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Conserved domains on  [gi|736476718|ref|WP_034498339|]
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MULTISPECIES: iron ABC transporter permease [Rhizobium/Agrobacterium group]

Protein Classification

FecCD family ABC transporter permease( domain architecture ID 10001816)

FecCD family ABC transporter permease such as iron ABC transporter permease, which is the transmembrane subunit (TM) found in a periplasmic binding protein (PBP)-dependent ATP-binding cassette (ABC) transporter involved in the import of iron and iron-containing compounds

CATH:  1.10.3470.10
Gene Ontology:  GO:0140359|GO:0042626
PubMed:  25750732|24638992
SCOP:  4002900
TCDB:  3.A.1

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-351 3.14e-91

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


:

Pssm-ID: 440374  Cd Length: 306  Bit Score: 275.41  E-value: 3.14e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  43 MALGPARYTLSEVLATIADPAAvGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASFGA 122
Cdd:COG0609    2 LSLGAVPISLSDVLRALLGPDG-DPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 123 alalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHF-ASTLRGVTVETIVLLGIALVFTFNAALSLLEYLASEQALAAVV 201
Cdd:COG0609   81 ----VLAIVLGGGLSALGLPLAAFLGALLAALLVYLlARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIV 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 202 FWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGF 281
Cdd:COG0609  157 FWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGF 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 282 VGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVPFFFALIFGNR 351
Cdd:COG0609  237 VGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-351 3.14e-91

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 275.41  E-value: 3.14e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  43 MALGPARYTLSEVLATIADPAAvGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASFGA 122
Cdd:COG0609    2 LSLGAVPISLSDVLRALLGPDG-DPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 123 alalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHF-ASTLRGVTVETIVLLGIALVFTFNAALSLLEYLASEQALAAVV 201
Cdd:COG0609   81 ----VLAIVLGGGLSALGLPLAAFLGALLAALLVYLlARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIV 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 202 FWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGF 281
Cdd:COG0609  157 FWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGF 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 282 VGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVPFFFALIFGNR 351
Cdd:COG0609  237 VGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 37-347 1.82e-65

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 209.69  E-value: 1.82e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718   37 FSMAADMALGPARYTLSEVLATIADPAavGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISA 116
Cdd:pfam01032   4 LLILLSLFIGAVKISPSDVFSALLGGD--DSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  117 AASFGAalalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHFASTLR-GVTVETIVLLGIALVFTFNAALSLLEYLASEQ 195
Cdd:pfam01032  82 GAALGA----VLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRgGASPLRLILAGIAVSALLSALTSLLLLLLNPE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  196 ALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSF 275
Cdd:pfam01032 158 ALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAV 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736476718  276 VGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVPFFFALI 347
Cdd:pfam01032 238 VGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLL 309
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 14-353 2.31e-44

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 155.50  E-value: 2.31e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  14 RDQYRALAARRIVILFGLFIALCfsmAADMALGPARYtlsevlatiadpaaVGNQLRVVIWDIRMPIALMAVTVGASLSV 93
Cdd:PRK03784  12 RRNRRWLLGLSVLLLLALLLSLC---AGEQWISPGDW--------------LSPRGELFVWQLRLPRTLAVLLVGAALAV 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  94 AGAQMQTILSNPLASPFTLGISAAASFGAALALVGGVAIFPGavhYMVPINAFIMAMVAALFIHFASTLRGVTVETIVLL 173
Cdd:PRK03784  75 SGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPP---WALSLCAIAGALLITLILLRFARRHRLSTSRLLLA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 174 GIALVFTFNAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAwALTALRLGDDKAASMGIN 253
Cdd:PRK03784 152 GVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPVLIWLCCQGR-PLNMLALGEISARQLGLP 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 254 VRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGV 333
Cdd:PRK03784 231 LWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGV 310

                        330       340
                 ....*....|....*....|
gi 736476718 334 ITALVGVPFFFALIFGNRRR 353
Cdd:PRK03784 311 VTATLGAPVFIWLLLRSHRA 330
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 82-347 1.10e-40

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 143.85  E-value: 1.10e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  82 LMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASFGAalalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHFAST 161
Cdd:cd06550    2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGV----VLALLLGIGLSNYALGAFAFAGALAIALLVLLLAS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 162 LRGVTVETIVLLGIALVFTFNAALSLLEYLASEQaLAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALR 241
Cdd:cd06550   78 RGGLSPSKLILIGIVLSAFFSAGVILISLLSDDS-LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 242 LGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISK 321
Cdd:cd06550  157 FDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR 236

                        250       260
                 ....*....|....*....|....*.
gi 736476718 322 ILIPgAVLPIGVITALVGVPFFFALI 347
Cdd:cd06550  237 TLLP-SELPVGPVTALLGAPYFLYLL 261
 
Name Accession Description Interval E-value
FepD COG0609
ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and ...
 43-351 3.14e-91

ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440374  Cd Length: 306  Bit Score: 275.41  E-value: 3.14e-91
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  43 MALGPARYTLSEVLATIADPAAvGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASFGA 122
Cdd:COG0609    2 LSLGAVPISLSDVLRALLGPDG-DPTADLIVWDLRLPRVLLALLVGAALAVAGALMQGLTRNPLADPGILGVSSGAALGA 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 123 alalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHF-ASTLRGVTVETIVLLGIALVFTFNAALSLLEYLASEQALAAVV 201
Cdd:COG0609   81 ----VLAIVLGGGLSALGLPLAAFLGALLAALLVYLlARRGGGLSPLRLVLAGVAVSALFSALTSLLLLLADPEQLRSIV 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 202 FWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGF 281
Cdd:COG0609  157 FWLMGSLAGASWDDVLLLLPVLLIGLLLALLLARALNALALGDETARSLGVNVERLRLLLLLLAALLTGAAVAVAGPIGF 236

                        250       260       270       280       290       300       310
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 282 VGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVPFFFALIFGNR 351
Cdd:COG0609  237 VGLVVPHIARLLVGPDHRRLLPASALLGALLLLLADTLARTILAPAELPVGIVTALIGAPFFLYLLRRRR 306
FecCD pfam01032
FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport ...
 37-347 1.82e-65

FecCD transport family; This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.


Pssm-ID: 426003  Cd Length: 311  Bit Score: 209.69  E-value: 1.82e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718   37 FSMAADMALGPARYTLSEVLATIADPAavGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISA 116
Cdd:pfam01032   4 LLILLSLFIGAVKISPSDVFSALLGGD--DSLAALIVLDLRLPRVLAALLVGAALAVSGALLQTVTRNPLADPSILGISS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  117 AASFGAalalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHFASTLR-GVTVETIVLLGIALVFTFNAALSLLEYLASEQ 195
Cdd:pfam01032  82 GAALGA----VLAILLGGSLSLFALPLAAFIGALLAALLVYFLSRGRgGASPLRLILAGIAVSALLSALTSLLLLLLNPE 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  196 ALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSF 275
Cdd:pfam01032 158 ALQSILFWLMGSLSGANWSDVLILLPLLLIGLILLLLLARKLNLLSLGDDTAKSLGVNVNRVRLLLLLLASLLTAASVAV 237

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736476718  276 VGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVPFFFALI 347
Cdd:pfam01032 238 VGPIGFVGLIVPHIARLLVGANHRRLLPLSALLGALLLLLADILARTILSPYELPVGIVTALIGAPFFIYLL 309
BtuC COG4139
ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and ...
 23-352 6.73e-52

ABC-type cobalamin transport system, permease component BtuC [Coenzyme transport and metabolism];


Pssm-ID: 443314  Cd Length: 327  Bit Score: 175.04  E-value: 6.73e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  23 RRIVILFGLFIALCFSMAADMALGPARYTLSEVLATIAdpaavgnqlRVVIWDIRMPIALMAVTVGASLSVAGAQMQTIL 102
Cdd:COG4139   10 RDRRWLLLLLLLLLLLFVLSLCAGEVWIPPTQWLSEAW---------QLFVWQLRLPRTLAAVLVGASLAVSGAVMQALF 80

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 103 SNPLASPFTLGISAAASFGAALALVGGVAIFPGavhYMVPINAFIMAM-VAALFIHFAStlRGVTVETIVLLGIALVFTF 181
Cdd:COG4139   81 ENPLAEPGLLGISNGAGVGLVLVVLLGGGLLPP---WLLSLAAIAGALlVTLLLLAFAR--RRLSNARLLLIGVALGIIC 155

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 182 NAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRnAWALTALRLGDDKAASMGINVRRLRLQT 261
Cdd:COG4139  156 SAIMTWAVYFSSSLDLRQLMYWMMGSFGGVDWRQLWLLLALLPVLLWLCLQ-GKPLNLLLLGENQARQLGLSVHRWRNLL 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 262 MLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVP 341
Cdd:COG4139  235 VLATGLLVGVSVALAGPIGFVGLVVPHLLRLLGTTDHRFLLPACALAGAALLLLADIIARLALSSAELPIGVVTATLGAP 314

                        330
                 ....*....|.
gi 736476718 342 FFFALIFGNRR 352
Cdd:COG4139  315 VFIWLLLRRRK 325
FepG COG4779
ABC-type enterobactin transport system, permease component [Inorganic ion transport and ...
 11-353 3.20e-51

ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 443810  Cd Length: 344  Bit Score: 173.77  E-value: 3.20e-51
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  11 VSGRDQYRALAARRIVILFGLFIALCFSMAADMALGPARYTLSEVLATIADPAAVGNQLrvVIWDIRMPIALMAVTVGAS 90
Cdd:COG4779    9 LRVGRVSLRLRRRALLVTLVLLLLLLALAVLALTLGDYPLSPGDVLRALLGEGDPGASF--VVLELRLPRALAALLVGAA 86

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  91 LSVAGAQMQTILSNPLASPFTLGISAAASFGAALALVGGvaifpGAVHYMVPINAFIMAMVAALFIHFASTLRGVTVETI 170
Cdd:COG4779   87 LGLSGAIFQSLTRNPLASPDIIGITAGASAGAVAAIVVL-----GGSGLAVALGALAGGLATALLVYLLAWRGGVSGYRL 161

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 171 VLLGIALVFTFNAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASM 250
Cdd:COG4779  162 ILVGIGVSAMLTAVNSYLLTRADLEDAQSAAVWLTGSLNGRTWEDVLPLAVALAVLLPLALALARRLRLLELGDDTAAAL 241

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 251 GINVRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDqRFFLPGSVICGALLLSATSVISKILIPGAVLP 330
Cdd:COG4779  242 GVRVERTRLLLLLVAVALAAVATAAAGPIAFVALAAPQIARRLTRSP-GPPLLPSALVGALLLLAADLVAQHLLAPVQLP 320

                        330       340
                 ....*....|....*....|...
gi 736476718 331 IGVITALVGVPFFFALIFGNRRR 353
Cdd:COG4779  321 VGVVTGALGGPYLLWLLIRENRR 343
PRK03784 PRK03784
vtamin B12-transporter permease; Provisional
 14-353 2.31e-44

vtamin B12-transporter permease; Provisional


Pssm-ID: 235159  Cd Length: 331  Bit Score: 155.50  E-value: 2.31e-44
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  14 RDQYRALAARRIVILFGLFIALCfsmAADMALGPARYtlsevlatiadpaaVGNQLRVVIWDIRMPIALMAVTVGASLSV 93
Cdd:PRK03784  12 RRNRRWLLGLSVLLLLALLLSLC---AGEQWISPGDW--------------LSPRGELFVWQLRLPRTLAVLLVGAALAV 74

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  94 AGAQMQTILSNPLASPFTLGISAAASFGAALALVGGVAIFPGavhYMVPINAFIMAMVAALFIHFASTLRGVTVETIVLL 173
Cdd:PRK03784  75 SGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPP---WALSLCAIAGALLITLILLRFARRHRLSTSRLLLA 151

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 174 GIALVFTFNAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAwALTALRLGDDKAASMGIN 253
Cdd:PRK03784 152 GVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPVLIWLCCQGR-PLNMLALGEISARQLGLP 230

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 254 VRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGV 333
Cdd:PRK03784 231 LWFWRNLLVLATGWLVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARLALASAELPIGV 310

                        330       340
                 ....*....|....*....|
gi 736476718 334 ITALVGVPFFFALIFGNRRR 353
Cdd:PRK03784 311 VTATLGAPVFIWLLLRSHRA 330
TM_ABC_iron-siderophores_like cd06550
Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding ...
 82-347 1.10e-40

Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal transporter, TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein of the E. coli ferrichrome transporter, FhuBC). FhuB contains two tandem TMs which associate to form the pseudo-heterodimer. Both FhuB TMs are found in this hierarchy.


Pssm-ID: 119348 [Multi-domain]  Cd Length: 261  Bit Score: 143.85  E-value: 1.10e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  82 LMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASFGAalalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHFAST 161
Cdd:cd06550    2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGV----VLALLLGIGLSNYALGAFAFAGALAIALLVLLLAS 77

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 162 LRGVTVETIVLLGIALVFTFNAALSLLEYLASEQaLAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALR 241
Cdd:cd06550   78 RGGLSPSKLILIGIVLSAFFSAGVILISLLSDDS-LQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLT 156

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 242 LGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISK 321
Cdd:cd06550  157 FDEDLAKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGLIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSR 236

                        250       260
                 ....*....|....*....|....*.
gi 736476718 322 ILIPgAVLPIGVITALVGVPFFFALI 347
Cdd:cd06550  237 TLLP-SELPVGPVTALLGAPYFLYLL 261
btuC PRK09535
cobalamin ABC transporter permease BtuC;
70-347 4.16e-40

cobalamin ABC transporter permease BtuC;


Pssm-ID: 236553  Cd Length: 366  Bit Score: 144.89  E-value: 4.16e-40
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  70 RVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASfgaalalVGGVA--IFPGAVHYMVPINAFI 147
Cdd:PRK09535  88 QTIVLQIRLPRILLAATVGFALAAAGTVMQGFFRNPMADPSIIGVSSGAA-------VGAVAaiVLPLAVPFGLQAAAFA 160

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 148 MAMVAALFIHFASTLRGVT-VETIVLLGIAlVFTFNAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVYVTAAILLVT 226
Cdd:PRK09535 161 GALVAAFGVYAIATENGRTpVATLLLAGVA-VQTFLGAVISYLLLHSGESLRRAVYWLMGHLHGSTWSDVEVALPVVVVG 239

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 227 VPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSV 306
Cdd:PRK09535 240 FVVLLAYARDLNVLLLGEEDAHTLGIEVERTKRLLLALASVVTAAAVAVAGVIGFVGLIVPHVMRLLVGPDHRILLPTSA 319

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|.
gi 736476718 307 ICGALLLSATSVISKilIPGAVLPIGVITALVGVPFFFALI 347
Cdd:PRK09535 320 LAGASFLVATDTVAR--SGPAEVPVGIVTAALGAPFFLYLL 358
fecD PRK09777
Fe(3+) dicitrate ABC transporter permease subunit FecD;
65-347 5.59e-39

Fe(3+) dicitrate ABC transporter permease subunit FecD;


Pssm-ID: 182071  Cd Length: 318  Bit Score: 140.95  E-value: 5.59e-39
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  65 VGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASFGAalalVGGVAIFPGAVHYMVPIN 144
Cdd:PRK09777  39 AGDEHYYVLMEYRLPRLLLALFVGAALAVSGVLVQGIVRNPLASPDILGVNHAASLAS----VGALLLFPSLPVMWLPLL 114

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 145 AFIMAMVAALFIH----FASTLRgvtvetIVLLGIALVFTFnAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVYVTA 220
Cdd:PRK09777 115 AFIGGMAGLILLKmlagTHQPMK------LALTGVALSALW-ASLTDYLMLSRPQDINNALLWLTGSLWGRDWSFVKVAL 187

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 221 AILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRF 300
Cdd:PRK09777 188 PWLILLLPLSLSFCRDLDLLALGDARATTLGVSVPHTQFWALLLAVALTATGVAACGPISFIGLVVPHLMRSLVGGRHRR 267

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*..
gi 736476718 301 FLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVPFFFALI 347
Cdd:PRK09777 268 LLPVSALTGALLLLLADLLARIIHPPLELPAGVLTAIIGAPWFFWLL 314
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
18-353 4.11e-38

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 144.21  E-value: 4.11e-38
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  18 RALAARRIVILFGLFIALCFSMAADMALGPARytlsevlaTIADPAAVGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQ 97
Cdd:PRK10577 346 RVAARRRRVLAWLLALGLLLLLALVVALSFGR--------DAHGWNWLSGQLLDALLPLRLPRLLAALLAGAMLAVAGTL 417

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  98 MQTILSNPLASPFTLGISAAASFGAalalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHFASTLRGVTVETIVLLGIAL 177
Cdd:PRK10577 418 LQRLTRNPLASPEVLGISSGAGLGV----VLALFLVPGAGFGWLLAAALLGALAALALILLLARRGGFAPERLLLTGIAL 493

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 178 VFTFNAALSLLEYLASEQALAAVVfWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRL 257
Cdd:PRK10577 494 SALFTALIQLLLASGDPRAAQLLT-WLSGSTYGVTWAQALPLLIVAVLLLALALLLRRWLDLLPLGDDTARALGLPVTRA 572

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 258 RLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITAL 337
Cdd:PRK10577 573 RLALLLLAALLTAAATATVGPLSFVGLMAPHLARMLGGRRARPQLVLAALLGALLMVLADWLGRTLLFPYQIPAGLLAAL 652

                        330
                 ....*....|....*.
gi 736476718 338 VGVPFFFALIFGNRRR 353
Cdd:PRK10577 653 IGAPYFLWLLRRSRRR 668
PRK10577 PRK10577
Fe(3+)-hydroxamate ABC transporter permease FhuB;
21-354 2.89e-36

Fe(3+)-hydroxamate ABC transporter permease FhuB;


Pssm-ID: 236720 [Multi-domain]  Cd Length: 668  Bit Score: 138.82  E-value: 2.89e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  21 AARRIVILFGLFIALCFSMAADMALGPARYTLSEVLATIADPAAVGNQlRVVIWDIRMPIALMAVTVGASLSVAGAQMQT 100
Cdd:PRK10577   7 RRRARLPALLLALLLLLALALTLTQLSAALPLSQWLQALWGPDADDLE-QLLLHYSRLPRLAIALLVGAALGLAGALLQQ 85

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 101 ILSNPLASPFTLGISA---AASFGAALALVGGVAIFPGAVhymvpinAFIMAMVAALFIHFASTLRGVTVETIVLLGIAL 177
Cdd:PRK10577  86 VLRNPLASPTTLGVAAgaqLALVLATLFAPALLALASQLA-------AFAGGLLAAALVFALAGGKRLSPLRLVLAGMVV 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 178 VFTFNAALSLLeYLASEQALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRL 257
Cdd:PRK10577 159 SLYLGALTTLL-LLFNEQYLQGLFLWGAGSLAQNDWSGVQRLLPRLLVGLLLLLLLARPLTLLGLGDDVARSLGLAVSLT 237

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 258 RLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIP--GAVLPIGVIT 335
Cdd:PRK10577 238 RLAALALAVLLSAAVVSAVGPIGFIGLAAPNLARLLGARRLRARLPLSPLIGALLLLLTDQLVRLLAGvgGELLPTGAVT 317

                        330
                 ....*....|....*....
gi 736476718 336 ALVGVPFFFALIFGNRRRA 354
Cdd:PRK10577 318 ALIGAPLLLWLLPRLRSAQ 336
fecC PRK11228
iron-dicitrate ABC transporter permease FecC;
62-343 4.40e-34

iron-dicitrate ABC transporter permease FecC;


Pssm-ID: 183042  Cd Length: 323  Bit Score: 127.89  E-value: 4.40e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  62 PAAVGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQTILSNPLASPFTLGISAAASFGAALALVGGVAIFPG-AVHYM 140
Cdd:PRK11228  36 PGHTPTLPEALVQNLRLPRSLVAVLIGASLALAGALLQTLTHNPLASPSLLGINSGAALAMALTSALSPTPFAGySLAFI 115

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 141 VPIN---AFIMAMVAALFIHfASTLRGvtveTIVLLGIAlVFTFNAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVY 217
Cdd:PRK11228 116 AACGgglSWLLVMTAGGGWR-HTHDRN----RLILAGIA-LSALCMALTRITLLLAEDHAYGIFYWLAGGVSHARWQEVW 189

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 218 VTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGED 297
Cdd:PRK11228 190 QLLPFVVTAVPVVLLLANQLNLLNLSDSSAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGLLVPHLARFWIGYD 269

                        250       260       270       280
                 ....*....|....*....|....*....|....*....|....*.
gi 736476718 298 QRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVPFF 343
Cdd:PRK11228 270 QRNVLPMSMLLGATLMLLADLLARALAFPGELPAGAVLALIGAPCF 315
PRK10441 PRK10441
Fe(3+)-siderophore ABC transporter permease;
20-353 7.38e-29

Fe(3+)-siderophore ABC transporter permease;


Pssm-ID: 182464  Cd Length: 335  Bit Score: 114.03  E-value: 7.38e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  20 LAARRIVILFGLFIALCFSMAADMALGPARYTLSEVLATIAdpAAVGNQLRVVIWDIRMPIALMAVTVGASLSVAGAQMQ 99
Cdd:PRK10441   5 VAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEALS--GTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQ 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 100 TILSNPLASPFTLGISAAASFGAalalVGGVAIFPGAVHYMVPINAFIMAMVAALFIHFASTLRGVTVET--IVLLGIAL 177
Cdd:PRK10441  83 TLTRNPLADPGLLGVNAGASFAI----VLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPvrLTLAGVAL 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 178 ---VFTFNAALSLLEYLASEQalaaVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINV 254
Cdd:PRK10441 159 aavLEGLTSGIALLNPDVYDQ----LRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSLSLGSDTATALGSRV 234

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 255 RRLRLQTMLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEDQRFFLPGSVICGALLLSATSVISKILIPGAvLPIGVI 334
Cdd:PRK10441 235 ARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGADHRWSLPVTLLATPALLLFADIIGRLLVPGE-LRVSVV 313

                        330
                 ....*....|....*....
gi 736476718 335 TALVGVPfffALIFGNRRR 353
Cdd:PRK10441 314 SAFIGAP---VLIFLVRRK 329
PRK10440 PRK10440
iron-enterobactin ABC transporter permease;
23-354 8.94e-26

iron-enterobactin ABC transporter permease;


Pssm-ID: 182463  Cd Length: 330  Bit Score: 105.56  E-value: 8.94e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718  23 RRIVILFGLFIALCFSMA-ADMALGPARYTLSEVLATIADPAAVGNQLRVVIWdiRMPIALMAVTVGASLSVAGAQMQTI 101
Cdd:PRK10440   6 RRLLITCLLLLAACVAAGlWGLRSGAVTLETSQVFAALMGDAPRSMTMVVTEW--RLPRVLMALLIGAALGVSGAIFQSL 83

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 102 LSNPLASPFTLGISAAASFGAALALVggvaiFPGAVHYMVPINAFIMAMVAALFIHFASTLRGVTVETIVLLGIALVFTF 181
Cdd:PRK10440  84 MRNPLGSPDVMGFNTGAWSGVLVAMV-----LFGQDLTAIALAAMAGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAML 158

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 182 NAALSLLEYLASEQALAAVVFWTMGSLTKATWDKVYVTAAILLVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQT 261
Cdd:PRK10440 159 VAFNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEMGDDTACALGVSVERSRLLL 238

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 262 MLTVSLLAAIPVSFVGTIGFVGLVGPHIARMLVGEdQRFFLPGSVICGALLLSATSVISKILIPGAVLPIGVITALVGVP 341
Cdd:PRK10440 239 MLVAVVLTAAATALAGPISFIALVAPHIARRLSGT-ARWGLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGI 317

                        330
                 ....*....|...
gi 736476718 342 FFFALIFGNRRRA 354
Cdd:PRK10440 318 YLIVLLIQESRKK 330
ZnuB COG1108
ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and ...
 145-352 4.90e-04

ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism];


Pssm-ID: 440725  Cd Length: 260  Bit Score: 41.19  E-value: 4.90e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 145 AFIMAMVAALFIHFASTLRGVTVETIvlLGIALVFTFNAALSLLEYLASEQA-LAAVVFwtmGSLTKATWDKVYVTAAIL 223
Cdd:COG1108   59 ALVAGLLAALLIGLLRRRSRLKEDTA--IGIVFSGGFALGVLLISLVPGSAVdLMSYLF---GSILAVSRSDLLLLAVLA 133

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736476718 224 LVTVPMFMRNAWALTALRLGDDKAASMGINVRRLRLQTMLTVSLLAAIPVSFVGTIGFVGL-VGPHIARMLVGEDqrffl 302
Cdd:COG1108  134 AVVLLLLLLFYRELLLVSFDPELARASGLPVRLLHLLLLVLLALTVVAALQAVGALLVSALlIIPAATARLLTRS----- 208

                        170       180       190       200       210
                 ....*....|....*....|....*....|....*....|....*....|..
gi 736476718 303 PGSVICGALLLSATSVISKILIPGAV-LPIG-VITALVGVPFFFALIFGNRR 352
Cdd:COG1108  209 LRRMLLLAVLIGVLSSVLGLYLSYYLdLPTGpTIVLVAGLLFLLSLLFSPRR 260
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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