKTASPElAIARL-----S 407
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:PRK13549 408 GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486
|
250
....*....|
gi 736475199 237 LASANLKEAK 246
Cdd:PRK13549 487 LINHNLTQEQ 496
|
|
| cbiO |
PRK13639 |
cobalt transporter ATP-binding subunit; Provisional |
5-236 |
4.62e-18 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184199 [Multi-domain] Cd Length: 275 Bit Score: 81.66 E-value: 4.62e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIEAD--TLRFGDIDLLKAS 80
Cdd:PRK13639 1 ILETRDLKYSYPDGT---EALKGINFKAEKgEMVALLGPNGAGKSTLFLHFNGiLKPTSGEVLIKgePIKYDKKSLLEVR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 akerrlmrgKRMAMILQDPKYSL-NPVMtigRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFdlfPHEVSGGM 159
Cdd:PRK13639 78 ---------KTVGIVFQNPDDQLfAPTV---EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKP---PHHLSGGQ 142
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:PRK13639 143 KKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKE 218
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
25-246 |
5.78e-18 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 83.30 E-value: 5.78e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 25 VRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGltpknarieADTLRFGDIDLLKASAKERRLMRG--KRMAMILQD--- 98
Cdd:PRK09700 279 VRDISFSVCRgEILGFAGLVGSGRTELMNCLFG---------VDKRAGGEIRLNGKDISPRSPLDAvkKGMAYITESrrd 349
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 99 ----PKYSLNPVMTIGRQI--------METLRTHEKIGSSEArQRTLAMLEAVQIrdpervfDLFPHEVSGGMGQRVMIA 166
Cdd:PRK09700 350 ngffPNFSIAQNMAISRSLkdggykgaMGLFHEVDEQRTAEN-QRELLALKCHSV-------NQNITELSGGNQQKVLIS 421
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 167 MMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVrDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEEL-ASANLKEA 245
Cdd:PRK09700 422 KWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA-DDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILtNRDDMSEE 500
|
.
gi 736475199 246 K 246
Cdd:PRK09700 501 E 501
|
|
| PRK13633 |
PRK13633 |
energy-coupling factor transporter ATPase; |
24-236 |
8.35e-18 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237453 [Multi-domain] Cd Length: 280 Bit Score: 80.90 E-value: 8.35e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLrfgDIDLLKASAKERrlmrgKRMAMILQDPKY 101
Cdd:PRK13633 25 ALDDVNLEVKKgEFLVILGRNGSGKSTIAKHMNALlIPSEGKVYVDGL---DTSDEENLWDIR-----NKAGMVFQNPDN 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 102 SLnpVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERvfdLFPHEVSGGMGQRVMIAMMLVCGPELLIADEP 181
Cdd:PRK13633 97 QI--VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRR---HAPHLLSGGQKQRVAIAGILAMRPECIIFDEP 171
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 182 TSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEE 236
Cdd:PRK13633 172 TAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVME 225
|
|
| PRK13651 |
PRK13651 |
cobalt transporter ATP-binding subunit; Provisional |
24-234 |
1.00e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184210 [Multi-domain] Cd Length: 305 Bit Score: 81.29 E-value: 1.00e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKS------------QTGRAIMGLTPKNARIEADTLRFGDIDLLKASAKERRLMRGK 90
Cdd:PRK13651 22 ALDNVSVEINQgEFIAIIGQTGSGKTtfiehlnalllpDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIK 101
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 91 ----RMAMILQDPKYSLNPvMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQRVMIA 166
Cdd:PRK13651 102 eirrRVGVVFQFAEYQLFE-QTIEKDIIFGPVSM-GVSKEEAKKRAAKYIELVGL--DESYLQRSPFELSGGQKRRVALA 177
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 167 MMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK13651 178 GILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL-NKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII 244
|
|
| cbiO |
PRK13652 |
cobalt transporter ATP-binding subunit; Provisional |
17-236 |
1.24e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 172200 [Multi-domain] Cd Length: 277 Bit Score: 80.62 E-value: 1.24e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 17 TRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadtLRFGDiDLLKASAKERRlmrgKRMAM 94
Cdd:PRK13652 12 SYSGSKEALNNINFIAPRnSRIAVIGPNGAGKSTLFRHFNGiLKPTSGSV----LIRGE-PITKENIREVR----KFVGL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 95 ILQDPKyslnpvmtigRQIMETLRTHE------KIGSSEArqrTLA--MLEAVQIRDPERVFDLFPHEVSGGMGQRVMIA 166
Cdd:PRK13652 83 VFQNPD----------DQIFSPTVEQDiafgpiNLGLDEE---TVAhrVSSALHMLGLEELRDRVPHHLSGGEKKRVAIA 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 167 MMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:PRK13652 150 GVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219
|
|
| cbiO |
PRK13636 |
cobalt transporter ATP-binding subunit; Provisional |
1-273 |
1.95e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184196 [Multi-domain] Cd Length: 283 Bit Score: 79.89 E-value: 1.95e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIeadtlrFGDIDLLK 78
Cdd:PRK13636 1 MEDYILKVEELNYNYSDGT---HALKGININIKKgEVTAILGGNGAGKSTLFQNLNGiLKPSSGRI------LFDGKPID 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERRLMRgKRMAMILQDPKYSLNPVMTIgrQIMETLRTHEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGG 158
Cdd:PRK13636 72 YSRKGLMKLR-ESVGMVFQDPDNQLFSASVY--QDVSFGAVNLKLPEDEVRKRVDNALKRTGI---EHLKDKPTHCLSFG 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEEla 238
Cdd:PRK13636 146 QKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ-- 223
|
250 260 270
....*....|....*....|....*....|....*..
gi 736475199 239 sANLKE--AKHPYTQGLLNCLPQIGghrHPLPVLERK 273
Cdd:PRK13636 224 -GNPKEvfAEKEMLRKVNLRLPRIG---HLMEILKEK 256
|
|
| PRK14271 |
PRK14271 |
phosphate ABC transporter ATP-binding protein; Provisional |
2-250 |
3.22e-17 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172759 [Multi-domain] Cd Length: 276 Bit Score: 79.37 E-value: 3.22e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 2 SASLLTVENLRVSFPTRTGLVEAVRGVSftlGRERLGIVGESGSGKSQTGRAIMGLTPKNA--RIEADTLRFGDIDLLKA 79
Cdd:PRK14271 18 AAPAMAAVNLTLGFAGKTVLDQVSMGFP---ARAVTSLMGPTGSGKTTFLRTLNRMNDKVSgyRYSGDVLLGGRSIFNYR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRlmrgKRMAMILQDPkyslNPV-MTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDP--ERVFDlFPHEVS 156
Cdd:PRK14271 95 DVLEFR----RRVGMLFQRP----NPFpMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAvkDRLSD-SPFRLS 165
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVrDRgMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:PRK14271 166 GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA-DR-LTVIIVTHNLAQAARISDRAALFFDGRLVEE 243
|
250
....*....|....*
gi 736475199 237 LASANL-KEAKHPYT 250
Cdd:PRK14271 244 GPTEQLfSSPKHAET 258
|
|
| cbiO |
PRK13647 |
cobalt transporter ATP-binding subunit; Provisional |
3-271 |
3.98e-17 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 237457 [Multi-domain] Cd Length: 274 Bit Score: 79.01 E-value: 3.98e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKAS 80
Cdd:PRK13647 2 DNIIEVEDLHFRYKDGT---KALKGLSLSIPEgSKTALLGPNGAGKSTLLLHLNGIyLPQRGRV-----KVMGREVNAEN 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 AKERRlmrgKRMAMILQDPKYSLNPvMTI------GRQIMEtlrthekIGSSEARQRTLAMLEAVQIRDperVFDLFPHE 154
Cdd:PRK13647 74 EKWVR----SKVGLVFQDPDDQVFS-STVwddvafGPVNMG-------LDKDEVERRVEEALKAVRMWD---FRDKPPYH 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK13647 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDVDLAAEWADQVIVLKEGRVL 217
|
250 260 270 280
....*....|....*....|....*....|....*....|....*
gi 736475199 235 EE-----LASANLKEA---KHPYTQGLLNCLPQIGGHRHPLPVLE 271
Cdd:PRK13647 218 AEgdkslLTDEDIVEQaglRLPLVAQIFEDLPELGQSKLPLTVKE 262
|
|
| cbiO |
PRK13644 |
energy-coupling factor transporter ATPase; |
5-236 |
5.67e-17 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 106587 [Multi-domain] Cd Length: 274 Bit Score: 78.49 E-value: 5.67e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFGDIDLLKAsak 82
Cdd:PRK13644 1 MIRLENVSYSYPDGT---PALENINLVIKKgEYIGIIGKNGSGKSTLALHLNGLlRPQKGKVLVSGIDTGDFSKLQG--- 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 errlMRgKRMAMILQDPKYSLnpvmtIGRQIMETLRTHEK---IGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGM 159
Cdd:PRK13644 75 ----IR-KLVGIVFQNPETQF-----VGRTVEEDLAFGPEnlcLPPIEIRKRVDRALAEIGL---EKYRHRSPKTLSGGQ 141
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEE 236
Cdd:PRK13644 142 GQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKL-HEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLE 216
|
|
| ABCC_ATM1_transporter |
cd03253 |
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC ... |
6-236 |
6.13e-17 |
|
ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C; ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213220 [Multi-domain] Cd Length: 236 Bit Score: 77.66 E-value: 6.13e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRtglVEAVRGVSFTL-GRERLGIVGESGSGKSqtgrAIMGLTPKNARIEADTLRFGDIDLLKASAKER 84
Cdd:cd03253 1 IEFENVTFAYDPG---RPVLKDVSFTIpAGKKVAIVGPSGSGKS----TILRLLFRFYDVSSGSILIDGQDIREVTLDSL 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgKRMAMILQDP-----------KYSlNPVMTiGRQIMETLRT---HEKIgssearqrtLAMLEAVQIRDPERVFDL 150
Cdd:cd03253 74 R----RAIGVVPQDTvlfndtigyniRYG-RPDAT-DEEVIEAAKAaqiHDKI---------MRFPDGYDTIVGERGLKL 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 fphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSfCDRVLVMYA 230
Cdd:cd03253 139 -----SGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGR--TTIVIAHRLSTIVN-ADKIIVLKD 210
|
....*.
gi 736475199 231 GKVVEE 236
Cdd:cd03253 211 GRIVER 216
|
|
| ABC_KpsT_Wzt |
cd03220 |
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC ... |
6-236 |
8.51e-17 |
|
ATP-binding cassette component of polysaccharide transport system; The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2.
Pssm-ID: 213187 [Multi-domain] Cd Length: 224 Bit Score: 77.19 E-value: 8.51e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGL------------------VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNAriea 66
Cdd:cd03220 1 IELENVSKSYPTYKGGssslkklgilgrkgevgeFWALKDVSFEVPRgERIGLIGRNGAGKSTLLRLLAGIYPPDS---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 67 dtlrfGDIDllkasakerrlMRGKRMAMIlqDPKYSLNPVMTiGRQ---IMETLRTHEKigsSEARQRtlaMLEAVQIRD 143
Cdd:cd03220 77 -----GTVT-----------VRGRVSSLL--GLGGGFNPELT-GREniyLNGRLLGLSR---KEIDEK---IDEIIEFSE 131
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 144 PERVFDLFPHEVSGGMGQRVM--IAMMLvcGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSF 221
Cdd:cd03220 132 LGDFIDLPVKTYSSGMKARLAfaIATAL--EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ-GKTVILVSHDPSSIKRL 208
|
250
....*....|....*
gi 736475199 222 CDRVLVMYAGKVVEE 236
Cdd:cd03220 209 CDRALVLEKGKIRFD 223
|
|
| fecE |
PRK11231 |
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE; |
6-269 |
9.46e-17 |
|
Fe(3+) dicitrate ABC transporter ATP-binding protein FecE;
Pssm-ID: 183044 [Multi-domain] Cd Length: 255 Bit Score: 77.75 E-value: 9.46e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMG-LTPKNArieadTLRFGDIDLLKASAKE 83
Cdd:PRK11231 3 LRTENLTVGYGTKR----ILNDLSLSLPTGKItALIGPNGCGKSTLLKCFARlLTPQSG-----TVFLGDKPISMLSSRQ 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RrlmrGKRMAMIlqdPKYSLNPVMTIGRQIMETLR----THEKIGSSEARQRTLAMLEAVQIRD--PERVFDLfphevSG 157
Cdd:PRK11231 74 L----ARRLALL---PQHHLTPEGITVRELVAYGRspwlSLWGRLSAEDNARVNQAMEQTRINHlaDRRLTDL-----SG 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 158 GMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEEL 237
Cdd:PRK11231 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220
|
250 260 270
....*....|....*....|....*....|..
gi 736475199 238 ASANLkeakhpYTQGLLNCLPQIGGHRHPLPV 269
Cdd:PRK11231 221 TPEEV------MTPGLLRTVFDVEAEIHPEPV 246
|
|
| ABCC_bacteriocin_exporters |
cd03245 |
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic ... |
6-234 |
1.19e-16 |
|
ATP-binding cassette domain of bacteriocin exporters, subfamily C; Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Pssm-ID: 213212 [Multi-domain] Cd Length: 220 Bit Score: 76.47 E-value: 1.19e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIeadtlRFGDIDLLKASAKE 83
Cdd:cd03245 3 IEFRNVSFSYPNQE--IPALDNVSLTIRAgEKVAIIGRVGSGKSTLLKLLAGLyKPTSGSV-----LLDGTDIRQLDPAD 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgKRMAMILQDP---KYSLNPVMTIGRQIMET---LRTHEKIGSSEARQRTLAMLEaVQIRdpERVFDLfphevSG 157
Cdd:cd03245 76 LR----RNIGYVPQDVtlfYGTLRDNITLGAPLADDeriLRAAELAGVTDFVNKHPNGLD-LQIG--ERGRGL-----SG 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 158 GMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVsSFCDRVLVMYAGKVV 234
Cdd:cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDK--TLIIITHRPSLL-DLVDRIIVMDSGRIV 217
|
|
| fbpC |
PRK11432 |
ferric ABC transporter ATP-binding protein; |
39-268 |
1.68e-16 |
|
ferric ABC transporter ATP-binding protein;
Pssm-ID: 183133 [Multi-domain] Cd Length: 351 Bit Score: 78.22 E-value: 1.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfGDiDLLKASAKERRLmrgkrmAMILQdpKYSLNPVMTIGRQIMETL 117
Cdd:PRK11432 37 LLGPSGCGKTTVLRLVAGLeKPTEGQIFID----GE-DVTHRSIQQRDI------CMVFQ--SYALFPHMSLGENVGYGL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 118 RThEKIGSSEARQRtlaMLEAVQIRDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDIL 197
Cdd:PRK11432 104 KM-LGVPKEERKQR---VKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 198 DKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE--------------LAS----ANLKEAKhpYTQGLLNclpq 259
Cdd:PRK11432 180 RELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIgspqelyrqpasrfMASfmgdANIFPAT--LSGDYVD---- 253
|
....*....
gi 736475199 260 IGGHRHPLP 268
Cdd:PRK11432 254 IYGYRLPRP 262
|
|
| cbiO |
PRK13650 |
energy-coupling factor transporter ATPase; |
25-261 |
2.03e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184209 [Multi-domain] Cd Length: 279 Bit Score: 77.08 E-value: 2.03e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 25 VRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEADTlrfGDI----DLLKA-SAKERRlmrgKRMAMILQD 98
Cdd:PRK13650 23 LNDVSFHVKQgEWLSIIGHNGSGKSTTVRLIDGL------LEAES---GQIiidgDLLTEeNVWDIR----HKIGMVFQN 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 99 PKYSLnpvmtIGRQIMETLR---THEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMIAMMLVCGPEL 175
Cdd:PRK13650 90 PDNQF-----VGATVEDDVAfglENKGIPHEEMKERVNEALELVGMQDFK---EREPARLSGGQKQRVAIAGAVAMRPKI 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 176 LIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVsSFCDRVLVMYAGKV------------VEELASANLK 243
Cdd:PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVeststprelfsrGNDLLQLGLD 240
|
250
....*....|....*...
gi 736475199 244 EakhPYTQGLLNCLPQIG 261
Cdd:PRK13650 241 I---PFTTSLVQSLRQNG 255
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
5-235 |
3.10e-16 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 78.18 E-value: 3.10e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIE-ADTLRFGDIDllkasa 81
Cdd:COG0488 315 VLELEGLSKSYGDKT----LLDDLSLRIDRgDRIGLIGPNGAGKSTLLKLLAGeLEPDSGTVKlGETVKIGYFD------ 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 kerrlmrgkrmamilQDPKYsLNPVMTIgrqiMETLRThekiGSSEARQRTL-AMLEAVQIRdPERVF----DLfphevS 156
Cdd:COG0488 385 ---------------QHQEE-LDPDKTV----LDELRD----GAPGGTEQEVrGYLGRFLFS-GDDAFkpvgVL-----S 434
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALDvtvqLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:COG0488 435 GGEKARLALAKLLLSPPNVLLLDEPTNHLD----IETLEALEEALDDFPGTVLLVSHDRYFLDRVATRILEFEDGGVRE 509
|
|
| PRK10584 |
PRK10584 |
putative ABC transporter ATP-binding protein YbbA; Provisional |
35-236 |
3.72e-16 |
|
putative ABC transporter ATP-binding protein YbbA; Provisional
Pssm-ID: 182569 [Multi-domain] Cd Length: 228 Bit Score: 75.59 E-value: 3.72e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLL-----KASAKERRLMRGKRMAMILQdpKYSLNPVMTI 109
Cdd:PRK10584 37 ETIALIGESGSGKSTLLAILAGLDDGSS---------GEVSLVgqplhQMDEEARAKLRAKHVGFVFQ--SFMLIPTLNA 105
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 110 --GRQIMETLRTHEkigSSEARQRTLAMLEavQIRDPERVFDLfPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDV 187
Cdd:PRK10584 106 leNVELPALLRGES---SRQSRNGAKALLE--QLGLGKRLDHL-PAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDR 179
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 736475199 188 TVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEE 236
Cdd:PRK10584 180 QTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQEE 227
|
|
| PRK10895 |
PRK10895 |
lipopolysaccharide ABC transporter ATP-binding protein; Provisional |
4-234 |
4.48e-16 |
|
lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Pssm-ID: 182817 [Multi-domain] Cd Length: 241 Bit Score: 75.70 E-value: 4.48e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA-RIEADTlrfGDIDLLKASA 81
Cdd:PRK10895 2 ATLTAKNLAKAYKGRR----VVEDVSLTVNSgEIVGLLGPNGAGKTTTFYMVVGIVPRDAgNIIIDD---EDISLLPLHA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRlmrgkRMAMILQDPkySLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQ 161
Cdd:PRK10895 75 RARR-----GIGYLPQEA--SIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHI---EHLRDSMGQSLSGGERR 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK10895 145 RVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHL-RDSGLGVLITDHNVRETLAVCERAYIVSQGHLI 216
|
|
| cbiO |
PRK13645 |
energy-coupling factor transporter ATPase; |
6-235 |
5.53e-16 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184204 [Multi-domain] Cd Length: 289 Bit Score: 76.20 E-value: 5.53e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGL-VEAVRGVSFTLGRERLG-IVGESGSGKS------------QTGRAIMGltpkNARIEADTLRF 71
Cdd:PRK13645 7 IILDNVSYTYAKKTPFeFKALNNTSLTFKKNKVTcVIGTTGSGKStmiqltngliisETGQTIVG----DYAIPANLKKI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 72 GDIDLLKasakerrlmrgKRMAMILQDPKYSLnpvmtigrqIMETLRTHEKIG-------SSEARQRTLAMLEAVQIrdP 144
Cdd:PRK13645 83 KEVKRLR-----------KEIGLVFQFPEYQL---------FQETIEKDIAFGpvnlgenKQEAYKKVPELLKLVQL--P 140
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 145 ERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDR 224
Cdd:PRK13645 141 EDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADE 220
|
250
....*....|.
gi 736475199 225 VLVMYAGKVVE 235
Cdd:PRK13645 221 VIVMHEGKVIS 231
|
|
| ABC_YhbG |
cd03218 |
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the ... |
6-236 |
8.73e-16 |
|
ATP-binding cassette component of YhbG transport system; The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Pssm-ID: 213185 [Multi-domain] Cd Length: 232 Bit Score: 74.50 E-value: 8.73e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA-RIEadtlrFGDIDLLKASAKE 83
Cdd:cd03218 1 LRAENLSKRYGKRK----VVNGVSLSVKQgEIVGLLGPNGAGKTTTFYMIVGLVKPDSgKIL-----LDGQDITKLPMHK 71
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgkRMAMIL--QDPkySLNPVMTIGRQIMETLRTHEKiGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQ 161
Cdd:cd03218 72 RA-----RLGIGYlpQEA--SIFRKLTVEENILAVLEIRGL-SKKEREEKLEELLEEFHI---THLRKSKASSLSGGERR 140
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKIL-KDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAE 214
|
|
| PRK14239 |
PRK14239 |
phosphate transporter ATP-binding protein; Provisional |
1-235 |
9.71e-16 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184585 [Multi-domain] Cd Length: 252 Bit Score: 74.81 E-value: 9.71e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRtglvEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAI--MG-LTPKNARIEADTLRFGDIDL 76
Cdd:PRK14239 1 MTEPILQVSDLSVYYNKK----KALNSVSLDFyPNEITALIGPSGSGKSTLLRSInrMNdLNPEVTITGSIVYNGHNIYS 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 77 LKASAKERRlmrgKRMAMILQDPkyslNPV-MTIGRQIMETLR---THEKIGSSEARQRTL---AMLEAVQIRDPERVFD 149
Cdd:PRK14239 77 PRTDTVDLR----KEIGMVFQQP----NPFpMSIYENVVYGLRlkgIKDKQVLDEAVEKSLkgaSIWDEVKDRLHDSALG 148
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 150 LfphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSFCDRVLVMY 229
Cdd:PRK14239 149 L-----SGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTM--LLVTRSMQQASRISDRTGFFL 221
|
....*.
gi 736475199 230 AGKVVE 235
Cdd:PRK14239 222 DGDLIE 227
|
|
| ABCC_NFT1 |
cd03369 |
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type ... |
6-235 |
1.20e-15 |
|
ATP-binding cassette domain 2 of NFT1, subfamily C; Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213269 [Multi-domain] Cd Length: 207 Bit Score: 73.60 E-value: 1.20e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptRTGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMG-LTPKNARIEADTLRFGDIDLlkasake 83
Cdd:cd03369 7 IEVENLSVRY--APDLPPVLKNVSFKVkAGEKIGIVGRTGAGKSTLILALFRfLEAEEGKIEIDGIDISTIPL------- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRgkRMAMILQDP-------KYSLNPV-MTIGRQIMETLRTHEKiGSSearqrtlamleavqirdpervfdlfpheV 155
Cdd:cd03369 78 EDLRS--SLTIIPQDPtlfsgtiRSNLDPFdEYSDEEIYGALRVSEG-GLN----------------------------L 126
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSfCDRVLVMYAGKVVE 235
Cdd:cd03369 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTI--LTIAHRLRTIID-YDKILVMDAGEVKE 203
|
|
| TagH |
COG1134 |
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate ... |
1-236 |
1.73e-15 |
|
ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism];
Pssm-ID: 440749 [Multi-domain] Cd Length: 245 Bit Score: 73.96 E-value: 1.73e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSaSLLTVENLRVSFP------------------TRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPK 60
Cdd:COG1134 1 MS-SMIEVENVSKSYRlyhepsrslkelllrrrrTRREEFWALKDVSFEVERgESVGIIGRNGAGKSTLLKLIAGiLEPT 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 61 NARIEadtlrfgdidllkasakerrlMRGkRMAMILqDPKYSLNPVMTiGRQ-ImetlrthekigssearqRTLAMLEAV 139
Cdd:COG1134 80 SGRVE---------------------VNG-RVSALL-ELGAGFHPELT-GREnI-----------------YLNGRLLGL 118
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 140 QIRDPERVFDlfphEV-----------------SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvR 202
Cdd:COG1134 119 SRKEIDEKFD----EIvefaelgdfidqpvktySSGMRARLAFAVATAVDPDILLVDEVLAVGDAAFQKKCLARIREL-R 193
|
250 260 270
....*....|....*....|....*....|....
gi 736475199 203 DRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:COG1134 194 ESGRTVIFVSHSMGAVRRLCDRAIWLEKGRLVMD 227
|
|
| znuC |
PRK09544 |
high-affinity zinc transporter ATPase; Reviewed |
4-226 |
1.83e-15 |
|
high-affinity zinc transporter ATPase; Reviewed
Pssm-ID: 181939 [Multi-domain] Cd Length: 251 Bit Score: 73.99 E-value: 1.83e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTGLVEavrgVSFTLGRER-LGIVGESGSGKSQTGRAIMGLT-PKNARIEADtlrfgdidllkasa 81
Cdd:PRK09544 3 SLVSLENVSVSFGQRRVLSD----VSLELKPGKiLTLLGPNGAGKSTLVRVVLGLVaPDEGVIKRN-------------- 64
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 kerrlmRGKRMAMILQdpKYSLNPVM--TIGRQIMetLRTHEKigsseaRQRTLAMLEAVQirdPERVFDLFPHEVSGGM 159
Cdd:PRK09544 65 ------GKLRIGYVPQ--KLYLDTTLplTVNRFLR--LRPGTK------KEDILPALKRVQ---AGHLIDAPMQKLSGGE 125
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVL 226
Cdd:PRK09544 126 TQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVL 192
|
|
| YnjD |
COG4136 |
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function ... |
6-214 |
1.93e-15 |
|
ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only];
Pssm-ID: 443311 [Multi-domain] Cd Length: 211 Bit Score: 73.28 E-value: 1.93e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVsfptRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEADtLRFGDIDLLKASAKER 84
Cdd:COG4136 2 LSLENLTI----TLGGRPLLAPLSLTVAPgEILTLMGPSGSGKSTLLAAIAGTLSPAFSASGE-VLLNGRRLTALPAEQR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLmrgkrmAMILQDPKysLNPVMTIGRQIMETLRthEKIGSSEARQRTLAMLEAVQIRDperVFDLFPHEVSGGMGQRVM 164
Cdd:COG4136 77 RI------GILFQDDL--LFPHLSVGENLAFALP--PTIGRAQRRARVEQALEEAGLAG---FADRDPATLSGGQRARVA 143
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHD 214
Cdd:COG4136 144 LLRALLAEPRALLLDEPFSKLDAALRAQFREFVFEQIRQRGIPALLVTHD 193
|
|
| ABC_MTABC3_MDL1_MDL2 |
cd03249 |
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 ... |
7-236 |
1.95e-15 |
|
ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins; MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Pssm-ID: 213216 [Multi-domain] Cd Length: 238 Bit Score: 73.73 E-value: 1.95e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 7 TVENLRVSFPTRTGlVEAVRGVSFTL-GRERLGIVGESGSGKSqtgrAIMGL-----TPKNARIEADTLRFGDIDLlkas 80
Cdd:cd03249 2 EFKNVSFRYPSRPD-VPILKGLSLTIpPGKTVALVGSSGCGKS----TVVSLlerfyDPTSGEILLDGVDIRDLNL---- 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 akerRLMRGKrMAMILQDP-----------KYSLNPVMTigRQIMETLR---THEKIGSSEARQRTLAmleavqirdPER 146
Cdd:cd03249 73 ----RWLRSQ-IGLVSQEPvlfdgtiaeniRYGKPDATD--EEVEEAAKkanIHDFIMSLPDGYDTLV---------GER 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 147 VFDLfphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSfCDRVL 226
Cdd:cd03249 137 GSQL-----SGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTT--IVIAHRLSTIRN-ADLIA 208
|
250
....*....|
gi 736475199 227 VMYAGKVVEE 236
Cdd:cd03249 209 VLQNGQVVEQ 218
|
|
| Uup |
COG0488 |
ATPase components of ABC transporters with duplicated ATPase domains [General function ... |
8-233 |
2.32e-15 |
|
ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only];
Pssm-ID: 440254 [Multi-domain] Cd Length: 520 Bit Score: 75.49 E-value: 2.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFPTRTgLVEavrGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEADTlrfGDIdllkasakerRL 86
Cdd:COG0488 1 LENLSKSFGGRP-LLD---DVSLSINPgDRIGLVGRNGAGKSTLLKILAGE------LEPDS---GEV----------SI 57
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 87 MRGKRMAMILQDPkySLNPVMTIGRQIMETlrtHEKIGSSEARQRTLAMLEAVQIRDPERVFDL---------------- 150
Cdd:COG0488 58 PKGLRIGYLPQEP--PLDDDLTVLDTVLDG---DAELRALEAELEELEAKLAEPDEDLERLAELqeefealggweaeara 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 --------FPH--------EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDV-TVQ-LEvldildKLVRDRGMGLIFVS 212
Cdd:COG0488 133 eeilsglgFPEedldrpvsELSGGWRRRVALARALLSEPDLLLLDEPTNHLDLeSIEwLE------EFLKNYPGTVLVVS 206
|
250 260
....*....|....*....|.
gi 736475199 213 HDLRLVSSFCDRVLVMYAGKV 233
Cdd:COG0488 207 HDRYFLDRVATRILELDRGKL 227
|
|
| ABCC_MRP_domain2 |
cd03244 |
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C ... |
8-235 |
2.89e-15 |
|
ATP-binding cassette domain 2 of multidrug resistance-associated protein; The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Pssm-ID: 213211 [Multi-domain] Cd Length: 221 Bit Score: 72.91 E-value: 2.89e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFptRTGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKERRl 86
Cdd:cd03244 5 FKNVSLRY--RPNLPPVLKNISFSIkPGEKVGIVGRTGSGKSSLLLALFRLVE----LSSGSILIDGVDISKIGLHDLR- 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 87 mrgKRMAMILQDPkyslnpvmtigrQIME-TLRTH---EKIGSSEARQRTlamLEAVQIRdpERVFDLFP---HEVSGG- 158
Cdd:cd03244 78 ---SRISIIPQDP------------VLFSgTIRSNldpFGEYSDEELWQA---LERVGLK--EFVESLPGgldTVVEEGg 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 159 ----MGQR--VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSfCDRVLVMYAGK 232
Cdd:cd03244 138 enlsVGQRqlLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTV--LTIAHRLDTIID-SDRILVLDKGR 214
|
...
gi 736475199 233 VVE 235
Cdd:cd03244 215 VVE 217
|
|
| COG4586 |
COG4586 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
7-234 |
3.33e-15 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 443643 [Multi-domain] Cd Length: 323 Bit Score: 73.97 E-value: 3.33e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 7 TVENLRVSFPTRT---GL--------------VEAVRGVSFTLGR-ERLGIVGESGSGKSQT------------GRA-IM 55
Cdd:COG4586 3 EVENLSKTYRVYEkepGLkgalkglfrreyreVEAVDDISFTIEPgEIVGFIGPNGAGKSTTikmltgilvptsGEVrVL 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 56 GLTPknarieadtlrfgdidllkaSAKERRLMRgkrmamilqdpKYSLnpVMtiG-RQ-------IMETLRTHEKI-GSS 126
Cdd:COG4586 83 GYVP--------------------FKRRKEFAR-----------RIGV--VF--GqRSqlwwdlpAIDSFRLLKAIyRIP 127
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 127 EAR-QRTLAML-EAVQIRD----PERVFDLfphevsggmGQRvM---IAMMLVCGPELLIADEPTSALDVTVQLEVLDIL 197
Cdd:COG4586 128 DAEyKKRLDELvELLDLGElldtPVRQLSL---------GQR-MrceLAAALLHRPKILFLDEPTIGLDVVSKEAIREFL 197
|
250 260 270
....*....|....*....|....*....|....*..
gi 736475199 198 DKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:COG4586 198 KEYNRERGTTILLTSHDMDDIEALCDRVIVIDHGRII 234
|
|
| PRK11831 |
PRK11831 |
phospholipid ABC transporter ATP-binding protein MlaF; |
17-248 |
3.53e-15 |
|
phospholipid ABC transporter ATP-binding protein MlaF;
Pssm-ID: 236997 [Multi-domain] Cd Length: 269 Bit Score: 73.65 E-value: 3.53e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 17 TRTGLVEaVRGVSFTLGRERL--------------GIVGESGSGKSQTGRAIMG-LTPKNARIeadtlrFGDIDLLKASA 81
Cdd:PRK11831 3 SVANLVD-MRGVSFTRGNRCIfdnisltvprgkitAIMGPSGIGKTTLLRLIGGqIAPDHGEI------LFDGENIPAMS 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRLMRGKRMAMILQDPkySLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQ 161
Cdd:PRK11831 76 RSRLYTVRKRMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAA---KLMPSELSGGMAR 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASAN 241
Cdd:PRK11831 151 RAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQA 230
|
....*..
gi 736475199 242 LKEAKHP 248
Cdd:PRK11831 231 LQANPDP 237
|
|
| thiQ |
PRK10771 |
thiamine ABC transporter ATP-binding protein ThiQ; |
35-245 |
5.49e-15 |
|
thiamine ABC transporter ATP-binding protein ThiQ;
Pssm-ID: 182716 [Multi-domain] Cd Length: 232 Bit Score: 72.31 E-value: 5.49e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMG-LTPKNArieadTLRFGDIDLLKASAKERRLmrgkrmAMILQDpkYSLNPVMTIGRQI 113
Cdd:PRK10771 26 ERVAILGPSGAGKSTLLNLIAGfLTPASG-----SLTLNGQDHTTTPPSRRPV------SMLFQE--NNLFSHLTVAQNI 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 114 meTLRTHEKIGSSEARQRTL-AMLEAVQIRDperVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLE 192
Cdd:PRK10771 93 --GLGLNPGLKLNAAQREKLhAIARQMGIED---LLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQE 167
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 193 VLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV-----EELASANLKEA 245
Cdd:PRK10771 168 MLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAwdgptDELLSGKASAS 225
|
|
| cbiO |
PRK13649 |
energy-coupling factor transporter ATPase; |
40-234 |
5.63e-15 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184208 [Multi-domain] Cd Length: 280 Bit Score: 73.24 E-value: 5.63e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 40 VGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgDIDLLKASA-KERRLMRgKRMAMILQDPKYSLnpvmtigrqIMETL 117
Cdd:PRK13649 39 IGHTGSGKSTIMQLLNGLhVPTQGSVRVD-----DTLITSTSKnKDIKQIR-KKVGLVFQFPESQL---------FEETV 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 118 RTHEKIG-------SSEARQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQ 190
Cdd:PRK13649 104 LKDVAFGpqnfgvsQEEAEALAREKLALVGI--SESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR 181
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 736475199 191 LEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK13649 182 KELMTLFKKLHQS-GMTIVLVTHLMDDVANYADFVYVLEKGKLV 224
|
|
| ABCC_Hemolysin |
cd03252 |
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a ... |
12-241 |
5.64e-15 |
|
ATP-binding cassette domain of hemolysin B, subfamily C; The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Pssm-ID: 213219 [Multi-domain] Cd Length: 237 Bit Score: 72.52 E-value: 5.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 12 RVSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFGDIDllkaSAKERRlmrg 89
Cdd:cd03252 5 HVRFRYKPDGPVILDNISLRIKPgEVVGIVGRSGSGKSTLTKLIQRFyVPENGRVLVDGHDLALAD----PAWLRR---- 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 90 kRMAMILQDP---KYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLfphevSGGMGQRVMIA 166
Cdd:cd03252 77 -QVGVVLQENvlfNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL-----SGGQRQRIAIA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 167 MMLVCGPELLIADEPTSALDV----TVQLEVLDILDklvrdrGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVE-----EL 237
Cdd:cd03252 151 RALIHNPRILIFDEATSALDYesehAIMRNMHDICA------GRTVIIIAHRLSTVKN-ADRIIVMEKGRIVEqgshdEL 223
|
....
gi 736475199 238 ASAN 241
Cdd:cd03252 224 LAEN 227
|
|
| 3a01204 |
TIGR00955 |
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, ... |
35-234 |
5.96e-15 |
|
The Eye Pigment Precursor Transporter (EPP) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273361 [Multi-domain] Cd Length: 617 Bit Score: 74.31 E-value: 5.96e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGltpknaRIEADTLRFGDIdLLKASAKERRLMRgKRMAMILQDpkySLN-PVMTIGRQ- 112
Cdd:TIGR00955 52 ELLAVMGSSGAGKTTLMNALAF------RSPKGVKGSGSV-LLNGMPIDAKEMR-AISAYVQQD---DLFiPTLTVREHl 120
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 113 -IMETLRTHEKIGSSEARQRTLAMLEAVQIRD--------PERVFDLfphevSGGMGQRVMIAMMLVCGPELLIADEPTS 183
Cdd:TIGR00955 121 mFQAHLRMPRRVTKKEKRERVDEVLQALGLRKcantrigvPGRVKGL-----SGGERKRLAFASELLTDPPLLFCDEPTS 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 736475199 184 ALDVTVQLEVLDILDKLVrDRGMGLIFVSHD--LRLVSSFcDRVLVMYAGKVV 234
Cdd:TIGR00955 196 GLDSFMAYSVVQVLKGLA-QKGKTIICTIHQpsSELFELF-DKIILMAEGRVA 246
|
|
| ModF |
COG1119 |
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA ... |
4-245 |
6.75e-15 |
|
ABC-type molybdenum transport system, ATPase component ModF/photorepair protein PhrA [Inorganic ion transport and metabolism];
Pssm-ID: 440736 [Multi-domain] Cd Length: 250 Bit Score: 72.42 E-value: 6.75e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIEADTL--RFGDIDL--LK 78
Cdd:COG1119 2 PLLELRNVTVRRGGKT----ILDDISWTVKPgEHWAILGPNGAGKSTLLSLITGDLPPTYGNDVRLFgeRRGGEDVweLR 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 asakerrlmrgKRMAMI---LQDPKYSLNPVM---------TIGRqimetlrtHEKIgSSEARQRTLAMLEAVQIRD-PE 145
Cdd:COG1119 78 -----------KRIGLVspaLQLRFPRDETVLdvvlsgffdSIGL--------YREP-TDEQRERARELLELLGLAHlAD 137
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 146 RVFdlfpHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRV 225
Cdd:COG1119 138 RPF----GTLSQGEQRRVLIARALVKDPELLILDEPTAGLDLGARELLLALLDKLAAEGAPTLVLVTHHVEEIPPGITHV 213
|
250 260
....*....|....*....|....*.
gi 736475199 226 LVMYAGKVV------EELASANLKEA 245
Cdd:COG1119 214 LLLKDGRVVaagpkeEVLTSENLSEA 239
|
|
| PRK13536 |
PRK13536 |
nodulation factor ABC transporter ATP-binding protein NodI; |
25-236 |
7.21e-15 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237419 [Multi-domain] Cd Length: 340 Bit Score: 73.33 E-value: 7.21e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 25 VRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKASAKER-RLMRgKRMAMILQ----D 98
Cdd:PRK13536 57 VNGLSFTVASgECFGLLGPNGAGKSTIARMILGMTSPDA---------GKITVLGVPVPARaRLAR-ARIGVVPQfdnlD 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 99 PKYSLNP-VMTIGRQIMETLRTHEKIGSSearqrtlaMLEAVQIrdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLI 177
Cdd:PRK13536 127 LEFTVREnLLVFGRYFGMSTREIEAVIPS--------LLEFARL---ESKADARVSDLSGGMKRRLTLARALINDPQLLI 195
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 178 ADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEE 236
Cdd:PRK13536 196 LDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVLEAGRKIAE 253
|
|
| PRK10575 |
PRK10575 |
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; |
155-245 |
9.68e-15 |
|
Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC;
Pssm-ID: 182561 [Multi-domain] Cd Length: 265 Bit Score: 72.13 E-value: 9.68e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI 227
|
90
....*....|.
gi 736475199 235 EELASANLKEA 245
Cdd:PRK10575 228 AQGTPAELMRG 238
|
|
| ABC_ThiQ_thiamine_transporter |
cd03298 |
ATP-binding cassette domain of the thiamine transport system; Part of the ... |
28-234 |
1.20e-14 |
|
ATP-binding cassette domain of the thiamine transport system; Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213265 [Multi-domain] Cd Length: 211 Bit Score: 70.98 E-value: 1.20e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 28 VSFTLGrERLGIVGESGSGKSQTGRAIMG-LTPKNARIEadtlrFGDIDLLKASAKERRLmrgkrmAMILQDPkySLNPV 106
Cdd:cd03298 19 LTFAQG-EITAIVGPSGSGKSTLLNLIAGfETPQSGRVL-----INGVDVTAAPPADRPV------SMLFQEN--NLFAH 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 107 MTIGRQIMETLRTHEKIgSSEARQRTLAMLEAVQIRDPERvfdLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALD 186
Cdd:cd03298 85 LTVEQNVGLGLSPGLKL-TAEDRQAIEVALARVGLAGLEK---RLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALD 160
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 736475199 187 VTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:cd03298 161 PALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIA 208
|
|
| TauB |
COG4525 |
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]; |
4-238 |
1.87e-14 |
|
ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443596 [Multi-domain] Cd Length: 262 Bit Score: 71.43 E-value: 1.87e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTGLVEAVRGVSFTLG-RERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDL----LK 78
Cdd:COG4525 2 SMLTVRHVSVRYPGGGQPQPALQDVSLTIEsGEFVVALGASGCGKTTLLNLIAGFLAPSS---------GEITLdgvpVT 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKERrlmrgkrmAMILQdpKYSLNPVMTIGRQIMETLRThEKIGSSEARQRTLAMLEAVQIRDPERVFdlfPHEVSGG 158
Cdd:COG4525 73 GPGADR--------GVVFQ--KDALLPWLNVLDNVAFGLRL-RGVPKAERRARAEELLALVGLADFARRR---IWQLSGG 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHD----LRLVSsfcdRVLVM--YAGK 232
Cdd:COG4525 139 MRQRVGIARALAADPRFLLMDEPFGALDALTREQMQELLLDVWQRTGKGVFLITHSveeaLFLAT----RLVVMspGPGR 214
|
....*.
gi 736475199 233 VVEELA 238
Cdd:COG4525 215 IVERLE 220
|
|
| cbiO |
PRK13648 |
cobalt transporter ATP-binding subunit; Provisional |
13-236 |
2.05e-14 |
|
cobalt transporter ATP-binding subunit; Provisional
Pssm-ID: 184207 [Multi-domain] Cd Length: 269 Bit Score: 71.32 E-value: 2.05e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 13 VSFPTRTGLVEAVRGVSFTLGRER-LGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFGDIDLlkasaKERRlmrgK 90
Cdd:PRK13648 13 VSFQYQSDASFTLKDVSFNIPKGQwTSIVGHNGSGKSTIAKLMIGIeKVKSGEIFYNNQAITDDNF-----EKLR----K 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 91 RMAMILQDP---------KYSLnpVMTIGRQIMETLRTHEKIGSSearqrtLAMLEAVQIRDPErvfdlfPHEVSGGMGQ 161
Cdd:PRK13648 84 HIGIVFQNPdnqfvgsivKYDV--AFGLENHAVPYDEMHRRVSEA------LKQVDMLERADYE------PNALSGGQKQ 149
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEE 236
Cdd:PRK13648 150 RVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKE 223
|
|
| PRK10908 |
PRK10908 |
cell division ATP-binding protein FtsE; |
23-239 |
2.11e-14 |
|
cell division ATP-binding protein FtsE;
Pssm-ID: 182829 [Multi-domain] Cd Length: 222 Bit Score: 70.67 E-value: 2.11e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 23 EAVRGVSFTLGRERLG-IVGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKERRLMRgKRMAMILQDPKy 101
Cdd:PRK10908 16 QALQGVTFHMRPGEMAfLTGHSGAGKSTLLKLICGIE----RPSAGKIWFSGHDITRLKNREVPFLR-RQIGMIFQDHH- 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 102 slnpvMTIGRQIMETLRTHEKI-GSS--EARQRTLAMLEAVQIRDPERVFdlfPHEVSGGMGQRVMIAMMLVCGPELLIA 178
Cdd:PRK10908 90 -----LLMDRTVYDNVAIPLIIaGASgdDIRRRVSAALDKVGLLDKAKNF---PIQLSGGEQQRVGIARAVVNKPAVLLA 161
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 179 DEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELAS 239
Cdd:PRK10908 162 DEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGG 221
|
|
| PRK13549 |
PRK13549 |
xylose transporter ATP-binding subunit; Provisional |
1-246 |
2.64e-14 |
|
xylose transporter ATP-binding subunit; Provisional
Pssm-ID: 184134 [Multi-domain] Cd Length: 506 Bit Score: 72.27 E-value: 2.64e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTrtglVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA-----RIEADTLRFGDI 74
Cdd:PRK13549 1 MMEYLLEMKNITKTFGG----VKALDNVSLKVRAgEIVSLCGENGAGKSTLMKVLSGVYPHGTyegeiIFEGEELQASNI 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 75 dllkaSAKERrlmrgKRMAMILQDpkYSLNPVMTIGRQIM--ETLRTHEKIGSSEARQRTLAMLEAVQIR-DPE-RVFDL 150
Cdd:PRK13549 77 -----RDTER-----AGIAIIHQE--LALVKELSVLENIFlgNEITPGGIMDYDAMYLRAQKLLAQLKLDiNPAtPVGNL 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 fphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYA 230
Cdd:PRK13549 145 -----GLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDL-KAHGIACIYISHKLNEVKAISDTICVIRD 218
|
250
....*....|....*.
gi 736475199 231 GKVVEELASANLKEAK 246
Cdd:PRK13549 219 GRHIGTRPAAGMTEDD 234
|
|
| cbiO |
PRK13641 |
energy-coupling factor transporter ATPase; |
28-235 |
3.55e-14 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 237456 [Multi-domain] Cd Length: 287 Bit Score: 71.01 E-value: 3.55e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 28 VSFTLGRER-LGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfGDIDLLKASAKERRLMRgKRMAMILQDPKYSL-- 103
Cdd:PRK13641 26 ISFELEEGSfVALVGHTGSGKSTLMQHFNALlKPSSGTITIA----GYHITPETGNKNLKKLR-KKVSLVFQFPEAQLfe 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 104 NPVMtigRQIMETLRThekIGSSE--ARQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEP 181
Cdd:PRK13641 101 NTVL---KDVEFGPKN---FGFSEdeAKEKALKWLKKVGL--SEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEP 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 736475199 182 TSALDVTVQLEVLDILdKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK13641 173 AAGLDPEGRKEMMQLF-KDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK 225
|
|
| ABCC_MsbA |
cd03251 |
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; ... |
13-251 |
3.77e-14 |
|
ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C; MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213218 [Multi-domain] Cd Length: 234 Bit Score: 69.95 E-value: 3.77e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 13 VSFPTRTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSqtgrAIMGLTPKNARIEADTLRFGDIDLLKASAKERRlmrgKR 91
Cdd:cd03251 6 VTFRYPGDGPPVLRDISLDIPAgETVALVGPSGSGKS----TLVNLIPRFYDVDSGRILIDGHDVRDYTLASLR----RQ 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 92 MAMILQDPkYSLNpvmtigrqimETLRTHEKIGSSEA-RQRTLAMLEAVQ----IRDPERVFDLFPHE----VSGGMGQR 162
Cdd:cd03251 78 IGLVSQDV-FLFN----------DTVAENIAYGRPGAtREEVEEAARAANahefIMELPEGYDTVIGErgvkLSGGQRQR 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSfCDRVLVMYAGKVVEELASANL 242
Cdd:cd03251 147 IAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTT--FVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223
|
....*....
gi 736475199 243 KEAKHPYTQ 251
Cdd:cd03251 224 LAQGGVYAK 232
|
|
| PRK14246 |
PRK14246 |
phosphate ABC transporter ATP-binding protein; Provisional |
37-235 |
5.49e-14 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 172734 [Multi-domain] Cd Length: 257 Bit Score: 70.08 E-value: 5.49e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 37 LGIVGESGSGKSQTGRAIMGLTP---KNARIEADTLRFGDiDLLKASAKERRlmrgKRMAMILQDPkySLNPVMTIGRQI 113
Cdd:PRK14246 39 FGIMGPSGSGKSTLLKVLNRLIEiydSKIKVDGKVLYFGK-DIFQIDAIKLR----KEVGMVFQQP--NPFPHLSIYDNI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 114 METLRTHekiGSSEARQRTLAMLEAV-QIRDPERVFDLF---PHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTV 189
Cdd:PRK14246 112 AYPLKSH---GIKEKREIKKIVEECLrKVGLWKEVYDRLnspASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVN 188
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 736475199 190 QLEVLDILDKLVRDrgMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK14246 189 SQAIEKLITELKNE--IAIVIVSHNPQQVARVADYVAFLYNGELVE 232
|
|
| ABC_FeS_Assembly |
cd03217 |
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of ... |
6-236 |
8.80e-14 |
|
ABC-type transport system involved in Fe-S cluster assembly, ATPase component; Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Pssm-ID: 213184 [Multi-domain] Cd Length: 200 Bit Score: 68.32 E-value: 8.80e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSfptrTGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtPKnARIEADTLRFGDIDLLKASAKER 84
Cdd:cd03217 1 LEIKDLHVS----VGGKEILKGVNLTIKKgEVHALMGPNGSGKSTLAKTIMGH-PK-YEVTEGEILFKGEDITDLPPEER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMrGKRMAMilQdpkyslNPVMTIGRQIMETLRThekigssearqrtlamleavqirdperVFDLFphevSGGMGQRVM 164
Cdd:cd03217 75 ARL-GIFLAF--Q------YPPEIPGVKNADFLRY---------------------------VNEGF----SGGEKKRNE 114
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSF-CDRVLVMYAGKVVEE 236
Cdd:cd03217 115 ILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKL-REEGKSVLIITHYQRLLDYIkPDRVHVLYDGRIVKS 186
|
|
| cbiO |
PRK13643 |
energy-coupling factor transporter ATPase; |
38-234 |
1.04e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184203 [Multi-domain] Cd Length: 288 Bit Score: 69.76 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 38 GIVGESGSGKSQTGRAIMGLTPKNArieaDTLRFGDIDLLKASA-KERRLMRgKRMAMILQDPKYSLNPvMTIGRQIMET 116
Cdd:PRK13643 36 ALIGHTGSGKSTLLQHLNGLLQPTE----GKVTVGDIVVSSTSKqKEIKPVR-KKVGVVFQFPESQLFE-ETVLKDVAFG 109
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 117 LRTHeKIGSSEARQRTLAMLEAVQIRdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDI 196
Cdd:PRK13643 110 PQNF-GIPKEKAEKIAAEKLEMVGLA--DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQL 186
|
170 180 190
....*....|....*....|....*....|....*...
gi 736475199 197 LDKlVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK13643 187 FES-IHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII 223
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
6-234 |
1.16e-13 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 67.96 E-value: 1.16e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVEA--VRGVSFTLG-RERLGIVGESGSGKSQTGRAIMGLTpKNARIEadtlrfGDIdLLKASAK 82
Cdd:cd03213 4 LSFRNLTVTVKSSPSKSGKqlLKNVSGKAKpGELTAIMGPSGAGKSTLLNALAGRR-TGLGVS------GEV-LINGRPL 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLMRgKRMAMILQDpkyslnpvmtigRQIMETLRTHEkigssearqrtlAMLEAVQIRDpervfdlfpheVSGGMGQR 162
Cdd:cd03213 76 DKRSFR-KIIGYVPQD------------DILHPTLTVRE------------TLMFAAKLRG-----------LSGGERKR 119
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLR-LVSSFCDRVLVMYAGKVV 234
Cdd:cd03213 120 VSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRL-ADTGRTIICSIHQPSsEIFELFDKLLLLSQGRVI 191
|
|
| cbiO |
PRK13640 |
energy-coupling factor transporter ATPase; |
1-236 |
1.19e-13 |
|
energy-coupling factor transporter ATPase;
Pssm-ID: 184200 [Multi-domain] Cd Length: 282 Bit Score: 69.44 E-value: 1.19e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTglVEAVRGVSFTLGRER-LGIVGESGSGKSQTGRAIMG-LTP---KNARIeadtlrfgDID 75
Cdd:PRK13640 1 MKDNIVEFKHVSFTYPDSK--KPALNDISFSIPRGSwTALIGHNGSGKSTISKLINGlLLPddnPNSKI--------TVD 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 76 LLKASAKERRLMRgKRMAMILQDPKyslNPVM--TIGRQIMETLRtHEKIGSSEARQRTLAMLEAVQIRDperVFDLFPH 153
Cdd:PRK13640 71 GITLTAKTVWDIR-EKVGIVFQNPD---NQFVgaTVGDDVAFGLE-NRAVPRPEMIKIVRDVLADVGMLD---YIDSEPA 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRlVSSFCDRVLVMYAGKV 233
Cdd:PRK13640 143 NLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDID-EANMADQVLVLDDGKL 221
|
...
gi 736475199 234 VEE 236
Cdd:PRK13640 222 LAQ 224
|
|
| modC |
PRK11144 |
molybdenum ABC transporter ATP-binding protein ModC; |
39-244 |
1.27e-13 |
|
molybdenum ABC transporter ATP-binding protein ModC;
Pssm-ID: 182993 [Multi-domain] Cd Length: 352 Bit Score: 69.90 E-value: 1.27e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGLT-PKNARIeadtlRFGDIDLLKASAK-----ERRlmrgkRMAMILQD----PKYSLNPVMT 108
Cdd:PRK11144 29 IFGRSGAGKTSLINAISGLTrPQKGRI-----VLNGRVLFDAEKGiclppEKR-----RIGYVFQDarlfPHYKVRGNLR 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 109 IGrqIMETLRTH-EKIgssearqrtlamleaVQIRDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDV 187
Cdd:PRK11144 99 YG--MAKSMVAQfDKI---------------VALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 188 TVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVeelASANLKE 244
Cdd:PRK11144 162 PRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVK---AFGPLEE 215
|
|
| ABCG_White |
cd03234 |
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ... |
4-234 |
1.44e-13 |
|
White pigment protein homolog of ABCG transporter subfamily; The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners.
Pssm-ID: 213201 [Multi-domain] Cd Length: 226 Bit Score: 68.07 E-value: 1.44e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGltpknaRIEADTLRFGDIdLLKASAK 82
Cdd:cd03234 2 RVLPWWDVGLKAKNWNKYARILNDVSLHVeSGQVMAILGSSGSGKTTLLDAISG------RVEGGGTTSGQI-LFNGQPR 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLMRgKRMAMILQDPkySLNPVMTIGRQI--METLRTHEKIGSSEARQRTlamlEAVQIRD--PERVFDLFPHEVSGG 158
Cdd:cd03234 75 KPDQFQ-KCVAYVRQDD--ILLPGLTVRETLtyTAILRLPRKSSDAIRKKRV----EDVLLRDlaLTRIGGNLVKGISGG 147
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLR--LVSSFcDRVLVMYAGKVV 234
Cdd:cd03234 148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRsdLFRLF-DRILLLSSGEIV 223
|
|
| PRK13537 |
PRK13537 |
nodulation factor ABC transporter ATP-binding protein NodI; |
1-246 |
4.31e-13 |
|
nodulation factor ABC transporter ATP-binding protein NodI;
Pssm-ID: 237420 [Multi-domain] Cd Length: 306 Bit Score: 67.91 E-value: 4.31e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKA 79
Cdd:PRK13537 3 MSVAPIDFRNVEKRYGDKL----VVDGLSFHVQRgECFGLLGPNGAGKTTTLRMLLGLTHPDA---------GSISLCGE 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRLMRGKRMAMILQ----DPKYSlnpvmtigrqIMETLRTHEK---IGSSEARQRTLAMLEAVQIrdpERVFDLFP 152
Cdd:PRK13537 70 PVPSRARHARQRVGVVPQfdnlDPDFT----------VRENLLVFGRyfgLSAAAARALVPPLLEFAKL---ENKADAKV 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 153 HEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:PRK13537 137 GELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFMEEAERLCDRLCVIEEGR 215
|
250
....*....|....
gi 736475199 233 VVEELASANLKEAK 246
Cdd:PRK13537 216 KIAEGAPHALIESE 229
|
|
| PRK13657 |
PRK13657 |
glucan ABC transporter ATP-binding protein/ permease; |
9-255 |
8.05e-13 |
|
glucan ABC transporter ATP-binding protein/ permease;
Pssm-ID: 184214 [Multi-domain] Cd Length: 588 Bit Score: 68.06 E-value: 8.05e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 9 ENLRVSFPTRTglvEAVRGVSFT-LGRERLGIVGESGSGKSQT----GRAimgLTPKNARIEADTLRFGDIDLlkasAKE 83
Cdd:PRK13657 338 DDVSFSYDNSR---QGVEDVSFEaKPGQTVAIVGPTGAGKSTLinllQRV---FDPQSGRILIDGTDIRTVTR----ASL 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrgkRMAMILQDPkyslnpvMTIGRQIMETLR------THEKIGSSEARQRTLAMLEavqiRDPERvFDLFPHE--- 154
Cdd:PRK13657 408 RR-----NIAVVFQDA-------GLFNRSIEDNIRvgrpdaTDEEMRAAAERAQAHDFIE----RKPDG-YDTVVGErgr 470
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 -VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIfvSHDLRLVSSfCDRVLVMYAGKV 233
Cdd:PRK13657 471 qLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFII--AHRLSTVRN-ADRILVFDNGRV 547
|
250 260
....*....|....*....|....*..
gi 736475199 234 VE-----ELASANLKEAKHPYTQGLLN 255
Cdd:PRK13657 548 VEsgsfdELVARGGRFAALLRAQGMLQ 574
|
|
| ntrCD |
TIGR01184 |
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits ... |
25-231 |
9.83e-13 |
|
nitrate transport ATP-binding subunits C and D; This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. [Transport and binding proteins, Anions, Transport and binding proteins, Other]
Pssm-ID: 130252 [Multi-domain] Cd Length: 230 Bit Score: 65.95 E-value: 9.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 25 VRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarieaDTLRFGDIDLlkaSAKERRLMRGKRMaMILQDpkYSL 103
Cdd:TIGR01184 1 LKGVNLTIQQgEFISLIGHSGCGKSTLLNLISGL---------AQPTSGGVIL---EGKQITEPGPDRM-VVFQN--YSL 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 104 NPVMTIGRQI-METLRTHEKIGSSEARQRTLAMLEAVQIRdpeRVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPT 182
Cdd:TIGR01184 66 LPWLTVRENIaLAVDRVLPDLSKSERRAIVEEHIALVGLT---EAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPF 142
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 736475199 183 SALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:TIGR01184 143 GALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNG 191
|
|
| ABCD_peroxisomal_ALDP |
cd03223 |
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding ... |
6-226 |
1.18e-12 |
|
ATP-binding cassette domain of peroxisomal transporter, subfamily D; Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic).
Pssm-ID: 213190 [Multi-domain] Cd Length: 166 Bit Score: 64.48 E-value: 1.18e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVEAVrgvSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarieadtLRFGDIDLLkasaker 84
Cdd:cd03223 1 IELENLSLATPDGRVLLKDL---SFEIKPgDRLLITGPSGTGKSSLFRALAGLWP---------WGSGRIGMP------- 61
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 rlmRGKRMAMILQDPKyslnpvMTIGrqimeTLRthekigssearqrtlamlEAVqirdpervfdLFP--HEVSGGMGQR 162
Cdd:cd03223 62 ---EGEDLLFLPQRPY------LPLG-----TLR------------------EQL----------IYPwdDVLSGGEQQR 99
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 163 VMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILdklvRDRGMGLIFVSHDLRLvSSFCDRVL 226
Cdd:cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL----KELGITVISVGHRPSL-WKFHDRVL 158
|
|
| BtuD |
COG4138 |
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism]; ... |
27-245 |
1.37e-12 |
|
ABC-type cobalamin transport system, ATPase component BtuD [Coenzyme transport and metabolism];
Pssm-ID: 443313 [Multi-domain] Cd Length: 248 Bit Score: 65.63 E-value: 1.37e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 27 GVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNARIeadtlRFGDIDLLKASAKERRLMRgkrmAMILQDPkySLNP 105
Cdd:COG4138 14 PISAQVNAgELIHLIGPNGAGKSTLLARMAGLLPGQGEI-----LLNGRPLSDWSAAELARHR----AYLSQQQ--SPPF 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 106 VMTIGrqimETLRTH-EKIGSSEARQRTLAML-EAVQIRDpervfdLFPHEV---SGGMGQRVMIAMMLV-----CGPE- 174
Cdd:COG4138 83 AMPVF----QYLALHqPAGASSEAVEQLLAQLaEALGLED------KLSRPLtqlSGGEWQRVRLAAVLLqvwptINPEg 152
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 175 -LLIADEPTSALDVTVQLevldILDKLVR---DRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV------EELASANLKE 244
Cdd:COG4138 153 qLLLLDEPMNSLDVAQQA----ALDRLLRelcQQGITVVMSSHDLNHTLRHADRVWLLKQGKLVasgetaEVMTPENLSE 228
|
.
gi 736475199 245 A 245
Cdd:COG4138 229 V 229
|
|
| YddA |
COG4178 |
ABC-type uncharacterized transport system, permease and ATPase components [General function ... |
6-240 |
1.42e-12 |
|
ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only];
Pssm-ID: 443337 [Multi-domain] Cd Length: 571 Bit Score: 67.14 E-value: 1.42e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVEavrGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarieadtlrFGD--IDLLkasak 82
Cdd:COG4178 363 LALEDLTLRTPDGRPLLE---DLSLSLKPgERLLITGPSGSGKSTLLRAIAGLWP-----------YGSgrIARP----- 423
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 errlmRGKRMAMILQDPkYslnpvMTIGrqimeTLR-------THEKIGSSEARQrtlaMLEAVQIRD-PERVF--DLFP 152
Cdd:COG4178 424 -----AGARVLFLPQRP-Y-----LPLG-----TLReallypaTAEAFSDAELRE----ALEAVGLGHlAERLDeeADWD 483
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 153 HEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLdildKLVRDR--GMGLIFVSHDLRLvSSFCDRVLVMYA 230
Cdd:COG4178 484 QVLSLGEQQRLAFARLLLHKPDWLFLDEATSALDEENEAALY----QLLREElpGTTVISVGHRSTL-AAFHDRVLELTG 558
|
250
....*....|
gi 736475199 231 GKVVEELASA 240
Cdd:COG4178 559 DGSWQLLPAE 568
|
|
| ssuB |
PRK11247 |
aliphatic sulfonates transport ATP-binding subunit; Provisional |
39-233 |
2.80e-12 |
|
aliphatic sulfonates transport ATP-binding subunit; Provisional
Pssm-ID: 183055 [Multi-domain] Cd Length: 257 Bit Score: 65.08 E-value: 2.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGLTPKNArieaDTLRFGDIDLLKASaKERRLMrgkrmamiLQDPKysLNPVMTIGRQIMETLR 118
Cdd:PRK11247 43 VVGRSGCGKSTLLRLLAGLETPSA----GELLAGTAPLAEAR-EDTRLM--------FQDAR--LLPWKKVIDNVGLGLK 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 119 THekigsseARQRTLAMLEAVQIRDpeRVFDlFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILD 198
Cdd:PRK11247 108 GQ-------WRDAALQALAAVGLAD--RANE-WPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIE 177
|
170 180 190
....*....|....*....|....*....|....*
gi 736475199 199 KLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK11247 178 SLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
|
| AztA |
NF040873 |
zinc ABC transporter ATP-binding protein AztA; |
24-226 |
2.84e-12 |
|
zinc ABC transporter ATP-binding protein AztA;
Pssm-ID: 468810 [Multi-domain] Cd Length: 191 Bit Score: 63.79 E-value: 2.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGLtpknarieadtlrfgdidlLKASAKERRLMRGKRMAMILQdpKYS 102
Cdd:NF040873 7 VLHGVDLTIPAGSLtAVVGPNGSGKSTLLKVLAGV-------------------LRPTSGTVRRAGGARVAYVPQ--RSE 65
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 103 LNP--------VMTIGR-QIMETLRTHekigSSEARQRTLAMLEAVQIRDPE-RVFDlfphEVSGGMGQRVMIAMMLVCG 172
Cdd:NF040873 66 VPDslpltvrdLVAMGRwARRGLWRRL----TRDDRAAVDDALERVGLADLAgRQLG----ELSGGQRQRALLAQGLAQE 137
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 736475199 173 PELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVL 226
Cdd:NF040873 138 ADLLLLDEPTTGLDAESRERIIALLAEE-HARGATVVVVTHDLELVRRADPCVL 190
|
|
| PRK14267 |
PRK14267 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-235 |
4.80e-12 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184596 [Multi-domain] Cd Length: 253 Bit Score: 64.48 E-value: 4.80e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGLTPKN--ARIEADTLRFG-DIDLLKASA 81
Cdd:PRK14267 5 IETVNLRVYY----GSNHVIKGVDLKIPQNGVfALMGPSGCGKSTLLRTFNRLLELNeeARVEGEVRLFGrNIYSPDVDP 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRlmrgKRMAMILQDPkyslNPV--MTIGRQIMETLRTHEKIGS-SEARQRTLAMLEAVQIRD--PERVFDlFPHEVS 156
Cdd:PRK14267 81 IEVR----REVGMVFQYP----NPFphLTIYDNVAIGVKLNGLVKSkKELDERVEWALKKAALWDevKDRLND-YPSNLS 151
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrgMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK14267 152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKE--YTIVLVTHSPAQAARVSDYVAFLYLGKLIE 228
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
5-240 |
4.84e-12 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 65.58 E-value: 4.84e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRTGLVeAVRGVSFTLGR-ERLGIVGESGSGKSQT---------GRAIMGLTPKNARiEADTLRFGD- 73
Cdd:NF040905 257 VFEVKNWTVYHPLHPERK-VVDDVSLNVRRgEIVGIAGLMGAGRTELamsvfgrsyGRNISGTVFKDGK-EVDVSTVSDa 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 74 IDLLKASAKERRlmrgKRMAMILQDpkyslnpvmTIGRQImeTLRTHEKIGS----SEARQRTLA--MLEAVQIRDP--- 144
Cdd:NF040905 335 IDAGLAYVTEDR----KGYGLNLID---------DIKRNI--TLANLGKVSRrgviDENEEIKVAeeYRKKMNIKTPsvf 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 145 ERVFDLfphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVrDRGMGLIFVSHDLRLVSSFCDR 224
Cdd:NF040905 400 QKVGNL-----SGGNQQKVVLSKWLFTDPDVLILDEPTRGIDVGAKYEIYTIINELA-AEGKGVIVISSELPELLGMCDR 473
|
250
....*....|....*.
gi 736475199 225 VLVMYAGKVVEELASA 240
Cdd:NF040905 474 IYVMNEGRITGELPRE 489
|
|
| ABCC_Protease_Secretion |
cd03246 |
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of ... |
6-233 |
5.94e-12 |
|
ATP-binding cassette domain of PrtD, subfamily C; This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA.
Pssm-ID: 213213 [Multi-domain] Cd Length: 173 Bit Score: 62.62 E-value: 5.94e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLVeaVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFGDIDLLKasake 83
Cdd:cd03246 1 LEVENVSFRYPGAEPPV--LRNVSFSIEPgESLAIIGPSGSGKSTLARLILGLlRPTSGRVRLDGADISQWDPNE----- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 rrlmRGKRMAMILQDpkyslnpVMTIGRQIMETLrthekigssearqrtlamleavqirdpervfdlfpheVSGGMGQRV 163
Cdd:cd03246 74 ----LGDHVGYLPQD-------DELFSGSIAENI-------------------------------------LSGGQRQRL 105
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSfCDRVLVMYAGKV 233
Cdd:cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAAL-KAAGATRIVIAHRPETLAS-ADRILVLEDGRV 173
|
|
| anch_rpt_ABC |
TIGR03771 |
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ... |
35-251 |
6.97e-12 |
|
anchored repeat-type ABC transporter, ATP-binding subunit; This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. [Transport and binding proteins, Unknown substrate]
Pssm-ID: 163483 [Multi-domain] Cd Length: 223 Bit Score: 63.33 E-value: 6.97e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKASAKERRLMRG---KRMAMILQDPKYSLNPVMTiGR 111
Cdd:TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGLIPPAK---------GTVKVAGASPGKGWRHIGyvpQRHEFAWDFPISVAHTVMS-GR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 112 QIMETLRTHEKIGSSEARQRTLAMLEAVQIRDpeRVFDlfphEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQL 191
Cdd:TIGR03771 77 TGHIGWLRRPCVADFAAVRDALRRVGLTELAD--RPVG----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 192 EVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVlVMYAGKVVEELASANLKEAKhPYTQ 251
Cdd:TIGR03771 151 LLTELFIELAGA-GTAILMTTHDLAQAMATCDRV-VLLNGRVIADGTPQQLQDPA-PWMT 207
|
|
| PRK15056 |
PRK15056 |
manganese/iron ABC transporter ATP-binding protein; |
1-234 |
8.11e-12 |
|
manganese/iron ABC transporter ATP-binding protein;
Pssm-ID: 185016 [Multi-domain] Cd Length: 272 Bit Score: 64.13 E-value: 8.11e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFptRTGLVeAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLTpknarieadTLRFGDIDLLKA 79
Cdd:PRK15056 2 MQQAGIVVNDVTVTW--RNGHT-ALRDASFTVpGGSIAALVGVNGSGKSTLFKALMGFV---------RLASGKISILGQ 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAkeRRLMRGKRMAMILQDPKYS------LNPVMTIGRQ-IMETLRthekIGSSEARQRTLAMLEAVQIRDpervfdlFP 152
Cdd:PRK15056 70 PT--RQALQKNLVAYVPQSEEVDwsfpvlVEDVVMMGRYgHMGWLR----RAKKRDRQIVTAALARVDMVE-------FR 136
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 153 H----EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVlVM 228
Cdd:PRK15056 137 HrqigELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLREL-RDEGKTMLVSTHNLGSVTEFCDYT-VM 214
|
....*.
gi 736475199 229 YAGKVV 234
Cdd:PRK15056 215 VKGTVL 220
|
|
| ABCF_EF-3 |
cd03221 |
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is ... |
6-228 |
1.14e-11 |
|
ATP-binding cassette domain of elongation factor 3, subfamily F; Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Pssm-ID: 213188 [Multi-domain] Cd Length: 144 Bit Score: 61.31 E-value: 1.14e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGLveavRGVSFTLGR-ERLGIVGESGSGKSqtgraimgltpknarieadTLrfgdidlLKasaker 84
Cdd:cd03221 1 IELENLSKTYGGKLLL----KDISLTINPgDRIGLVGRNGAGKS-------------------TL-------LK------ 44
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 rLMRGKrmaMILQDPKYSLNPVMTIGrqimetlrthekigssearqrtlamleavqirdperVFDLFphevSGGMGQRVM 164
Cdd:cd03221 45 -LIAGE---LEPDEGIVTWGSTVKIG------------------------------------YFEQL----SGGEKMRLA 80
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVT--VQLEvldilDKLVRDRGmGLIFVSHDLRLVSSFCDRVLVM 228
Cdd:cd03221 81 LAKLLLENPNLLLLDEPTNHLDLEsiEALE-----EALKEYPG-TVILVSHDRYFLDQVATKIIEL 140
|
|
| ABCC_Glucan_exporter_like |
cd03254 |
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan ... |
24-236 |
1.20e-11 |
|
ATP-binding cassette domain of glucan transporter and related proteins, subfamily C; Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213221 [Multi-domain] Cd Length: 229 Bit Score: 63.01 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfgDIDLLKASAKERRlmrgKRMAMILQDPkY 101
Cdd:cd03254 18 VLKDINFSIKPgETVAIVGPTGAGKTTLINLLMRFyDPQKGQILID-----GIDIRDISRKSLR----SMIGVVLQDT-F 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 102 SLNpvmtigRQIMETLRthekIGSSEARQ-RTLAMLEAVQ----IRDPERVFDLFPHE----VSGGMGQRVMIAMMLVCG 172
Cdd:cd03254 88 LFS------GTIMENIR----LGRPNATDeEVIEAAKEAGahdfIMKLPNGYDTVLGEnggnLSQGERQLLAIARAMLRD 157
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 173 PELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVsSFCDRVLVMYAGKVVEE 236
Cdd:cd03254 158 PKILILDEATSNIDTETEKLIQEALEKLMKGR--TSIIIAHRLSTI-KNADKILVLDDGKIIEE 218
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
6-236 |
1.20e-11 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 64.64 E-value: 1.20e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLrvsfptrTGlvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDL----LKAS 80
Cdd:PRK10762 258 LKVDNL-------SG--PGVNDVSFTLRKgEILGVSGLMGAGRTELMKVLYGALPRTS---------GYVTLdgheVVTR 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 AKERRLMRGkrMAMILQDPKyslNPVMTIGRQIMETL---------RTHEKIGSSEARQRTLAMLEAVQIRDPERvfDLF 151
Cdd:PRK10762 320 SPQDGLANG--IVYISEDRK---RDGLVLGMSVKENMsltalryfsRAGGSLKHADEQQAVSDFIRLFNIKTPSM--EQA 392
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 152 PHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:PRK10762 393 IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAE-GLSIILVSSEMPEVLGMSDRILVMHEG 471
|
....*
gi 736475199 232 KVVEE 236
Cdd:PRK10762 472 RISGE 476
|
|
| PRK11000 |
PRK11000 |
maltose/maltodextrin ABC transporter ATP-binding protein MalK; |
40-233 |
1.77e-11 |
|
maltose/maltodextrin ABC transporter ATP-binding protein MalK;
Pssm-ID: 182893 [Multi-domain] Cd Length: 369 Bit Score: 63.51 E-value: 1.77e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 40 VGESGSGKSQTGRAIMGLTpknaRIEADTLRFGDIDLLKASAKERRLmrgkrmAMILQdpKYSLNPVMTIGRQIMETLRT 119
Cdd:PRK11000 35 VGPSGCGKSTLLRMIAGLE----DITSGDLFIGEKRMNDVPPAERGV------GMVFQ--SYALYPHLSVAENMSFGLKL 102
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 120 hEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDK 199
Cdd:PRK11000 103 -AGAKKEEINQRVNQVAEVLQL---AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISR 178
|
170 180 190
....*....|....*....|....*....|....
gi 736475199 200 LVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK11000 179 LHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRV 212
|
|
| PstB |
COG1117 |
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; ... |
6-235 |
1.78e-11 |
|
ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 440734 [Multi-domain] Cd Length: 258 Bit Score: 62.75 E-value: 1.78e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFptrtGLVEAVRGVSFTLGRER-LGIVGESGSGKSQTGRAI--MG-LTPkNARIEADtLRFGDIDLLKAS- 80
Cdd:COG1117 12 IEVRNLNVYY----GDKQALKDINLDIPENKvTALIGPSGCGKSTLLRCLnrMNdLIP-GARVEGE-ILLDGEDIYDPDv 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 81 --AKERRlmrgkRMAMILQDPkyslNPV-MTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDpervfdlfphEV-- 155
Cdd:COG1117 86 dvVELRR-----RVGMVFQKP----NPFpKSIYDNVAYGLRLHGIKSKSELDEIVEESLRKAALWD----------EVkd 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 ---------SGGMGQRVMIAMMLVCGPELLIADEPTSALDV--TVQLEvlDILDKLVRDrgMGLIFVSHDL---RLVSsf 221
Cdd:COG1117 147 rlkksalglSGGQQQRLCIARALAVEPEVLLMDEPTSALDPisTAKIE--ELILELKKD--YTIVIVTHNMqqaARVS-- 220
|
250
....*....|....
gi 736475199 222 cDRVLVMYAGKVVE 235
Cdd:COG1117 221 -DYTAFFYLGELVE 233
|
|
| SufC |
COG0396 |
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, ... |
6-238 |
2.37e-11 |
|
Fe-S cluster assembly ATPase SufC [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 440165 [Multi-domain] Cd Length: 245 Bit Score: 62.01 E-value: 2.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtPKNaRIEADTLRFGDIDLLKASAKER 84
Cdd:COG0396 1 LEIKNLHVSVEGK----EILKGVNLTIKPgEVHAIMGPNGSGKSTLAKVLMGH-PKY-EVTSGSILLDGEDILELSPDER 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMrGKRMAMilQdpkyslNPVMTIGRQIMETLRT------HEKIGSSEARQRTLAMLEAVQIrDPE---R-VFDLFphe 154
Cdd:COG0396 75 ARA-GIFLAF--Q------YPVEIPGVSVSNFLRTalnarrGEELSAREFLKLLKEKMKELGL-DEDfldRyVNEGF--- 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 vSGGMGQRVMIAMMLVCGPELLIADEPTSALDV-TVQLeVLDILDKLvRDRGMGLIFVSHDLRLVSSF-CDRVLVMYAGK 232
Cdd:COG0396 142 -SGGEKKRNEILQMLLLEPKLAILDETDSGLDIdALRI-VAEGVNKL-RSPDRGILIITHYQRILDYIkPDFVHVLVDGR 218
|
250
....*....|
gi 736475199 233 VVE----ELA 238
Cdd:COG0396 219 IVKsggkELA 228
|
|
| PRK10253 |
PRK10253 |
iron-enterobactin ABC transporter ATP-binding protein; |
155-244 |
3.35e-11 |
|
iron-enterobactin ABC transporter ATP-binding protein;
Pssm-ID: 182336 [Multi-domain] Cd Length: 265 Bit Score: 61.93 E-value: 3.35e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK10253 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIV 223
|
90
....*....|....*
gi 736475199 235 -----EELASANLKE 244
Cdd:PRK10253 224 aqgapKEIVTAELIE 238
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
156-240 |
6.09e-11 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 62.38 E-value: 6.09e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK15439 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ-NVAVLFISSDLEEIEQMADRVLVMHQGEISG 483
|
....*
gi 736475199 236 ELASA 240
Cdd:PRK15439 484 ALTGA 488
|
|
| CeuD |
COG4604 |
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and ... |
7-236 |
6.11e-11 |
|
ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism];
Pssm-ID: 443654 [Multi-domain] Cd Length: 252 Bit Score: 61.25 E-value: 6.11e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 7 TVENLRVSFPTRTglveAVRGVSFTLGRERL-GIVGESGSGKSqTGRAIMG--LTPKNARIEADTLrfgDIdllkASAKE 83
Cdd:COG4604 3 EIKNVSKRYGGKV----VLDDVSLTIPKGGItALIGPNGAGKS-TLLSMISrlLPPDSGEVLVDGL---DV----ATTPS 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLmrGKRMAMILQDPkySLNPVMTI-------------GRQimeTLRTHEKIgssearQRTLAMLEAVQIRDpeRVFDl 150
Cdd:COG4604 71 REL--AKRLAILRQEN--HINSRLTVrelvafgrfpyskGRL---TAEDREII------DEAIAYLDLEDLAD--RYLD- 134
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 fphEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYA 230
Cdd:COG4604 135 ---ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQMMKLLRRLADELGKTVVIVLHDINFASCYADHIVAMKD 211
|
....*.
gi 736475199 231 GKVVEE 236
Cdd:COG4604 212 GRVVAQ 217
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
156-246 |
7.29e-11 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 62.24 E-value: 7.29e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVrDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK11288 398 SGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA-AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAG 476
|
90
....*....|.
gi 736475199 236 ELASANLKEAK 246
Cdd:PRK11288 477 ELAREQATERQ 487
|
|
| CydC |
TIGR02868 |
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family ... |
6-215 |
1.23e-10 |
|
thiol reductant ABC exporter, CydC subunit; The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Pssm-ID: 274331 [Multi-domain] Cd Length: 530 Bit Score: 61.61 E-value: 1.23e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPtrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKnariEADTLRFGDIDLLKASAKER 84
Cdd:TIGR02868 335 LELRDLSAGYP---GAPPVLDGVSLDLPPgERVAILGPSGSGKSTLLATLAGLLDP----LQGEVTLDGVPVSSLDQDEV 407
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RlmrgKRMAMILQDPKyslnpvmTIGRQIMETLRthekIGSSEAR-QRTLAMLEAVQ----IRDPERVFDLFPHE----V 155
Cdd:TIGR02868 408 R----RRVSVCAQDAH-------LFDTTVRENLR----LARPDATdEELWAALERVGladwLRALPDGLDTVLGEggarL 472
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILdkLVRDRGMGLIFVSHDL 215
Cdd:TIGR02868 473 SGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDL--LAALSGRTVVLITHHL 530
|
|
| ugpC |
PRK11650 |
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; |
6-233 |
1.47e-10 |
|
sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC;
Pssm-ID: 236947 [Multi-domain] Cd Length: 356 Bit Score: 60.63 E-value: 1.47e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPtrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknARIEADTLRFGDIDLLKASAKER 84
Cdd:PRK11650 4 LKLQAVRKSYD---GKTQVIKGIDLDVADgEFIVLVGPSGCGKSTLLRMVAGL----ERITSGEIWIGGRVVNELEPADR 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLmrgkrmAMILQDpkYSLNPVMTIgRQIMETLRTHEKIGSSEARQRtlaMLEAVQIRDPERVFDLFPHEVSGGMGQRVM 164
Cdd:PRK11650 77 DI------AMVFQN--YALYPHMSV-RENMAYGLKIRGMPKAEIEER---VAEAARILELEPLLDRKPRELSGGQRQRVA 144
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 165 IAMMLVCGPELLIADEPTSALD----VTVQLEvldiLDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK11650 145 MGRAIVREPAVFLFDEPLSNLDaklrVQMRLE----IQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVA 213
|
|
| xylG |
TIGR02633 |
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose ... |
5-244 |
2.03e-10 |
|
D-xylose ABC transporter, ATP-binding protein; Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 131681 [Multi-domain] Cd Length: 500 Bit Score: 60.61 E-value: 2.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFptrtGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLTPKNARIeadtlrfGDIDLLKASAKE 83
Cdd:TIGR02633 1 LLEMKGIVKTF----GGVKALDGIDLEVrPGECVGLCGENGAGKSTLMKILSGVYPHGTWD-------GEIYWSGSPLKA 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRLMRGKRMAMILQDPKYSLNPVMTIGRQIM---ETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLfpHEVSGGMG 160
Cdd:TIGR02633 70 SNIRDTERAGIVIIHQELTLVPELSVAENIFlgnEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV--GDYGGGQQ 147
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 161 QRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASA 240
Cdd:TIGR02633 148 QLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226
|
....
gi 736475199 241 NLKE 244
Cdd:TIGR02633 227 TMSE 230
|
|
| tauB |
PRK11248 |
taurine ABC transporter ATP-binding subunit; |
5-238 |
2.25e-10 |
|
taurine ABC transporter ATP-binding subunit;
Pssm-ID: 183056 [Multi-domain] Cd Length: 255 Bit Score: 59.71 E-value: 2.25e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRtglvEAVRGVSFTLGRERLGIV-GESGSGKSQTGRAIMG-LTPKNARIEADTLRfgdidlLKASAK 82
Cdd:PRK11248 1 MLQISHLYADYGGK----PALEDINLTLESGELLVVlGPSGCGKTTLLNLIAGfVPYQHGSITLDGKP------VEGPGA 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERrlmrgkrmAMILQD----PKYSLNPVMTIGRQImetlrthEKIGSSEARQRTLAMLEAVQIRDPERvfdLFPHEVSGG 158
Cdd:PRK11248 71 ER--------GVVFQNegllPWRNVQDNVAFGLQL-------AGVEKMQRLEIAHQMLKKVGLEGAEK---RYIWQLSGG 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 159 MGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRlVSSFCDRVLVMYA---GKVVE 235
Cdd:PRK11248 133 QRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSpgpGRVVE 211
|
...
gi 736475199 236 ELA 238
Cdd:PRK11248 212 RLP 214
|
|
| PRK14258 |
PRK14258 |
phosphate ABC transporter ATP-binding protein; Provisional |
6-223 |
2.38e-10 |
|
phosphate ABC transporter ATP-binding protein; Provisional
Pssm-ID: 184593 [Multi-domain] Cd Length: 261 Bit Score: 59.67 E-value: 2.38e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRtglvEAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGLTPKNARIEADtlrfGDIDLLKASAKER 84
Cdd:PRK14258 8 IKVNNLSFYYDTQ----KILEGVSMEIYQSKVtAIIGPSGCGKSTFLKCLNRMNELESEVRVE----GRVEFFNQNIYER 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 R--LMRGKRMAMILQdPKYSLNPvMTIGRQIMETLRT---HEKI---GSSEARQRTLAMLEAVQIRDPERVFDLfphevS 156
Cdd:PRK14258 80 RvnLNRLRRQVSMVH-PKPNLFP-MSVYDNVAYGVKIvgwRPKLeidDIVESALKDADLWDEIKHKIHKSALDL-----S 152
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCD 223
Cdd:PRK14258 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219
|
|
| ccmA |
TIGR01189 |
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein ... |
6-213 |
2.75e-10 |
|
heme ABC exporter, ATP-binding protein CcmA; This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]
Pssm-ID: 273491 [Multi-domain] Cd Length: 198 Bit Score: 58.52 E-value: 2.75e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSfptRTGLVeAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKASAKER 84
Cdd:TIGR01189 1 LAARNLACS---RGERM-LFEGLSFTLNAgEALQVTGPNGIGKTTLLRILAGLLRPDS---------GEVRWNGTPLAEQ 67
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 RLMRGKRMAMILQDPkySLNPVMTIgrqiMETLRTHEKIGSSEarQRTL-AMLEAVQIRDPErvfDLFPHEVSGGMGQRV 163
Cdd:TIGR01189 68 RDEPHENILYLGHLP--GLKPELSA----LENLHFWAAIHGGA--QRTIeDALAAVGLTGFE---DLPAAQLSAGQQRRL 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVtvqlEVLDILDKLVRD---RGMGLIFVSH 213
Cdd:TIGR01189 137 ALARLWLSRRPLWILDEPTTALDK----AGVALLAGLLRAhlaRGGIVLLTTH 185
|
|
| ATM1 |
COG5265 |
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components ... |
13-236 |
4.04e-10 |
|
ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones];
Pssm-ID: 444078 [Multi-domain] Cd Length: 605 Bit Score: 59.83 E-value: 4.04e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 13 VSF---PTRTGLveavRGVSFTLG-RERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADtlrfG-DI-DLLKASakerr 85
Cdd:COG5265 363 VSFgydPERPIL----KGVSFEVPaGKTVAIVGPSGAGKSTLARLLFRFyDVTSGRILID----GqDIrDVTQAS----- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 lMRgKRMAMILQDPkyslnpVM---TIGRQImetlrTHEKIGSSEARQRTLAmlEAVQIRD-----P--------ERVFD 149
Cdd:COG5265 430 -LR-AAIGIVPQDT------VLfndTIAYNI-----AYGRPDASEEEVEAAA--RAAQIHDfieslPdgydtrvgERGLK 494
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 150 LfphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSfCDRVLVMY 229
Cdd:COG5265 495 L-----SGGEKQRVAIARTLLKNPPILIFDEATSALDSRTERAIQAALREVARGRTT--LVIAHRLSTIVD-ADEILVLE 566
|
....*..
gi 736475199 230 AGKVVEE 236
Cdd:COG5265 567 AGRIVER 573
|
|
| PRK09984 |
PRK09984 |
phosphonate ABC transporter ATP-binding protein; |
4-239 |
4.61e-10 |
|
phosphonate ABC transporter ATP-binding protein;
Pssm-ID: 182182 [Multi-domain] Cd Length: 262 Bit Score: 58.87 E-value: 4.61e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLtpknarIEADTLRFGDIDLL-KASA 81
Cdd:PRK09984 3 TIIRVEKLAKTFNQH----QALHAVDLNIHHgEMVALLGPSGSGKSTLLRHLSGL------ITGDKSAGSHIELLgRTVQ 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRLMRGKRMA-----MILQdpKYSLNPVMTIGRQIM-------ETLRTHEKIGSSEARQRTLAMLEAVQIRDpervfd 149
Cdd:PRK09984 73 REGRLARDIRKSrantgYIFQ--QFNLVNRLSVLENVLigalgstPFWRTCFSWFTREQKQRALQALTRVGMVH------ 144
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 150 lFPHE----VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRV 225
Cdd:PRK09984 145 -FAHQrvstLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERI 223
|
250
....*....|....
gi 736475199 226 LVMYAGKVVEELAS 239
Cdd:PRK09984 224 VALRQGHVFYDGSS 237
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
18-235 |
5.89e-10 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 59.60 E-value: 5.89e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 18 RTGLVEAVRGVSFTLG-RERLGIVGESGSGKSQTGRAIMGLTP-KNARI---EADTLRFGDIDLLKAsakerrlmrgkrM 92
Cdd:PLN03232 1245 RPGLPPVLHGLSFFVSpSEKVGVVGRTGAGKSSMLNALFRIVElEKGRImidDCDVAKFGLTDLRRV------------L 1312
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 93 AMILQdpkyslNPVMTIG--RQIMETLRTHEKIGSSEARQRtlAMLEAVQIRDPervFDLFPHEVSGG----MGQRVM-- 164
Cdd:PLN03232 1313 SIIPQ------SPVLFSGtvRFNIDPFSEHNDADLWEALER--AHIKDVIDRNP---FGLDAEVSEGGenfsVGQRQLls 1381
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 165 IAMMLVCGPELLIADEPTSALDVTVQlevlDILDKLVRD--RGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVE 235
Cdd:PLN03232 1382 LARALLRRSKILVLDEATASVDVRTD----SLIQRTIREefKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE 1449
|
|
| LptB |
COG1137 |
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope ... |
4-236 |
7.21e-10 |
|
ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis];
Pssm-ID: 440752 [Multi-domain] Cd Length: 240 Bit Score: 57.73 E-value: 7.21e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 4 SLLTVENLRVSFPTRTglveAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA-RIeadtlRFGDIDLLKASA 81
Cdd:COG1137 2 MTLEAENLVKSYGKRT----VVKDVSLEVNQgEIVGLLGPNGAGKTTTFYMIVGLVKPDSgRI-----FLDGEDITHLPM 72
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KER-RLmrGkrMAMILQDP----KyslnpvMTIGRQIMETLRTHeKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVS 156
Cdd:COG1137 73 HKRaRL--G--IGYLPQEAsifrK------LTVEDNILAVLELR-KLSKKEREERLEELLEEFGI---THLRKSKAYSLS 138
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 157 GGMGQRVMIAMMLVCGPELLIADEPTSALD-VTVQlEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:COG1137 139 GGERRRVEIARALATNPKFILLDEPFAGVDpIAVA-DIQKIIRHL-KERGIGVLITDHNVRETLGICDRAYIISEGKVLA 216
|
.
gi 736475199 236 E 236
Cdd:COG1137 217 E 217
|
|
| ABCG_PDR_domain1 |
cd03233 |
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette ... |
3-234 |
1.33e-09 |
|
First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters; The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Pssm-ID: 213200 [Multi-domain] Cd Length: 202 Bit Score: 56.50 E-value: 1.33e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 3 ASLLTVENLRVSFPTRTGLVEAVRGVSFTLGRERLGIV-GESGSGKSQTGRAIMGLTPKNARIEADtLRFGDIDLLKASA 81
Cdd:cd03233 1 ASTLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVlGRPGSGCSTLLKALANRTEGNVSVEGD-IHYNGIPYKEFAE 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRlmrgkRMAMILQDPkySLNPVMTIGrqimETLRThekigssearqrtlamleAVQIRDPERVfdlfpHEVSGGMGQ 161
Cdd:cd03233 80 KYPG-----EIIYVSEED--VHFPTLTVR----ETLDF------------------ALRCKGNEFV-----RGISGGERK 125
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMgLIFVS---HDLRLVSSFcDRVLVMYAGKVV 234
Cdd:cd03233 126 RVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKT-TTFVSlyqASDEIYDLF-DKVLVLYEGRQI 199
|
|
| PRK09700 |
PRK09700 |
D-allose ABC transporter ATP-binding protein AlsA; |
1-234 |
1.38e-09 |
|
D-allose ABC transporter ATP-binding protein AlsA;
Pssm-ID: 182036 [Multi-domain] Cd Length: 510 Bit Score: 58.26 E-value: 1.38e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFptrtGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGL-TPKNARIEADTLRFGDIDLlK 78
Cdd:PRK09700 1 MATPYISMAGIGKSF----GPVHALKSVNLTVyPGEIHALLGENGAGKSTLMKVLSGIhEPTKGTITINNINYNKLDH-K 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 79 ASAKerrlmrgKRMAMILQD----PKYSLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRdpeRVFDLFPHE 154
Cdd:PRK09700 76 LAAQ-------LGIGIIYQElsviDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK---VDLDEKVAN 145
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK09700 146 LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL-RKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV 224
|
|
| ABC2_perm_RbbA |
NF033858 |
ribosome-associated ATPase/putative transporter RbbA; |
24-247 |
2.23e-09 |
|
ribosome-associated ATPase/putative transporter RbbA;
Pssm-ID: 468210 [Multi-domain] Cd Length: 907 Bit Score: 57.83 E-value: 2.23e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSQTGRaiMgLTpknarieadtlrfGdidLLKASAKERRLMrGKRMamilqDPK-- 100
Cdd:NF033858 281 AVDHVSFRIRRgEIFGFLGSNGCGKSTTMK--M-LT-------------G---LLPASEGEAWLF-GQPV-----DAGdi 335
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 101 ------------YSLNPVMTIgRQimeTLRTHEK---IGSSEARQRTLAMLEAVQIRDperVFDLFPHEVSGGMGQRVMI 165
Cdd:NF033858 336 atrrrvgymsqaFSLYGELTV-RQ---NLELHARlfhLPAAEIAARVAEMLERFDLAD---VADALPDSLPLGIRQRLSL 408
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 166 AMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMgLIFVS-HdlrlvssF------CDRVLVMYAGKVveeLA 238
Cdd:NF033858 409 AVAVIHKPELLILDEPTSGVDPVARDMFWRLLIELSREDGV-TIFIStH-------FmneaerCDRISLMHAGRV---LA 477
|
250
....*....|..
gi 736475199 239 S---ANLKEAKH 247
Cdd:NF033858 478 SdtpAALVAARG 489
|
|
| cbiO |
PRK13638 |
energy-coupling factor ABC transporter ATP-binding protein; |
38-234 |
2.24e-09 |
|
energy-coupling factor ABC transporter ATP-binding protein;
Pssm-ID: 184198 [Multi-domain] Cd Length: 271 Bit Score: 56.94 E-value: 2.24e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 38 GIVGESGSGKSQTGRAIMGL-TPKNARI--EADTLRFGDIDLLKasakerrlMRgKRMAMILQDPKYSLNpVMTIGRQIM 114
Cdd:PRK13638 31 GLVGANGCGKSTLFMNLSGLlRPQKGAVlwQGKPLDYSKRGLLA--------LR-QQVATVFQDPEQQIF-YTDIDSDIA 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 115 ETLRThekIGSSEArQRTLAMLEAVQIRDPERvfdlFPHE----VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQ 190
Cdd:PRK13638 101 FSLRN---LGVPEA-EITRRVDEALTLVDAQH----FRHQpiqcLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGR 172
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 736475199 191 LEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK13638 173 TQMIAIIRRIVA-QGNHVIISSHDIDLIYEISDAVYVLRQGQIL 215
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
155-233 |
2.95e-09 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 57.05 E-value: 2.95e-09
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK10982 392 LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEMPELLGITDRILVMSNGLV 469
|
|
| PhnK |
COG1101 |
ABC-type uncharacterized transport system, ATPase component [General function prediction only]; ... |
6-238 |
3.44e-09 |
|
ABC-type uncharacterized transport system, ATPase component [General function prediction only];
Pssm-ID: 440718 [Multi-domain] Cd Length: 264 Bit Score: 56.25 E-value: 3.44e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTGL-VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRFGDIDLLKASAKE 83
Cdd:COG1101 2 LELKNLSKTFNPGTVNeKRALDGLNLTIEEgDFVTVIGSNGAGKSTLLNAIAGSLP----PDSGSILIDGKDVTKLPEYK 77
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RrlmrGKRMAMILQDPKYSLNPVMTI--------GRQIMETLR---THEKIGSSEARQRTLAM-LEAvqiRDPERVFDLf 151
Cdd:COG1101 78 R----AKYIGRVFQDPMMGTAPSMTIeenlalayRRGKRRGLRrglTKKRRELFRELLATLGLgLEN---RLDTKVGLL- 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 152 phevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:COG1101 150 ----SGGQRQALSLLMATLTKPKLLLLDEHTAALDPKTAALVLELTEKIVEENNLTTLMVTHNMEQALDYGNRLIMMHEG 225
|
....*..
gi 736475199 232 KVVEELA 238
Cdd:COG1101 226 RIILDVS 232
|
|
| PRK10790 |
PRK10790 |
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; |
24-251 |
4.71e-09 |
|
SmdB family multidrug efflux ABC transporter permease/ATP-binding protein;
Pssm-ID: 182733 [Multi-domain] Cd Length: 592 Bit Score: 56.65 E-value: 4.71e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGRERL---------------GIVGESGSGKSQTGRAIMGLTPknarieadtLRFGDIDLLK---ASAKERR 85
Cdd:PRK10790 342 DIDNVSFAYRDDNLvlqninlsvpsrgfvALVGHTGSGKSTLASLLMGYYP---------LTEGEIRLDGrplSSLSHSV 412
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 LMRGkrMAMILQDPKY---SLNPVMTIGRQIMEtlrthekigssearQRTLAMLEAVQIRDPERVFDLFPHEVSG----- 157
Cdd:PRK10790 413 LRQG--VAMVQQDPVVladTFLANVTLGRDISE--------------EQVWQALETVQLAELARSLPDGLYTPLGeqgnn 476
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 158 -GMGQRVMIAM--MLVCGPELLIADEPTSALDVTVQLEVLDILdKLVRDRGMgLIFVSHDLRLVSSfCDRVLVMYAGKVV 234
Cdd:PRK10790 477 lSVGQKQLLALarVLVQTPQILILDEATANIDSGTEQAIQQAL-AAVREHTT-LVVIAHRLSTIVE-ADTILVLHRGQAV 553
|
250
....*....|....*..
gi 736475199 235 EELASANLKEAKHPYTQ 251
Cdd:PRK10790 554 EQGTHQQLLAAQGRYWQ 570
|
|
| ABCC_cytochrome_bd |
cd03247 |
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome ... |
156-236 |
6.94e-09 |
|
ATP-binding cassette domain of CydCD, subfamily C; The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Pssm-ID: 213214 [Multi-domain] Cd Length: 178 Bit Score: 54.24 E-value: 6.94e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSFcDRVLVMYAGKVVE 235
Cdd:cd03247 100 SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK--TLIWITHHLTGIEHM-DKILFLENGKIIM 176
|
.
gi 736475199 236 E 236
Cdd:cd03247 177 Q 177
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
35-227 |
8.78e-09 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 55.95 E-value: 8.78e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGltpknaRIEADTlrfGDIDL-LKASAKerrlmrgkrmamilqdPKYsLNPvmTIGRQI 113
Cdd:COG1245 367 EVLGIVGPNGIGKTTFAKILAG------VLKPDE---GEVDEdLKISYK----------------PQY-ISP--DYDGTV 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 114 METLRTH--EKIGSSEARqrtlamleaVQIRDP---ERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVT 188
Cdd:COG1245 419 EEFLRSAntDDFGSSYYK---------TEIIKPlglEKLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 489
|
170 180 190
....*....|....*....|....*....|....*....
gi 736475199 189 VQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLV 227
Cdd:COG1245 490 QRLAVAKAIRRFAENRGKTAMVVDHDIYLIDYISDRLMV 528
|
|
| 3a01208 |
TIGR00958 |
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other] |
156-251 |
9.13e-09 |
|
Conjugate Transporter-2 (CT2) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273363 [Multi-domain] Cd Length: 711 Bit Score: 55.88 E-value: 9.13e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDilDKLVRDRGMGLIFvsHDLRLVSSfCDRVLVMYAGKVVE 235
Cdd:TIGR00958 619 SGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIA--HRLSTVER-ADQILVLKKGSVVE 693
|
90
....*....|....*.
gi 736475199 236 ELASANLKEAKHPYTQ 251
Cdd:TIGR00958 694 MGTHKQLMEDQGCYKH 709
|
|
| tagH |
PRK13545 |
teichoic acids export protein ATP-binding subunit; Provisional |
24-253 |
1.02e-08 |
|
teichoic acids export protein ATP-binding subunit; Provisional
Pssm-ID: 184130 [Multi-domain] Cd Length: 549 Bit Score: 55.67 E-value: 1.02e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLlKASAKERRLMRGkrmamilqdpkys 102
Cdd:PRK13545 39 ALNNISFEVPEgEIVGIIGLNGSGKSTLSNLIAGVTMPNK---------GTVDI-KGSAALIAISSG------------- 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 103 LNPVMTiGRQIMETLRTHEKIGSSEARQRTLAMLEAVQI----RDPERVFdlfphevSGGMGQRVMIAMMLVCGPELLIA 178
Cdd:PRK13545 96 LNGQLT-GIENIELKGLMMGLTKEKIKEIIPEIIEFADIgkfiYQPVKTY-------SSGMKSRLGFAISVHINPDILVI 167
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 179 DEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEelaSANLKEAKHPYTQGL 253
Cdd:PRK13545 168 DEALSVGDQTFTKKCLDKMNEF-KEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKE---YGDIKEVVDHYDEFL 238
|
|
| ABCC_TAP |
cd03248 |
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; ... |
9-233 |
1.12e-08 |
|
ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C; TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Pssm-ID: 213215 [Multi-domain] Cd Length: 226 Bit Score: 54.40 E-value: 1.12e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 9 ENLRVSFPTRTGlVEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGL-TPKNARIEadtlrfgdIDLLKASAKERRL 86
Cdd:cd03248 15 QNVTFAYPTRPD-TLVLQDVSFTLHPgEVTALVGPSGSGKSTVVALLENFyQPQGGQVL--------LDGKPISQYEHKY 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 87 MRGKrMAMILQDPKY---SLNPVMTIGRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFDLfphevSGGMGQRV 163
Cdd:cd03248 86 LHSK-VSLVGQEPVLfarSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQL-----SGGQKQRV 159
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 164 MIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIfvSHDLRLVSSfCDRVLVMYAGKV 233
Cdd:cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVI--AHRLSTVER-ADQILVLDGGRI 226
|
|
| GguA |
NF040905 |
sugar ABC transporter ATP-binding protein; |
22-237 |
3.05e-08 |
|
sugar ABC transporter ATP-binding protein;
Pssm-ID: 468840 [Multi-domain] Cd Length: 500 Bit Score: 54.03 E-value: 3.05e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 22 VEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNA-----RIEADTLRFGDIdllkaSAKERRlmrGkrMAMI 95
Cdd:NF040905 14 VKALDDVNLSVREgEIHALCGENGAGKSTLMKVLSGVYPHGSyegeiLFDGEVCRFKDI-----RDSEAL---G--IVII 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 96 LQDpkYSLNPVMTIGRQIM---ETLRtHEKIGSSEARQRTLAMLEAVQIRDP--ERVFDLfphevsgGMG--QRVMIAMM 168
Cdd:NF040905 84 HQE--LALIPYLSIAENIFlgnERAK-RGVIDWNETNRRARELLAKVGLDESpdTLVTDI-------GVGkqQLVEIAKA 153
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 169 LVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEEL 237
Cdd:NF040905 154 LSKDVKLLILDEPTAALNEEDSAALLDLLLEL-KAQGITSIIISHKLNEIRRVADSITVLRDGRTIETL 221
|
|
| livG |
PRK11300 |
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional |
1-232 |
3.10e-08 |
|
leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Pssm-ID: 183080 [Multi-domain] Cd Length: 255 Bit Score: 53.46 E-value: 3.10e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFptrTGLVeAVRGVSFTLG-RERLGIVGESGSGKSQT------------------GRAIMGLTP-K 60
Cdd:PRK11300 1 MSQPLLSVSGLMMRF---GGLL-AVNNVNLEVReQEIVSLIGPNGAGKTTVfncltgfykptggtillrGQHIEGLPGhQ 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 61 NARIeaDTLR-FGDIDLLKAS--------AKERRLMRGkRMAMILQDPKYslnpvmtigrqimetlRTHEKigssEARQR 131
Cdd:PRK11300 77 IARM--GVVRtFQHVRLFREMtvienllvAQHQQLKTG-LFSGLLKTPAF----------------RRAES----EALDR 133
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 132 TLAMLEAVQIRDpervfdlFPHEVSG----GMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMG 207
Cdd:PRK11300 134 AATWLERVGLLE-------HANRQAGnlayGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVT 206
|
250 260
....*....|....*....|....*
gi 736475199 208 LIFVSHDLRLVSSFCDRVLVMYAGK 232
Cdd:PRK11300 207 VLLIEHDMKLVMGISDRIYVVNQGT 231
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
154-234 |
3.70e-08 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 54.19 E-value: 3.70e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVtvqlEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDI----ETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKL 231
|
.
gi 736475199 234 V 234
Cdd:PRK11147 232 V 232
|
|
| PRK10247 |
PRK10247 |
putative ABC transporter ATP-binding protein YbbL; Provisional |
28-247 |
5.59e-08 |
|
putative ABC transporter ATP-binding protein YbbL; Provisional
Pssm-ID: 182331 [Multi-domain] Cd Length: 225 Bit Score: 52.02 E-value: 5.59e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 28 VSFTL--GRERLgIVGESGSGKSQTGRAIMGL-TPknariEADTLRFGDIDLLKASAKERRlmrgkrmamilQDPKYSLN 104
Cdd:PRK10247 26 ISFSLraGEFKL-ITGPSGCGKSTLLKIVASLiSP-----TSGTLLFEGEDISTLKPEIYR-----------QQVSYCAQ 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 105 PVMTIGRQIMETLRTHEKI-GSSEARQRTLAMLEAVQIrdPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTS 183
Cdd:PRK10247 89 TPTLFGDTVYDNLIFPWQIrNQQPDPAIFLDDLERFAL--PDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITS 166
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 184 ALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAgkvveelASANLKEAKH 247
Cdd:PRK10247 167 ALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINH-ADKVITLQP-------HAGEMQEARY 222
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
18-242 |
7.48e-08 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 53.20 E-value: 7.48e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 18 RTGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLT-PKNARI---EADTLRFGDIDLLKasakerrlmrgkRM 92
Cdd:PLN03130 1248 RPELPPVLHGLSFEIsPSEKVGIVGRTGAGKSSMLNALFRIVeLERGRIlidGCDISKFGLMDLRK------------VL 1315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 93 AMILQDP-------KYSLNPvmtigrqimetLRTHEKIGSSEARQRtlAMLEAVqIRDPERVFDLfphEVSGG-----MG 160
Cdd:PLN03130 1316 GIIPQAPvlfsgtvRFNLDP-----------FNEHNDADLWESLER--AHLKDV-IRRNSLGLDA---EVSEAgenfsVG 1378
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 161 QRVMI--AMMLVCGPELLIADEPTSALDVTVQLevldILDKLVRD--RGMGLIFVSHDLRLVSSfCDRVLVMYAGKVVEE 236
Cdd:PLN03130 1379 QRQLLslARALLRRSKILVLDEATAAVDVRTDA----LIQKTIREefKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEF 1453
|
....*.
gi 736475199 237 LASANL 242
Cdd:PLN03130 1454 DTPENL 1459
|
|
| ABC_CcmA_heme_exporter |
cd03231 |
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the ... |
27-187 |
1.02e-07 |
|
Cytochrome c biogenesis ATP-binding export protein; CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Pssm-ID: 213198 [Multi-domain] Cd Length: 201 Bit Score: 50.95 E-value: 1.02e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 27 GVSFTLGR-ERLGIVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLKASAKERRLMRGKRMAMILQDP--KYSL 103
Cdd:cd03231 18 GLSFTLAAgEALQVTGPNGSGKTTLLRILAGLSPPLA---------GRVLLNGGPLDFQRDSIARGLLYLGHAPgiKTTL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 104 NPVmtigrqimETLRTHEKIGSSEARQRTLAmleAVQIRDPErvfDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTS 183
Cdd:cd03231 89 SVL--------ENLRFWHADHSDEQVEEALA---RVGLNGFE---DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTT 154
|
....
gi 736475199 184 ALDV 187
Cdd:cd03231 155 ALDK 158
|
|
| hmuV |
PRK13547 |
heme ABC transporter ATP-binding protein; |
155-269 |
1.33e-07 |
|
heme ABC transporter ATP-binding protein;
Pssm-ID: 184132 [Multi-domain] Cd Length: 272 Bit Score: 51.37 E-value: 1.33e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMML---------VCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRV 225
Cdd:PRK13547 146 LSGGELARVQFARVLaqlwpphdaAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225
|
90 100 110 120
....*....|....*....|....*....|....*....|....*
gi 736475199 226 LVMYAGKVVEELASANLKEAKH-PYTQGLLNCLPQIGGHRHPLPV 269
Cdd:PRK13547 226 AMLADGAIVAHGAPADVLTPAHiARCYGFAVRLVDAGDGVPPVIV 270
|
|
| livF |
PRK11614 |
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; |
1-242 |
1.49e-07 |
|
high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF;
Pssm-ID: 183231 [Multi-domain] Cd Length: 237 Bit Score: 51.03 E-value: 1.49e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFptrtGLVEAVRGVSFTLGR-ERLGIVGESGSGKSqtgrAIMGLTPKNARIEADTLRFGDIDLlkA 79
Cdd:PRK11614 1 MEKVMLSFDKVSAHY----GKIQALHEVSLHINQgEIVTLIGANGAGKT----TLLGTLCGDPRATSGRIVFDGKDI--T 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERRLMRgKRMAMILQdpkyslnpvmtiGRQIMETLRTHEKIgsseARQRTLAMLEAVQIRdPERVFDLFP--HE--- 154
Cdd:PRK11614 71 DWQTAKIMR-EAVAIVPE------------GRRVFSRMTVEENL----AMGGFFAERDQFQER-IKWVYELFPrlHErri 132
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 -----VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMY 229
Cdd:PRK11614 133 qragtMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQL-REQGMTIFLVEQNANQALKLADRGYVLE 211
|
250
....*....|...
gi 736475199 230 AGKVVEELASANL 242
Cdd:PRK11614 212 NGHVVLEDTGDAL 224
|
|
| ABC_RNaseL_inhibitor_domain2 |
cd03237 |
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
25-227 |
1.51e-07 |
|
The ATP-binding cassette domain 2 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213204 [Multi-domain] Cd Length: 246 Bit Score: 51.25 E-value: 1.51e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 25 VRGVSFTLGrERLGIVGESGSGKSQTGRAIMG-LTPKNARIEadtlrfgdIDLLKASAKERRLmrgkrmamilqDPKYSl 103
Cdd:cd03237 17 VEGGSISES-EVIGILGPNGIGKTTFIKMLAGvLKPDEGDIE--------IELDTVSYKPQYI-----------KADYE- 75
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 104 npvMTIGRQIMETLRthekiGSSEARQRTLAMLEAVQIrdpERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTS 183
Cdd:cd03237 76 ---GTVRDLLSSITK-----DFYTHPYFKTEIAKPLQI---EQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSA 144
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 736475199 184 ALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLV 227
Cdd:cd03237 145 YLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIV 188
|
|
| PLN03211 |
PLN03211 |
ABC transporter G-25; Provisional |
35-232 |
1.95e-07 |
|
ABC transporter G-25; Provisional
Pssm-ID: 215634 [Multi-domain] Cd Length: 659 Bit Score: 51.80 E-value: 1.95e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGltpknaRIEADTLRfGDIdLLKASAKERRLMrgKRMAMILQDPkySLNPVMTIGRQIM 114
Cdd:PLN03211 95 EILAVLGPSGSGKSTLLNALAG------RIQGNNFT-GTI-LANNRKPTKQIL--KRTGFVTQDD--ILYPHLTVRETLV 162
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 115 --------ETLRTHEKIGSSEARQRTLAMLEAvqirDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALD 186
Cdd:PLN03211 163 fcsllrlpKSLTKQEKILVAESVISELGLTKC----ENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 736475199 187 VTVQLEVLDILDKLVRdRGMGLIFVSH--DLRLVSSFcDRVLVMYAGK 232
Cdd:PLN03211 239 ATAAYRLVLTLGSLAQ-KGKTIVTSMHqpSSRVYQMF-DSVLVLSEGR 284
|
|
| PRK03695 |
PRK03695 |
vitamin B12-transporter ATPase; Provisional |
35-234 |
3.21e-07 |
|
vitamin B12-transporter ATPase; Provisional
Pssm-ID: 235150 [Multi-domain] Cd Length: 248 Bit Score: 50.32 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMGLTPKNARIeadtlRFGDIDLLKASAKERRLMRGkrmAMILQDPKYSLNPVMTigrqiM 114
Cdd:PRK03695 23 EILHLVGPNGAGKSTLLARMAGLLPGSGSI-----QFAGQPLEAWSAAELARHRA---YLSQQQTPPFAMPVFQ-----Y 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 115 ETLRTHEKiGSSEARQRTLAML-EAVQIRD--PERVfdlfpHEVSGGMGQRVMIAMmlVC-------GPE--LLIADEPT 182
Cdd:PRK03695 90 LTLHQPDK-TRTEAVASALNEVaEALGLDDklGRSV-----NQLSGGEWQRVRLAA--VVlqvwpdiNPAgqLLLLDEPM 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 736475199 183 SALDVTvQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK03695 162 NSLDVA-QQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLL 212
|
|
| PRK14243 |
PRK14243 |
phosphate transporter ATP-binding protein; Provisional |
5-223 |
3.34e-07 |
|
phosphate transporter ATP-binding protein; Provisional
Pssm-ID: 184588 [Multi-domain] Cd Length: 264 Bit Score: 50.17 E-value: 3.34e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFptrtGLVEAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGLTP--KNARIEADTLrFGDIDLLKASA 81
Cdd:PRK14243 10 VLRTENLNVYY----GSFLAVKNVWLDIPKNQItAFIGPSGCGKSTILRCFNRLNDliPGFRVEGKVT-FHGKNLYAPDV 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 82 KERRLMRgkRMAMILQDPkyslNPvmtIGRQIMETLRTHEKIGS-----SEARQRTLAmlEAV---QIRDPERVFDLfph 153
Cdd:PRK14243 85 DPVEVRR--RIGMVFQKP----NP---FPKSIYDNIAYGARINGykgdmDELVERSLR--QAAlwdEVKDKLKQSGL--- 150
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrgMGLIFVSHDLRLVSSFCD 223
Cdd:PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQ--YTIIIVTHNMQQAARVSD 218
|
|
| PRK10762 |
PRK10762 |
D-ribose transporter ATP binding protein; Provisional |
154-244 |
3.97e-07 |
|
D-ribose transporter ATP binding protein; Provisional
Pssm-ID: 236755 [Multi-domain] Cd Length: 501 Bit Score: 50.77 E-value: 3.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK10762 141 ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIREL-KSQGRGIVYISHRLKEIFEICDDVTVFRDGQF 219
|
90
....*....|.
gi 736475199 234 VEELASANLKE 244
Cdd:PRK10762 220 IAEREVADLTE 230
|
|
| PRK15439 |
PRK15439 |
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional |
5-234 |
4.52e-07 |
|
autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Pssm-ID: 185336 [Multi-domain] Cd Length: 510 Bit Score: 50.43 E-value: 4.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFptrtGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLTPKNArieaDTLRFGDIDLLKAS-AK 82
Cdd:PRK15439 11 LLCARSISKQY----SGVEVLKGIDFTLhAGEVHALLGGNGAGKSTLMKIIAGIVPPDS----GTLEIGGNPCARLTpAK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLmrgkRMAMILQDPKysLNPVMTIGRQIMETLRTHEkigssEARQRTLAMLEAVQIRdpervFDLfphEVSGGM--- 159
Cdd:PRK15439 83 AHQL----GIYLVPQEPL--LFPNLSVKENILFGLPKRQ-----ASMQKMKQLLAALGCQ-----LDL---DSSAGSlev 143
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736475199 160 --GQRVMIAMMLVCGPELLIADEPTSALdVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK15439 144 adRQIVEILRGLMRDSRILILDEPTASL-TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA 219
|
|
| PRK11174 |
PRK11174 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
28-241 |
5.04e-07 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236870 [Multi-domain] Cd Length: 588 Bit Score: 50.61 E-value: 5.04e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 28 VSFTL-GRERLGIVGESGSGKSQTGRAIMGLTPKNARIEADTLRFGDIDLlkasAKERRlmrgkRMAMILQDPkyslnpv 106
Cdd:PRK11174 369 LNFTLpAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDP----ESWRK-----HLSWVGQNP------- 432
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 107 mtigrQIME-TLRTHEKIGSSEARQRTL-AMLEAVQIRDpervF-DLFPH-----------EVSGGMGQRVMIAMMLVCG 172
Cdd:PRK11174 433 -----QLPHgTLRDNVLLGNPDASDEQLqQALENAWVSE----FlPLLPQgldtpigdqaaGLSVGQAQRLALARALLQP 503
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 173 PELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSfCDRVLVMYAGKVVE-----ELASAN 241
Cdd:PRK11174 504 CQLLLLDEPTASLDAHSEQLVMQALNAASRRQ--TTLMVTHQLEDLAQ-WDQIWVMQDGQIVQqgdyaELSQAG 574
|
|
| MK0520 |
COG2401 |
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction ... |
39-236 |
7.03e-07 |
|
ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only];
Pssm-ID: 441957 [Multi-domain] Cd Length: 222 Bit Score: 48.80 E-value: 7.03e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGL---TPKNARIEADTLRFG-DIDLLKASAKerrlmrgkrmamiLQDPKyslnpvmtigrQIM 114
Cdd:COG2401 61 IVGASGSGKSTLLRLLAGAlkgTPVAGCVDVPDNQFGrEASLIDAIGR-------------KGDFK-----------DAV 116
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 115 ETLRThekIGSSEArqrtlamleaVQIRDPervfdlfPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVL 194
Cdd:COG2401 117 ELLNA---VGLSDA----------VLWLRR-------FKELSTGQKFRFRLALLLAERPKLLVIDEFCSHLDRQTAKRVA 176
|
170 180 190 200
....*....|....*....|....*....|....*....|...
gi 736475199 195 DILDKLVRDRGMGLIFVSHDLRLVSS-FCDRVLVMYAGKVVEE 236
Cdd:COG2401 177 RNLQKLARRAGITLVVATHHYDVIDDlQPDLLIFVGYGGVPEE 219
|
|
| ycf16 |
CHL00131 |
sulfate ABC transporter protein; Validated |
1-238 |
9.87e-07 |
|
sulfate ABC transporter protein; Validated
Pssm-ID: 214372 [Multi-domain] Cd Length: 252 Bit Score: 48.87 E-value: 9.87e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 1 MSASLLTVENLRVSFPTRtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGlTPKNARIEADTLrFGDIDLLKA 79
Cdd:CHL00131 3 KNKPILEIKNLHASVNEN----EILKGLNLSINKgEIHAIMGPNGSGKSTLSKVIAG-HPAYKILEGDIL-FKGESILDL 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 80 SAKERrlmrgKRMAMIL--QdpkyslNPVMTIGRQIMETLRThekIGSSEARQRTLAMLEAVQ----IRDPERVFDLFPH 153
Cdd:CHL00131 77 EPEER-----AHLGIFLafQ------YPIEIPGVSNADFLRL---AYNSKRKFQGLPELDPLEfleiINEKLKLVGMDPS 142
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EV--------SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFC-DR 224
Cdd:CHL00131 143 FLsrnvnegfSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL-MTSENSIILITHYQRLLDYIKpDY 221
|
250
....*....|....*...
gi 736475199 225 VLVMYAGKVVE----ELA 238
Cdd:CHL00131 222 VHVMQNGKIIKtgdaELA 239
|
|
| sufC |
PRK09580 |
cysteine desulfurase ATPase component; Reviewed |
5-235 |
9.97e-07 |
|
cysteine desulfurase ATPase component; Reviewed
Pssm-ID: 181965 [Multi-domain] Cd Length: 248 Bit Score: 48.63 E-value: 9.97e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 5 LLTVENLRVSFPTRtglvEAVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMGltPKNARIEADTLRFGDIDLLKASAKE 83
Cdd:PRK09580 1 MLSIKDLHVSVEDK----AILRGLNLEVRPgEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGKDLLELSPED 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 84 RRlmrGKRMAMILQDP------------KYSLNPVMTIGRQimETLRTHEKIGSSEARQRTLAMLEAVQIRDPERVFdlf 151
Cdd:PRK09580 75 RA---GEGIFMAFQYPveipgvsnqfflQTALNAVRSYRGQ--EPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGF--- 146
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 152 phevSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSF-CDRVLVMYA 230
Cdd:PRK09580 147 ----SGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSL-RDGKRSFIIVTHYQRILDYIkPDYVHVLYQ 221
|
....*
gi 736475199 231 GKVVE 235
Cdd:PRK09580 222 GRIVK 226
|
|
| PRK11160 |
PRK11160 |
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed |
156-235 |
1.16e-06 |
|
cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Pssm-ID: 236865 [Multi-domain] Cd Length: 574 Bit Score: 49.44 E-value: 1.16e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSFcDRVLVMYAGKVVE 235
Cdd:PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK--TVLMITHRLTGLEQF-DRICVMDNGQIIE 553
|
|
| PRK11176 |
PRK11176 |
lipid A ABC transporter ATP-binding protein/permease MsbA; |
156-251 |
1.69e-06 |
|
lipid A ABC transporter ATP-binding protein/permease MsbA;
Pssm-ID: 183016 [Multi-domain] Cd Length: 582 Bit Score: 48.86 E-value: 1.69e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIfvSHDLRLVSSfCDRVLVMYAGKVVE 235
Cdd:PRK11176 482 SGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVI--AHRLSTIEK-ADEILVVEDGEIVE 558
|
90
....*....|....*.
gi 736475199 236 ELASANLKEAKHPYTQ 251
Cdd:PRK11176 559 RGTHAELLAQNGVYAQ 574
|
|
| PRK13539 |
PRK13539 |
cytochrome c biogenesis protein CcmA; Provisional |
6-190 |
2.15e-06 |
|
cytochrome c biogenesis protein CcmA; Provisional
Pssm-ID: 237421 [Multi-domain] Cd Length: 207 Bit Score: 47.18 E-value: 2.15e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVsfpTRTGLVeAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMGLTPknarIEADTLRF--GDIDLLKASAK 82
Cdd:PRK13539 3 LEGEDLAC---VRGGRV-LFSGLSFTLaAGEALVLTGPNGSGKTTLLRLIAGLLP----PAAGTIKLdgGDIDDPDVAEA 74
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 ERRLmrGKRMAMilqdpkyslNPVMTIgrqiMETLRTHEKI-GSSEARqrTLAMLEAVQIRDperVFDLFPHEVSGGMGQ 161
Cdd:PRK13539 75 CHYL--GHRNAM---------KPALTV----AENLEFWAAFlGGEELD--IAAALEAVGLAP---LAHLPFGYLSAGQKR 134
|
170 180
....*....|....*....|....*....
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVTVQ 190
Cdd:PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAV 163
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
35-227 |
2.31e-06 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 48.65 E-value: 2.31e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 35 ERLGIVGESGSGKSQTGRAIMG-LTPKNARIEADtlrfgdidlLKASAKerrlmrgkrmamilqdPKY-SLNPVMTIGrq 112
Cdd:PRK13409 366 EVIGIVGPNGIGKTTFAKLLAGvLKPDEGEVDPE---------LKISYK----------------PQYiKPDYDGTVE-- 418
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 113 imETLRTH-EKIGSSearqrtlamLEAVQIRDPERVFDLFPHEV---SGGMGQRVMIAMMLVCGPELLIADEPTSALDVT 188
Cdd:PRK13409 419 --DLLRSItDDLGSS---------YYKSEIIKPLQLERLLDKNVkdlSGGELQRVAIAACLSRDADLYLLDEPSAHLDVE 487
|
170 180 190
....*....|....*....|....*....|....*....
gi 736475199 189 VQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLV 227
Cdd:PRK13409 488 QRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMV 526
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
18-246 |
2.74e-06 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 48.40 E-value: 2.74e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 18 RTGLVEAVRGVSFTL-GRERLGIVGESGSGKSQTgraIMGLTPKNARIEADtLRFGDIDLLKASAKERRLmrgkRMAMIL 96
Cdd:TIGR00957 1295 REDLDLVLRHINVTIhGGEKVGIVGRTGAGKSSL---TLGLFRINESAEGE-IIIDGLNIAKIGLHDLRF----KITIIP 1366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 97 QDpkyslnPVMTIGrqimeTLRTHEKIGSSEARQRTLAMLEAVQIRD-PERVFDLFPHEVSGG-----MGQR--VMIAMM 168
Cdd:TIGR00957 1367 QD------PVLFSG-----SLRMNLDPFSQYSDEEVWWALELAHLKTfVSALPDKLDHECAEGgenlsVGQRqlVCLARA 1435
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 169 LVCGPELLIADEPTSALDvtvqLEVLDILDKLVRDR--GMGLIFVSHDLRLVSSFCdRVLVMYAGKVVEELASANLKEAK 246
Cdd:TIGR00957 1436 LLRKTKILVLDEATAAVD----LETDNLIQSTIRTQfeDCTVLTIAHRLNTIMDYT-RVIVLDKGEVAEFGAPSNLLQQR 1510
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
6-234 |
5.81e-06 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 47.19 E-value: 5.81e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 6 LTVENLRVSFPTRTglveAVRGVSFTL-GRERLGIVGESGSGKSQTGRAIMG-LTPKNARIE-ADTLRFGdidllkasak 82
Cdd:PRK15064 320 LEVENLTKGFDNGP----LFKNLNLLLeAGERLAIIGENGVGKTTLLRTLVGeLEPDSGTVKwSENANIG---------- 385
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 83 errlmrgkRMAmilQDPKYSLNPVMTIgrqiMETLRTHEKIGSSEARQR-TLAML--EAVQIRDPERVfdlfpheVSGGM 159
Cdd:PRK15064 386 --------YYA---QDHAYDFENDLTL----FDWMSQWRQEGDDEQAVRgTLGRLlfSQDDIKKSVKV-------LSGGE 443
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 160 GQRVMIAMMLVCGPELLIADEPTSALDVTvQLEVLDI-LDKLvrdRGMgLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK15064 444 KGRMLFGKLMMQKPNVLVMDEPTNHMDME-SIESLNMaLEKY---EGT-LIFVSHDREFVSSLATRIIEITPDGVV 514
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
129-213 |
7.08e-06 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 46.93 E-value: 7.08e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 129 RQRTLAM--LEAVQIrdPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGM 206
Cdd:PRK10938 376 RQQKLAQqwLDILGI--DKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGET 453
|
....*..
gi 736475199 207 GLIFVSH 213
Cdd:PRK10938 454 QLLFVSH 460
|
|
| araG |
PRK11288 |
L-arabinose ABC transporter ATP-binding protein AraG; |
2-235 |
7.68e-06 |
|
L-arabinose ABC transporter ATP-binding protein AraG;
Pssm-ID: 183077 [Multi-domain] Cd Length: 501 Bit Score: 46.83 E-value: 7.68e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 2 SASLLTVENLRVSFPTrtglVEAVRGVSFTLGRERL-GIVGESGSGKSQTGRAIMGLTPKNA---RIEADTLRFGDI-DL 76
Cdd:PRK11288 1 SSPYLSFDGIGKTFPG----VKALDDISFDCRAGQVhALMGENGAGKSTLLKILSGNYQPDAgsiLIDGQEMRFASTtAA 76
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 77 LKASakerrlmrgkrMAMILQDpkYSLNPVMTIGRQIMetL-RTHEKIG---SSEARQRTLAMLEAVQIR-DPE-RVFDL 150
Cdd:PRK11288 77 LAAG-----------VAIIYQE--LHLVPEMTVAENLY--LgQLPHKGGivnRRLLNYEAREQLEHLGVDiDPDtPLKYL 141
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 151 fphevsgGMGQRVM--IAMMLVCGPELLIADEPTSALDVTvQLEVL-DILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLV 227
Cdd:PRK11288 142 -------SIGQRQMveIAKALARNARVIAFDEPTSSLSAR-EIEQLfRVIREL-RAEGRVILYVSHRMEEIFALCDAITV 212
|
....*...
gi 736475199 228 MYAGKVVE 235
Cdd:PRK11288 213 FKDGRYVA 220
|
|
| oligo_HPY |
pfam08352 |
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found ... |
234-271 |
1.20e-05 |
|
Oligopeptide/dipeptide transporter, C-terminal region; This family features a region found towards the C-terminus of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid.
Pssm-ID: 400588 [Multi-domain] Cd Length: 65 Bit Score: 42.39 E-value: 1.20e-05
10 20 30
....*....|....*....|....*....|....*....
gi 736475199 234 VEELASAN-LKEAKHPYTQGLLNCLPQIGGHRHPLPVLE 271
Cdd:pfam08352 1 VEEGPTDDiLENPLHPYTRALLNSVPRLDPPKRPLYTIP 39
|
|
| PRK13409 |
PRK13409 |
ribosome biogenesis/translation initiation ATPase RLI; |
154-229 |
1.64e-05 |
|
ribosome biogenesis/translation initiation ATPase RLI;
Pssm-ID: 184037 [Multi-domain] Cd Length: 590 Bit Score: 45.96 E-value: 1.64e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMglIFVSHDLRLVSSFCDRVLVMY 229
Cdd:PRK13409 212 ELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYV--LVVEHDLAVLDYLADNVHIAY 285
|
|
| ABCC_SUR1_N |
cd03290 |
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The ... |
39-231 |
1.71e-05 |
|
ATP-binding cassette domain of the sulfonylurea receptor, subfamily C; The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Pssm-ID: 213257 [Multi-domain] Cd Length: 218 Bit Score: 45.01 E-value: 1.71e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGltpKNARIEADTLRFGDIDLLKASAKERRLMRGKrMAMILQDPkYSLNPvmtigrqimeTLR 118
Cdd:cd03290 32 IVGQVGCGKSSLLLAILG---EMQTLEGKVHWSNKNESEPSFEATRSRNRYS-VAYAAQKP-WLLNA----------TVE 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 119 THEKIGSSEARQRTLAMLEAVQIRdPErvFDLFPH-----------EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDV 187
Cdd:cd03290 97 ENITFGSPFNKQRYKAVTDACSLQ-PD--IDLLPFgdqteigergiNLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*.
gi 736475199 188 TVQLEVLD--ILdKLVRDRGMGLIFVSHDLRLVSSfCDRVLVMYAG 231
Cdd:cd03290 174 HLSDHLMQegIL-KFLQDDKRTLVLVTHKLQYLPH-ADWIIAMKDG 217
|
|
| ABC_RNaseL_inhibitor_domain1 |
cd03236 |
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI) ... |
137-229 |
1.75e-05 |
|
The ATP-binding cassette domain 1 of RNase L inhibitor; The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213203 [Multi-domain] Cd Length: 255 Bit Score: 45.05 E-value: 1.75e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 137 EAVQIRDPERVFDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLR 216
Cdd:cd03236 122 ELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED-DNYVLVVEHDLA 200
|
90
....*....|...
gi 736475199 217 LVSSFCDRVLVMY 229
Cdd:cd03236 201 VLDYLSDYIHCLY 213
|
|
| ABC_UvrA |
cd03238 |
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in ... |
22-236 |
1.85e-05 |
|
ATP-binding cassette domain of the excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Pssm-ID: 213205 [Multi-domain] Cd Length: 176 Bit Score: 44.24 E-value: 1.85e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 22 VEAVRGVSFTLGRERL-GIVGESGSGKSqtgraimgltpknarieadTLRFgdiDLLKASAKERrlmrgkrmaMILQDPK 100
Cdd:cd03238 8 VHNLQNLDVSIPLNVLvVVTGVSGSGKS-------------------TLVN---EGLYASGKAR---------LISFLPK 56
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 101 YSLNPVMTIGRqimetLRTHEKIGSSEAR-QRTLAMLeavqirdpervfdlfphevSGGMGQRVMIAMMLVCGPE--LLI 177
Cdd:cd03238 57 FSRNKLIFIDQ-----LQFLIDVGLGYLTlGQKLSTL-------------------SGGELQRVKLASELFSEPPgtLFI 112
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 178 ADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSfCDRVLVM------YAGKVVEE 236
Cdd:cd03238 113 LDEPSTGLHQQDINQLLEVIKGL-IDLGNTVILIEHNLDVLSS-ADWIIDFgpgsgkSGGKVVFS 175
|
|
| ABC_RNaseL_inhibitor |
cd03222 |
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a ... |
154-229 |
2.65e-05 |
|
ATP-binding cassette domain of RNase L inhibitor; The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Pssm-ID: 213189 [Multi-domain] Cd Length: 177 Bit Score: 43.71 E-value: 2.65e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMY 229
Cdd:cd03222 71 DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFE 146
|
|
| PRK00635 |
PRK00635 |
excinuclease ABC subunit A; Provisional |
144-247 |
2.70e-05 |
|
excinuclease ABC subunit A; Provisional
Pssm-ID: 234806 [Multi-domain] Cd Length: 1809 Bit Score: 45.59 E-value: 2.70e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 144 PERVFDlfphEVSGGMGQRVMIAMMLvcGPELL----IADEPTSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVs 219
Cdd:PRK00635 470 PERALA----TLSGGEQERTALAKHL--GAELIgityILDEPSIGLHPQDTHKLINVIKKL-RDQGNTVLLVEHDEQMI- 541
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 736475199 220 SFCDRVL------------VMYAGKVVEELASANLKEAKH 247
Cdd:PRK00635 542 SLADRIIdigpgagifggeVLFNGSPREFLAKSDSLTAKY 581
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
156-231 |
4.59e-05 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 44.62 E-value: 4.59e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:TIGR01257 2072 SGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE-GRAVVLTSHSMEECEALCTRLAIMVKG 2146
|
|
| PRK10789 |
PRK10789 |
SmdA family multidrug ABC transporter permease/ATP-binding protein; |
24-235 |
5.57e-05 |
|
SmdA family multidrug ABC transporter permease/ATP-binding protein;
Pssm-ID: 182732 [Multi-domain] Cd Length: 569 Bit Score: 44.32 E-value: 5.57e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSqtgrAIMGLTPKNARIEADTLRFGDIDLLKASAKERRlmrgKRMAMILQDPKYS 102
Cdd:PRK10789 330 ALENVNFTLKPgQMLGICGPTGSGKS----TLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWR----SRLAVVSQTPFLF 401
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 103 LNPV---MTIGR------QIMETLR---THEKIgssearqrtLAMLEAVQIRDPERVFDLfphevSGGMGQRVMIAMMLV 170
Cdd:PRK10789 402 SDTVannIALGRpdatqqEIEHVARlasVHDDI---------LRLPQGYDTEVGERGVML-----SGGQKQRISIARALL 467
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736475199 171 CGPELLIADEPTSALDVTVQLEVLDILDKLVRDRgmGLIFVSHDLRLVSSfCDRVLVMYAGKVVE 235
Cdd:PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGEGR--TVIISAHRLSALTE-ASEILVMQHGHIAQ 529
|
|
| PRK13546 |
PRK13546 |
teichoic acids export ABC transporter ATP-binding subunit TagH; |
24-235 |
5.59e-05 |
|
teichoic acids export ABC transporter ATP-binding subunit TagH;
Pssm-ID: 184131 [Multi-domain] Cd Length: 264 Bit Score: 43.65 E-value: 5.59e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 24 AVRGVSFTLGR-ERLGIVGESGSGKSQTGRAIMG-LTPKNARIEadtlRFGDIDLLKASAKERRLMRGkrmamiLQDPKY 101
Cdd:PRK13546 39 ALDDISLKAYEgDVIGLVGINGSGKSTLSNIIGGsLSPTVGKVD----RNGEVSVIAISAGLSGQLTG------IENIEF 108
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 102 SLnPVMTIGRQIMETLrTHEKIGSSEARQRtlamleavqIRDPERVFdlfphevSGGMGQRVMIAMMLVCGPELLIADEP 181
Cdd:PRK13546 109 KM-LCMGFKRKEIKAM-TPKIIEFSELGEF---------IYQPVKKY-------SSGMRAKLGFSINITVNPDILVIDEA 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 736475199 182 TSALDVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVE 235
Cdd:PRK13546 171 LSVGDQTFAQKCLDKIYEF-KEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKD 223
|
|
| 40850658_otr |
NF000106 |
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit; |
110-243 |
6.14e-05 |
|
oxytetracycline efflux ABC transporter Otr(C) ATP-binding subunit;
Pssm-ID: 411078 [Multi-domain] Cd Length: 351 Bit Score: 43.96 E-value: 6.14e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 110 GRQIMETLRTHEKIGSSEARQRTLAMLEAVQIRDPErvfDLFPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTV 189
Cdd:NF000106 103 GRENLYMIGR*LDLSRKDARARADELLERFSLTEAA---GRAAAKYSGGMRRRLDLAASMIGRPAVLYLDEPTTGLDPRT 179
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 736475199 190 QLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMYAGKVVEELASANLK 243
Cdd:NF000106 180 RNEVWDEVRSMVRD-GATVLLTTQYMEEAEQLAHELTVIDRGRVIADGKVDELK 232
|
|
| PRK10982 |
PRK10982 |
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional |
39-234 |
6.20e-05 |
|
galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Pssm-ID: 182880 [Multi-domain] Cd Length: 491 Bit Score: 43.95 E-value: 6.20e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 39 IVGESGSGKSQTGRAIMGLTPKNArieadtlrfGDIDLLK-----ASAKERrLMRGkrMAMILQDpkysLNPVMTigRQI 113
Cdd:PRK10982 29 LMGENGAGKSTLLKCLFGIYQKDS---------GSILFQGkeidfKSSKEA-LENG--ISMVHQE----LNLVLQ--RSV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 114 METL---RTHEK---IGSSEARQRTLAMLEAVQIR-DP-ERVFDLfphevSGGMGQRVMIAMMLVCGPELLIADEPTSAL 185
Cdd:PRK10982 91 MDNMwlgRYPTKgmfVDQDKMYRDTKAIFDELDIDiDPrAKVATL-----SVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 736475199 186 DVTVQLEVLDILDKLvRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKVV 234
Cdd:PRK10982 166 TEKEVNHLFTIIRKL-KERGCGIVYISHKMEEIFQLCDEITILRDGQWI 213
|
|
| PRK11147 |
PRK11147 |
ABC transporter ATPase component; Reviewed |
156-214 |
6.44e-05 |
|
ABC transporter ATPase component; Reviewed
Pssm-ID: 236861 [Multi-domain] Cd Length: 635 Bit Score: 44.17 E-value: 6.44e-05
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVtvqlEVLDILDKLVRDRGMGLIFVSHD 214
Cdd:PRK11147 442 SGGERNRLLLARLFLKPSNLLILDEPTNDLDV----ETLELLEELLDSYQGTVLLVSHD 496
|
|
| PLN03130 |
PLN03130 |
ABC transporter C family member; Provisional |
155-236 |
8.66e-05 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215595 [Multi-domain] Cd Length: 1622 Bit Score: 43.96 E-value: 8.66e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVldiLDKLVRD--RGMGLIFVSHDLRLVSSfCDRVLVMYAGK 232
Cdd:PLN03130 741 ISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQV---FDKCIKDelRGKTRVLVTNQLHFLSQ-VDRIILVHEGM 816
|
....
gi 736475199 233 VVEE 236
Cdd:PLN03130 817 IKEE 820
|
|
| Rli1 |
COG1245 |
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ... |
154-229 |
8.69e-05 |
|
Translation initiation factor RLI1, contains Fe-S and AAA+ ATPase domains [Translation, ribosomal structure and biogenesis];
Pssm-ID: 440858 [Multi-domain] Cd Length: 592 Bit Score: 43.62 E-value: 8.69e-05
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRDrGMGLIFVSHDLRLVSSFCDRVLVMY 229
Cdd:COG1245 212 ELSGGELQRVAIAAALLRDADFYFFDEPSSYLDIYQRLNVARLIRELAEE-GKYVLVVEHDLAILDYLADYVHILY 286
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
9-218 |
1.24e-04 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 43.48 E-value: 1.24e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 9 ENLRVSFPTRTGlVEAVRGVSFTLGRER-LGIVGESGSGKSQTGRAIMGL-TPKNAR-IEADTLRFGDIDLlkasakerR 85
Cdd:PTZ00265 386 KNVRFHYDTRKD-VEIYKDLNFTLTEGKtYAFVGESGCGKSTILKLIERLyDPTEGDiIINDSHNLKDINL--------K 456
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 86 LMRGKrMAMILQDP-----------KYSL--------------------------------------NPVM--TIGRQIM 114
Cdd:PTZ00265 457 WWRSK-IGVVSQDPllfsnsiknniKYSLyslkdlealsnyynedgndsqenknkrnscrakcagdlNDMSntTDSNELI 535
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 115 ETLRTHEKIGSSEarqrTLAMLEAVQIRD-----PERVFDLF---PHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALD 186
Cdd:PTZ00265 536 EMRKNYQTIKDSE----VVDVSKKVLIHDfvsalPDKYETLVgsnASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
250 260 270
....*....|....*....|....*....|..
gi 736475199 187 VTVQLEVLDILDKLVRDRGMGLIFVSHDLRLV 218
Cdd:PTZ00265 612 NKSEYLVQKTINNLKGNENRITIIIAHRLSTI 643
|
|
| ABC_ABC_ChvD |
TIGR03719 |
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of ... |
8-225 |
1.37e-04 |
|
ATP-binding cassette protein, ChvD family; Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Pssm-ID: 274744 [Multi-domain] Cd Length: 552 Bit Score: 43.00 E-value: 1.37e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 8 VENLRVSFPTRTgLVEavrGVSFTLGRERL-GIVGESGSGKSQTGRAIMGL-TPKNARIE-ADTLRFGDIDllkasaker 84
Cdd:TIGR03719 325 AENLTKAFGDKL-LID---DLSFKLPPGGIvGVIGPNGAGKSTLFRMITGQeQPDSGTIEiGETVKLAYVD--------- 391
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 85 rlmrGKRMAMilqDPKYSLNPVMTIGRQIMetlrtheKIGSSEARQRtlAMLEAVQIRDPE---RVFDLfphevSGGMGQ 161
Cdd:TIGR03719 392 ----QSRDAL---DPNKTVWEEISGGLDII-------KLGKREIPSR--AYVGRFNFKGSDqqkKVGQL-----SGGERN 450
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 736475199 162 RVMIAMMLVCGPELLIADEPTSALDVtvqlEVLDILDKLVRDRGMGLIFVSHDlRLvssFCDRV 225
Cdd:TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDV----ETLRALEEALLNFAGCAVVISHD-RW---FLDRI 506
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
140-226 |
1.40e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.85 E-value: 1.40e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 140 QIRDPERVFdlfphevSGGMGQRVMIAMMLVCGPELLIADEPTSALDvtvqLEVLDILDKLVRDRGMGLIFVSHDLRLVS 219
Cdd:PRK10636 142 QLERPVSDF-------SGGWRMRLNLAQALICRSDLLLLDEPTNHLD----LDAVIWLEKWLKSYQGTLILISHDRDFLD 210
|
....*..
gi 736475199 220 SFCDRVL 226
Cdd:PRK10636 211 PIVDKII 217
|
|
| PRK10636 |
PRK10636 |
putative ABC transporter ATP-binding protein; Provisional |
156-233 |
1.85e-04 |
|
putative ABC transporter ATP-binding protein; Provisional
Pssm-ID: 236729 [Multi-domain] Cd Length: 638 Bit Score: 42.46 E-value: 1.85e-04
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDvtvqLEVLDILDKLVRDRGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:PRK10636 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLD----LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
|
|
| ABC_Rad50 |
cd03240 |
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ... |
131-218 |
2.41e-04 |
|
ATP-binding cassette domain of Rad50; The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Pssm-ID: 213207 [Multi-domain] Cd Length: 204 Bit Score: 41.05 E-value: 2.41e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 131 RTLAMLEAVQIRDPERVFDLFPHEV---SGGmgQRVMIAM-------MLVCGP-ELLIADEPTSALD---VTVQLevLDI 196
Cdd:cd03240 89 RSLAILENVIFCHQGESNWPLLDMRgrcSGG--EKVLASLiirlalaETFGSNcGILALDEPTTNLDeenIEESL--AEI 164
|
90 100
....*....|....*....|..
gi 736475199 197 LDKLVRDRGMGLIFVSHDLRLV 218
Cdd:cd03240 165 IEERKSQKNFQLIVITHDEELV 186
|
|
| oligo_HPY |
TIGR01727 |
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model ... |
232-274 |
2.58e-04 |
|
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; This model represents a domain found in the C-terminal regions of oligopeptide ABC transporter ATP binding proteins, immediately following the ATP-binding domain (pfam00005). All characterized members appear able to be involved in the transport of oligopeptides or dipeptides. Some are important for sporulation or antibiotic resistance. Some dipeptide transporters also act on the heme precursor delta-aminolevulinic acid. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 213647 [Multi-domain] Cd Length: 87 Bit Score: 38.88 E-value: 2.58e-04
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 736475199 232 KVVEElASAN--LKEAKHPYTQGLLNCLPQIGGHRHPLPVLERKP 274
Cdd:TIGR01727 1 KIVET-GPAEeiFKNPLHPYTKALLSAIPTIKKRDRKLISIPGEV 44
|
|
| PTZ00243 |
PTZ00243 |
ABC transporter; Provisional |
18-235 |
3.09e-04 |
|
ABC transporter; Provisional
Pssm-ID: 240327 [Multi-domain] Cd Length: 1560 Bit Score: 42.07 E-value: 3.09e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 18 RTGLVEAVRGVSFTLG-RERLGIVGESGSGKSQTGRAIM-------GLTPKNAR-IEADTLRfgdidllkasakERRlmr 88
Cdd:PTZ00243 1319 REGLPLVLRGVSFRIApREKVGIVGRTGSGKSTLLLTFMrmvevcgGEIRVNGReIGAYGLR------------ELR--- 1383
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 89 gKRMAMILQDpkyslnPVMTIGrqimeTLRTHEKIGSSEARQRTLAMLEAVQIRdpERVfdlfpHEVSGGM--------- 159
Cdd:PTZ00243 1384 -RQFSMIPQD------PVLFDG-----TVRQNVDPFLEASSAEVWAALELVGLR--ERV-----ASESEGIdsrvleggs 1444
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 160 ----GQRVMIAM---MLVCGPELLIADEPTS----ALDVTVQLEVLDILDKLVrdrgmgLIFVSHDLRLVSSfCDRVLVM 228
Cdd:PTZ00243 1445 nysvGQRQLMCMaraLLKKGSGFILMDEATAnidpALDRQIQATVMSAFSAYT------VITIAHRLHTVAQ-YDKIIVM 1517
|
....*..
gi 736475199 229 YAGKVVE 235
Cdd:PTZ00243 1518 DHGAVAE 1524
|
|
| PLN03073 |
PLN03073 |
ABC transporter F family; Provisional |
155-233 |
3.71e-04 |
|
ABC transporter F family; Provisional
Pssm-ID: 215558 [Multi-domain] Cd Length: 718 Bit Score: 41.77 E-value: 3.71e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDvtvqlevLDILDKLVRDRGM---GLIFVSHDLRLVSSFCDRVLVMYAG 231
Cdd:PLN03073 628 LSGGQKSRVAFAKITFKKPHILLLDEPSNHLD-------LDAVEALIQGLVLfqgGVLMVSHDEHLISGSVDELWVVSEG 700
|
..
gi 736475199 232 KV 233
Cdd:PLN03073 701 KV 702
|
|
| rim_protein |
TIGR01257 |
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim ... |
127-233 |
5.54e-04 |
|
retinal-specific rim ABC transporter; This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. [Transport and binding proteins, Other]
Pssm-ID: 130324 [Multi-domain] Cd Length: 2272 Bit Score: 41.54 E-value: 5.54e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 127 EARQRTLAMLEAVQI---RDPErvfdlfPHEVSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILdkLVRD 203
Cdd:TIGR01257 1037 EAQLEMEAMLEDTGLhhkRNEE------AQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLL--LKYR 1108
|
90 100 110
....*....|....*....|....*....|
gi 736475199 204 RGMGLIFVSHDLRLVSSFCDRVLVMYAGKV 233
Cdd:TIGR01257 1109 SGRTIIMSTHHMDEADLLGDRIAIISQGRL 1138
|
|
| 3a01205 |
TIGR00956 |
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other] |
155-234 |
6.93e-04 |
|
Pleiotropic Drug Resistance (PDR) Family protein; [Transport and binding proteins, Other]
Pssm-ID: 273362 [Multi-domain] Cd Length: 1394 Bit Score: 40.86 E-value: 6.93e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdrgmglifVSHDLRLVSSF-C--------DRV 225
Cdd:TIGR00956 210 VSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSAN--------ILDTTPLVAIYqCsqdayelfDKV 281
|
....*....
gi 736475199 226 LVMYAGKVV 234
Cdd:TIGR00956 282 IVLYEGYQI 290
|
|
| PLN03232 |
PLN03232 |
ABC transporter C family member; Provisional |
116-236 |
9.35e-04 |
|
ABC transporter C family member; Provisional
Pssm-ID: 215640 [Multi-domain] Cd Length: 1495 Bit Score: 40.73 E-value: 9.35e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 116 TLRTHEKIGSSEARQRTLAMLEAVQIrdpERVFDLFPHE-----------VSGGMGQRVMIAMMLVCGPELLIADEPTSA 184
Cdd:PLN03232 694 TVRENILFGSDFESERYWRAIDVTAL---QHDLDLLPGRdlteigergvnISGGQKQRVSMARAVYSNSDIYIFDDPLSA 770
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....
gi 736475199 185 LDVTVQLEVLD--ILDKLvrdRGMGLIFVSHDLRLVSSFcDRVLVMYAGKVVEE 236
Cdd:PLN03232 771 LDAHVAHQVFDscMKDEL---KGKTRVLVTNQLHFLPLM-DRIILVSEGMIKEE 820
|
|
| PTZ00265 |
PTZ00265 |
multidrug resistance protein (mdr1); Provisional |
155-199 |
1.24e-03 |
|
multidrug resistance protein (mdr1); Provisional
Pssm-ID: 240339 [Multi-domain] Cd Length: 1466 Bit Score: 40.40 E-value: 1.24e-03
10 20 30 40
....*....|....*....|....*....|....*....|....*....
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVT----VQLEVLDILDK 199
Cdd:PTZ00265 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNseklIEKTIVDIKDK 1407
|
|
| 3a01203 |
TIGR00954 |
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, ... |
154-213 |
1.86e-03 |
|
Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protein; [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]
Pssm-ID: 273360 [Multi-domain] Cd Length: 659 Bit Score: 39.35 E-value: 1.86e-03
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSAldvtVQLEVLDILDKLVRDRGMGLIFVSH 213
Cdd:TIGR00954 582 VLSGGEKQRIAMARLFYHKPQFAILDECTSA----VSVDVEGYMYRLCREFGITLFSVSH 637
|
|
| PRK15064 |
PRK15064 |
ABC transporter ATP-binding protein; Provisional |
154-222 |
2.21e-03 |
|
ABC transporter ATP-binding protein; Provisional
Pssm-ID: 237894 [Multi-domain] Cd Length: 530 Bit Score: 39.10 E-value: 2.21e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 154 EVSGGMGQRVMIAMMLVCGPELLIADEPTSALDV-TVQ-LEvlDILDKlvRDRGMglIFVSHDLRLVSSFC 222
Cdd:PRK15064 155 EVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDInTIRwLE--DVLNE--RNSTM--IIISHDRHFLNSVC 219
|
|
| PRK10938 |
PRK10938 |
putative molybdenum transport ATP-binding protein ModF; Provisional |
156-228 |
2.30e-03 |
|
putative molybdenum transport ATP-binding protein ModF; Provisional
Pssm-ID: 182852 [Multi-domain] Cd Length: 490 Bit Score: 39.23 E-value: 2.30e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 736475199 156 SGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEVLDILDKLVRdRGMGLIFVSHDLRLVSSFCDRVLVM 228
Cdd:PRK10938 137 STGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRFDEIPDFVQFAGVL 208
|
|
| MRP_assoc_pro |
TIGR00957 |
multi drug resistance-associated protein (MRP); This model describes multi drug ... |
155-235 |
6.90e-03 |
|
multi drug resistance-associated protein (MRP); This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. [Transport and binding proteins, Other]
Pssm-ID: 188098 [Multi-domain] Cd Length: 1522 Bit Score: 38.00 E-value: 6.90e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736475199 155 VSGGMGQRVMIAMMLVCGPELLIADEPTSALDVTVQLEvldILDKLVRDRGM----GLIFVSHDLRLVSSfCDRVLVMYA 230
Cdd:TIGR00957 761 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKH---IFEHVIGPEGVlknkTRILVTHGISYLPQ-VDVIIVMSG 836
|
....*
gi 736475199 231 GKVVE 235
Cdd:TIGR00957 837 GKISE 841
|
|
| uvra |
TIGR00630 |
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of ... |
156-220 |
9.44e-03 |
|
excinuclease ABC, A subunit; This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273184 [Multi-domain] Cd Length: 925 Bit Score: 37.30 E-value: 9.44e-03
10 20 30 40 50 60 70
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736475199 156 SGGMGQRVMIAMML---VCGPELLIADEPTSAL---DVTvQLevLDILDKLVrDRGMGLIFVSHDLRLVSS 220
Cdd:TIGR00630 831 SGGEAQRIKLAKELskrSTGRTLYILDEPTTGLhfdDIK-KL--LEVLQRLV-DKGNTVVVIEHNLDVIKT 897
|
|
| |
