|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
1-1099 |
0e+00 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 2079.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 1 MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKWARSLIADRSVSGASEAFW 80
Cdd:PRK13826 1 MAIPHFSVSIVSRGSGRSAVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFVLPADAPEWVRSMIADRSVSGASEAFW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 81 NNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGSK 160
Cdd:PRK13826 81 NKVEAFEKRSDAQLAKDVTIALPLELTAEQNIALVRDFVEKHILAKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 161 KVAIISDDGQPVRTKSGKILYELWAGSTDDFNMLRDGWFERLNHHLALGGIDLRVDGRSYEKQGIDLEPTIHLGVRAKAI 240
Cdd:PRK13826 161 KVAVIGEDGQPVRTDAGKIVYELWAGSTDDFNALRDGWFACQNHHLALAGLDLRIDGRSYEKQGIELEPTIHLGVGAKAI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 241 ERKAERQGVRPELERIELNERRRTENARRILKNPAIVLDLITREKSVFNERDVAKVLYRYIDDPAVFQQLMIRIILNPDV 320
Cdd:PRK13826 241 ERKAEQQGVRPELERIELQEERRSENARRIQRRPEIVLDLITREKSVFDERDVAKVLHRYVDDPAVFQSLMARILQSPEV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 321 LRLERDTIDFATGEKLPARYSTRAMIRLEATMARQAMWLSAKKAHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARIA 400
Cdd:PRK13826 321 LRLERERIDFATGIRVPARYTTRAMIRLEAEMARRAIWLSGRSSHGVREAVLAATFARHARLSDEQKTAIEHVAGPARIA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 401 AVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWERGRDVLDDKTTFVMDEAGMV 480
Cdd:PRK13826 401 AVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 481 ASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDRIGYAELETIYRQRDDWMRKASLDLARGNVEKALVAYE 560
Cdd:PRK13826 481 ASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREQWMRDASLDLARGNVGKALDAYR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 561 GQGRVLGSRLKFEAVERLIADWNRDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHVFKTADGERRFDVGDQI 640
Cdd:PRK13826 561 ANGRVIGSRLKAEAVESLIADWNRDYDPTKTTLILAHLRRDVRMLNEMARAKLVERGIVGEGHAFRTADGERRFAAGDQI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 641 VFLKNEGSLGVKNGMIGHVVEAQPNRIVALVGERDHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSMDRH 720
Cdd:PRK13826 641 VFLKNEGSLGVKNGMIGKVVEAAPNRIVAEIGEGEHRRQVTVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRH 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 721 LTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLEYERGQLYREALRFAETRGLHIVQVARTLVRDRLDWTL 800
Cdd:PRK13826 721 LTYVAMTRHREDLQLYYGRRSFAFNGGLIPVLSRRNAKETTLDYERGKLYRQALRFAENRGLHLVNVARTLARDRLDWTL 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 801 RQKAKLVDLGQRLSAFAARLGFTESPDTQTM---KEAAPMVAGIKTFSGTVADTVGDKLGEDPGLKRQWEEVSARFRYVF 877
Cdd:PRK13826 801 RQKQKLADLGARLRAIGERLGLAQSPKTQTMqnsKEAAPMVAGITTFPKSVADTVEDKLAADPALKKQWEEVSTRFHLVY 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 878 ADPETAFRAMNFDVVIADKDAARQTLETLETNAASIGPLKGKSGILASKAEREARSVAEVNVPALKRDLDKYLRMREAAA 957
Cdd:PRK13826 881 ADPETAFKAVNFDAMLKDKEVAKSTLQKLAAEPESFGALKGKTGILASKADRQDRERAEVNVPALKRDLERYLRMREEAE 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 958 QHIAADEQALRHQVSIDIPALSPAARVVLERVRDAIDRNDLPAAMAYALSNRETKLEIDGFNRAVTERFGERTLLSNAAQ 1037
Cdd:PRK13826 961 RKHEAEERALRQRVSIDIPALSPAARQVLERVRDAIDRNDLPAALEYALADRMVKAEIDGFNKAVTERFGERTFLPNAAR 1040
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736477730 1038 EPSGALYEKLSEGMKPEQKEQLKQAWPVMRTAQQLAAHERTVQSLRQAEEHRLMQRQTPVLK 1099
Cdd:PRK13826 1041 EPSGKTFEKVTAGMTPGQKEELKSAWPVMRTAQQLAAHERTTEALKQAETLRQTQSQGLSLK 1102
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
1-781 |
0e+00 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 1080.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 1 MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKwarsliadrSVSgASEAFW 80
Cdd:TIGR02768 1 MAIYHLSASIISRSSGRSAVAAAAYRSAARLVDERIGRVFDFTRKDGVAHSEIVLPDGAPD---------SFL-ERAALW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 81 NNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYH-DNPGNPHIHLMTTLRPLTEDGFGS 159
Cdd:TIGR02768 71 NAVEAAEKRKDAQLAREFEIALPRELNLEQNIELARRFVRDHFVEKGMVADWAIHdDGDGNPHAHLLTTTRPLEENGFGA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 160 KKVAIISDDGQPvrtksgkilYELWAGSTDDFNMLRDGWFERLNHHLALGGIDLRVDGRSYEKQGIDLEPTIHLGVRAKA 239
Cdd:TIGR02768 151 KKVRVLGEDGQP---------YEFWAGSKEDLDYWREQWAELANEHLAEAGLDLRIDHRSYAEQGIDLIPTKHIGVHAKA 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 240 IERKAErqgvrpELERIELNERRRTENARRILKNPAIVLDLITREKSVFNERDVAKVLYRYIDDPAVFQQLMIRIILNPD 319
Cdd:TIGR02768 222 MERRGE------AAERLPENLAIRQENAERILDNPELVLDLLTTEQSVFTRRDIARLLHRYIDDPQQFQQLMARVLASPQ 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 320 VLRLErdtiDFATGeKLPARYSTRAMIRLEATMARQAMWLSAKKAHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARI 399
Cdd:TIGR02768 296 LVALG----DPGTG-KEPARFSTREMIRLEAQMARSAEALSQSQGHGVSPPIVDAAIDQHYRLSEEQYEAVRHVTGSGDI 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 400 AAVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWERGRDVLDDKTTFVMDEAGM 479
Cdd:TIGR02768 371 AVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGM 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 480 VASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDRIGYAELETIYRQRDDWMRKASLDLARGNVEKALVAY 559
Cdd:TIGR02768 451 VGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAGAAFRAIAERIGYAELETIRRQREAWARQASLELARGDVEKALAAY 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 560 EGQGRVLGSRLKFEAVERLIADWN---RDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHVFKTADGERRFDV 636
Cdd:TIGR02768 531 RDHGHITIHDTREEAIEQVVADWKqdlREANPAGSQIMLAHTRKDVRALNEAAREALIERGELGESILFQTARGERKFAA 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 637 GDQIVFLKNEGSLGVKNGMIGHVVEAQPNRIVALVgerDHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLS 716
Cdd:TIGR02768 611 GDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQL---DSGELVIIPQAEYDALDHGYATTIHKSQGVTVDRAFVLASKS 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736477730 717 MDRHLTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLEYERGqlyrealrFAETRG 781
Cdd:TIGR02768 688 MDRHLAYVAMTRHRESVQLYAGKEDFTDRGALVKTLSRSSTKDTTLDYPHD--------FAIRRG 744
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
267-764 |
4.68e-106 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 341.96 E-value: 4.68e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 267 ARRILKNPAI----VLDLITREKSVFNERDVAkvLYRYIDDPAVFQQLMIRIILNPDvLRLERDtidfatgeklpaRYST 342
Cdd:COG0507 20 ADFIARDDPIraaaLLSRAAGEGHTFPLEDLA--AARLLGVAEDIEAALAALVESGP-LVLDGR------------RYLT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 343 RaMIRLEATMARQAMWLSAKK--AHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAASEA 420
Cdd:COG0507 85 R-LLEAEQRLARRLRRLARPAldEADVEAALAALEPRAGITLSDEQREAVALALTTRRVSVLTGGAGTGKTTTLRALLAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 421 WELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASW-ELRWERGR------DVLDDKTTFVMDEAGMVASKQMAGFVDSVV 493
Cdd:COG0507 164 LEALGLRVALAAPTGKAAKRLSESTGIEARTIHRLlGLRPDSGRfrhnrdNPLTPADLLVVDEASMVDTRLMAALLEALP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 494 RTGAKIVLVGDPEQLQPIEAGAAFRVIVDR--IGYAELETIYRQRDDWMRKA-SLDLARGNVEKALVAYEGQGRVLGSRL 570
Cdd:COG0507 244 RAGARLILVGDPDQLPSVGAGAVLRDLIESgtVPVVELTEVYRQADDSRIIElAHAIREGDAPEALNARYADVVFVEAED 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 571 KFEAVERLIADWNRDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHvfkTADGERRFDVGDQIVFLKNEGSLG 650
Cdd:COG0507 324 AEEAAEAIVELYADRPAGGEDIQVLAPTNAGVDALNQAIREALNPAGELEREL---AEDGELELYVGDRVMFTRNDYDLG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 651 VKNGMIGHVVEAQPNRIVALVgERDHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLA----SLSMDRHLTYVAM 726
Cdd:COG0507 401 VFNGDIGTVLSIDEDEGRLTV-RFDGREIVTYDPSELDQLELAYAITVHKSQGSTFDRVILVLpsehSPLLSRELLYTAL 479
|
490 500 510
....*....|....*....|....*....|....*...
gi 736477730 727 TRHREDLQLyYGTRSFsfnggLAKVLSRRQAKETTLEY 764
Cdd:COG0507 480 TRARELLTL-VGDRDA-----LARAVRRDTARATGLAE 511
|
|
| MobA_MobL |
pfam03389 |
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, ... |
17-243 |
4.84e-103 |
|
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilization proteins, which are essential for specific plasmid transfer.
Pssm-ID: 427275 [Multi-domain] Cd Length: 217 Bit Score: 322.71 E-value: 4.84e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 17 RSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKWARsliaDRsvsgasEAFWNNVEAFEKRADAQLAR 96
Cdd:pfam03389 1 RSAVAAAAYRSGEKLHDERTGRTHDYTRKKGVVHSEILLPENAPEWAA----DR------ETLWNAVEAFEKRKDAQLAR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 97 DLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYHD-NPGNPHIHLMTTLRPLTEDGFGSKKVAIISDDGQPVRTK 175
Cdd:pfam03389 71 EFEVALPRELSPEQRIELAREFVQENFVSKGMVADWAIHDpHPGNPHAHIMLTTRPLDEDGFWGKKVRKEDENGEKIRFK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736477730 176 SGKILYELWAGsTDDFNMLRDGWFERLNHHLALGGIDLRVDGRSYEKQGIDLEPTIHLGVRAKAIERK 243
Cdd:pfam03389 151 SGKIDTRDWND-KEQLKEWREAWADLANQHLALAGIDERIDHRSYAEQGIDLIPTIHEGPAARAMERK 217
|
|
| MobQ |
NF041496 |
MobQ family relaxase; |
1-223 |
3.81e-61 |
|
MobQ family relaxase;
Pssm-ID: 469384 [Multi-domain] Cd Length: 197 Bit Score: 207.08 E-value: 3.81e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 1 MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKWArsliADRsvsgasEAFW 80
Cdd:NF041496 1 MAIYHLSVKIISRSAGRSAVAAAAYRSGEKLTDERTGETHDYTRKGGVEHTEILAPPNAPPWA----ADR------ETLW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 81 NNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYHD-----NPGNPHIHLMTTLRPLTED 155
Cdd:NF041496 71 NAVEAAEKRKNSQLAREFEVALPHELSAEQRIELVREFVQENFVDKGMIADVAIHDpdrdgDQRNPHAHILLTTRPITPE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736477730 156 GFGSKkvaiisddgqpVRTKSGKILYELWagstddfnmlRDGWFERLNHHLALGGIDLRVDGRSYEKQ 223
Cdd:NF041496 151 GFGAK-----------SRDWNDKENLEEW----------REAWAELCNRALERAGSPERIDHRSLERQ 197
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
385-533 |
6.46e-39 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 141.92 E-value: 6.46e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 385 EQKAAIERIAGpARIAAVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWE---- 460
Cdd:cd17933 1 EQKAAVRLVLR-NRVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAAPTGKAAKRLSESTGIEASTIHRLLGINPgggg 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736477730 461 --RGRDVLDDKTTFVMDEAGMVASKQMAGFVdSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDR--IGYAELETIY 533
Cdd:cd17933 80 fyYNEENPLDADLLIVDEASMVDTRLMAALL-SAIPAGARLILVGDPDQLPSVGAGNVLRDLIASkgVPTVELTEVF 155
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK13826 |
PRK13826 |
Dtr system oriT relaxase; Provisional |
1-1099 |
0e+00 |
|
Dtr system oriT relaxase; Provisional
Pssm-ID: 237524 [Multi-domain] Cd Length: 1102 Bit Score: 2079.01 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 1 MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKWARSLIADRSVSGASEAFW 80
Cdd:PRK13826 1 MAIPHFSVSIVSRGSGRSAVLSAAYRHCAKMEYEREARTIDYTRKQGLLHEEFVLPADAPEWVRSMIADRSVSGASEAFW 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 81 NNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYHDNPGNPHIHLMTTLRPLTEDGFGSK 160
Cdd:PRK13826 81 NKVEAFEKRSDAQLAKDVTIALPLELTAEQNIALVRDFVEKHILAKGMVADWVYHDAPGNPHVHLMTTLRPLTEDGFGAK 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 161 KVAIISDDGQPVRTKSGKILYELWAGSTDDFNMLRDGWFERLNHHLALGGIDLRVDGRSYEKQGIDLEPTIHLGVRAKAI 240
Cdd:PRK13826 161 KVAVIGEDGQPVRTDAGKIVYELWAGSTDDFNALRDGWFACQNHHLALAGLDLRIDGRSYEKQGIELEPTIHLGVGAKAI 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 241 ERKAERQGVRPELERIELNERRRTENARRILKNPAIVLDLITREKSVFNERDVAKVLYRYIDDPAVFQQLMIRIILNPDV 320
Cdd:PRK13826 241 ERKAEQQGVRPELERIELQEERRSENARRIQRRPEIVLDLITREKSVFDERDVAKVLHRYVDDPAVFQSLMARILQSPEV 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 321 LRLERDTIDFATGEKLPARYSTRAMIRLEATMARQAMWLSAKKAHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARIA 400
Cdd:PRK13826 321 LRLERERIDFATGIRVPARYTTRAMIRLEAEMARRAIWLSGRSSHGVREAVLAATFARHARLSDEQKTAIEHVAGPARIA 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 401 AVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWERGRDVLDDKTTFVMDEAGMV 480
Cdd:PRK13826 401 AVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTLSSWELRWNQGRDQLDNKTVFVLDEAGMV 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 481 ASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDRIGYAELETIYRQRDDWMRKASLDLARGNVEKALVAYE 560
Cdd:PRK13826 481 ASRQMALFVEAVTRAGAKLVLVGDPEQLQPIEAGAAFRAIADRIGYAELETIYRQREQWMRDASLDLARGNVGKALDAYR 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 561 GQGRVLGSRLKFEAVERLIADWNRDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHVFKTADGERRFDVGDQI 640
Cdd:PRK13826 561 ANGRVIGSRLKAEAVESLIADWNRDYDPTKTTLILAHLRRDVRMLNEMARAKLVERGIVGEGHAFRTADGERRFAAGDQI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 641 VFLKNEGSLGVKNGMIGHVVEAQPNRIVALVGERDHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSMDRH 720
Cdd:PRK13826 641 VFLKNEGSLGVKNGMIGKVVEAAPNRIVAEIGEGEHRRQVTVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLSLDRH 720
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 721 LTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLEYERGQLYREALRFAETRGLHIVQVARTLVRDRLDWTL 800
Cdd:PRK13826 721 LTYVAMTRHREDLQLYYGRRSFAFNGGLIPVLSRRNAKETTLDYERGKLYRQALRFAENRGLHLVNVARTLARDRLDWTL 800
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 801 RQKAKLVDLGQRLSAFAARLGFTESPDTQTM---KEAAPMVAGIKTFSGTVADTVGDKLGEDPGLKRQWEEVSARFRYVF 877
Cdd:PRK13826 801 RQKQKLADLGARLRAIGERLGLAQSPKTQTMqnsKEAAPMVAGITTFPKSVADTVEDKLAADPALKKQWEEVSTRFHLVY 880
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 878 ADPETAFRAMNFDVVIADKDAARQTLETLETNAASIGPLKGKSGILASKAEREARSVAEVNVPALKRDLDKYLRMREAAA 957
Cdd:PRK13826 881 ADPETAFKAVNFDAMLKDKEVAKSTLQKLAAEPESFGALKGKTGILASKADRQDRERAEVNVPALKRDLERYLRMREEAE 960
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 958 QHIAADEQALRHQVSIDIPALSPAARVVLERVRDAIDRNDLPAAMAYALSNRETKLEIDGFNRAVTERFGERTLLSNAAQ 1037
Cdd:PRK13826 961 RKHEAEERALRQRVSIDIPALSPAARQVLERVRDAIDRNDLPAALEYALADRMVKAEIDGFNKAVTERFGERTFLPNAAR 1040
|
1050 1060 1070 1080 1090 1100
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736477730 1038 EPSGALYEKLSEGMKPEQKEQLKQAWPVMRTAQQLAAHERTVQSLRQAEEHRLMQRQTPVLK 1099
Cdd:PRK13826 1041 EPSGKTFEKVTAGMTPGQKEELKSAWPVMRTAQQLAAHERTTEALKQAETLRQTQSQGLSLK 1102
|
|
| TraA_Ti |
TIGR02768 |
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a ... |
1-781 |
0e+00 |
|
Ti-type conjugative transfer relaxase TraA; This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Pssm-ID: 274289 [Multi-domain] Cd Length: 744 Bit Score: 1080.98 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 1 MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKwarsliadrSVSgASEAFW 80
Cdd:TIGR02768 1 MAIYHLSASIISRSSGRSAVAAAAYRSAARLVDERIGRVFDFTRKDGVAHSEIVLPDGAPD---------SFL-ERAALW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 81 NNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYH-DNPGNPHIHLMTTLRPLTEDGFGS 159
Cdd:TIGR02768 71 NAVEAAEKRKDAQLAREFEIALPRELNLEQNIELARRFVRDHFVEKGMVADWAIHdDGDGNPHAHLLTTTRPLEENGFGA 150
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 160 KKVAIISDDGQPvrtksgkilYELWAGSTDDFNMLRDGWFERLNHHLALGGIDLRVDGRSYEKQGIDLEPTIHLGVRAKA 239
Cdd:TIGR02768 151 KKVRVLGEDGQP---------YEFWAGSKEDLDYWREQWAELANEHLAEAGLDLRIDHRSYAEQGIDLIPTKHIGVHAKA 221
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 240 IERKAErqgvrpELERIELNERRRTENARRILKNPAIVLDLITREKSVFNERDVAKVLYRYIDDPAVFQQLMIRIILNPD 319
Cdd:TIGR02768 222 MERRGE------AAERLPENLAIRQENAERILDNPELVLDLLTTEQSVFTRRDIARLLHRYIDDPQQFQQLMARVLASPQ 295
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 320 VLRLErdtiDFATGeKLPARYSTRAMIRLEATMARQAMWLSAKKAHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARI 399
Cdd:TIGR02768 296 LVALG----DPGTG-KEPARFSTREMIRLEAQMARSAEALSQSQGHGVSPPIVDAAIDQHYRLSEEQYEAVRHVTGSGDI 370
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 400 AAVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWERGRDVLDDKTTFVMDEAGM 479
Cdd:TIGR02768 371 AVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEAGM 450
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 480 VASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDRIGYAELETIYRQRDDWMRKASLDLARGNVEKALVAY 559
Cdd:TIGR02768 451 VGSRQMARVLKEAEEAGAKVVLVGDPEQLQPIEAGAAFRAIAERIGYAELETIRRQREAWARQASLELARGDVEKALAAY 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 560 EGQGRVLGSRLKFEAVERLIADWN---RDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHVFKTADGERRFDV 636
Cdd:TIGR02768 531 RDHGHITIHDTREEAIEQVVADWKqdlREANPAGSQIMLAHTRKDVRALNEAAREALIERGELGESILFQTARGERKFAA 610
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 637 GDQIVFLKNEGSLGVKNGMIGHVVEAQPNRIVALVgerDHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLASLS 716
Cdd:TIGR02768 611 GDRIVFLENNRDLGVKNGMLGTVEEIEDGRLVVQL---DSGELVIIPQAEYDALDHGYATTIHKSQGVTVDRAFVLASKS 687
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736477730 717 MDRHLTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLEYERGqlyrealrFAETRG 781
Cdd:TIGR02768 688 MDRHLAYVAMTRHRESVQLYAGKEDFTDRGALVKTLSRSSTKDTTLDYPHD--------FAIRRG 744
|
|
| PRK13889 |
PRK13889 |
conjugal transfer relaxase TraA; Provisional |
1-839 |
0e+00 |
|
conjugal transfer relaxase TraA; Provisional
Pssm-ID: 237546 [Multi-domain] Cd Length: 988 Bit Score: 641.36 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 1 MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPK-WArsliaDRsvsgasEAF 79
Cdd:PRK13889 1 MAIYHLHVKVIGRKAGSSAVASAAYRSASRLRDERLDRSHDFSAKRGVVHSEVMLPEGAPEaWS-----DR------ERL 69
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 80 WNNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYH-----DNPGNPHIHLMTTLRPLTE 154
Cdd:PRK13889 70 WNDVEAFEKRKDAQLAREVEFAIPREMTQAQGIELARDFVQAEFVDRGMIADLNVHwdigeDGMAKPHAHVMLTMRAVDE 149
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 155 DGFGSKkvaiisddgqpVRTKSGKILYELWagstddfnmlRDGWFERLNHHLALGGIDLRVDGRSYEKQGIDLEPTIHLG 234
Cdd:PRK13889 150 NGFGAK-----------VRDWNRTELVERW----------RERWAELANERLAELDIDARIDHRSLEAQGIALEPQSQIG 208
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 235 VRAKAIERKAErqgvrpELERIELNERRRTENARRILKNPAIVLDLITREKSVFNERDVAKVLYRYIDDPAVFQQLMIRI 314
Cdd:PRK13889 209 AAAQRIEGEGI------EADRAEMHREIARRNGERIIADPSIALDAITHQQSTFTRRDLAKFAHRHSDGIDQFNAVMGAM 282
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 315 ILNPDVLRLERDtidfATGEKlpaRYSTRAMIRLEATMARQAMWLSAKKAHAVSEAVLDVTFRRHE----RLSDEQKAAI 390
Cdd:PRK13889 283 RAAPDLVELGKD----GRGED---RFTTRAMIETEQRLHRAAELMAERERHAVSDADREAALARAEarglVLSGEQADAL 355
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 391 ERIAGPARIAAVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWERGRDVLDDKT 470
Cdd:PRK13889 356 AHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTIASLEHGWGQGRDLLTSRD 435
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 471 TFVMDEAGMVASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDRIGYAELETIYRQRDDWMRKASLDLARG 550
Cdd:PRK13889 436 VLVIDEAGMVGTRQLERVLSHAADAGAKVVLVGDPQQLQAIEAGAAFRSIHERHGGAEIGEVRRQREDWQRDATRDLATG 515
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 551 NVEKALVAYEGQGRVLGSRLKFEAVERLIADWNRD--YDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHVFKTA 628
Cdd:PRK13889 516 RTGEALDAYEAHGMVHAAATREQARADLIDRWDRDrqAAPDRSRIILTHTNDEVRALNEAARERMRAAGDLGDDVRVTVE 595
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 629 DGERRFDVGDQIVFLKNEGSLGVKNGMIGHVVEAQPNRIVALVgerDHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDR 708
Cdd:PRK13889 596 RGERSFASGDRVMFLQNERGLGVKNGTLGTIEQVSAQSMSVRL---DDGRSVAFDLKDYDRIDHGYAATIHKAQGMTVDR 672
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 709 VKVLASLSMDRHLTYVAMTRHREDLQLYYGTRSFSFNGGLAKVLSRRQAKETTLEYERgqlYREALRFAETRGL----HI 784
Cdd:PRK13889 673 THVLATPGMDAHSSYVALSRHRDGVDLHYGRDDFADRDRLVRTLSRDRAKDMASDYER---ADPAQSYAERRGItfreRV 749
|
810 820 830 840 850 860
....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 785 VQVARTLV----RDRLDwTLRQKAKLV-DLGQRLSAFAARLGFTESPDTQTmkEAAPMVA 839
Cdd:PRK13889 750 AEIVRKIVpeklRGMFD-GLRLPDPVPgPEAGRRPERESAAATTDAPARTV--AADPEAA 806
|
|
| RecD |
COG0507 |
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) ... |
267-764 |
4.68e-106 |
|
ATPase/5#-3# helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V) [Replication, recombination and repair];
Pssm-ID: 440273 [Multi-domain] Cd Length: 514 Bit Score: 341.96 E-value: 4.68e-106
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 267 ARRILKNPAI----VLDLITREKSVFNERDVAkvLYRYIDDPAVFQQLMIRIILNPDvLRLERDtidfatgeklpaRYST 342
Cdd:COG0507 20 ADFIARDDPIraaaLLSRAAGEGHTFPLEDLA--AARLLGVAEDIEAALAALVESGP-LVLDGR------------RYLT 84
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 343 RaMIRLEATMARQAMWLSAKK--AHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAASEA 420
Cdd:COG0507 85 R-LLEAEQRLARRLRRLARPAldEADVEAALAALEPRAGITLSDEQREAVALALTTRRVSVLTGGAGTGKTTTLRALLAA 163
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 421 WELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASW-ELRWERGR------DVLDDKTTFVMDEAGMVASKQMAGFVDSVV 493
Cdd:COG0507 164 LEALGLRVALAAPTGKAAKRLSESTGIEARTIHRLlGLRPDSGRfrhnrdNPLTPADLLVVDEASMVDTRLMAALLEALP 243
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 494 RTGAKIVLVGDPEQLQPIEAGAAFRVIVDR--IGYAELETIYRQRDDWMRKA-SLDLARGNVEKALVAYEGQGRVLGSRL 570
Cdd:COG0507 244 RAGARLILVGDPDQLPSVGAGAVLRDLIESgtVPVVELTEVYRQADDSRIIElAHAIREGDAPEALNARYADVVFVEAED 323
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 571 KFEAVERLIADWNRDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGGGHvfkTADGERRFDVGDQIVFLKNEGSLG 650
Cdd:COG0507 324 AEEAAEAIVELYADRPAGGEDIQVLAPTNAGVDALNQAIREALNPAGELEREL---AEDGELELYVGDRVMFTRNDYDLG 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 651 VKNGMIGHVVEAQPNRIVALVgERDHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVLA----SLSMDRHLTYVAM 726
Cdd:COG0507 401 VFNGDIGTVLSIDEDEGRLTV-RFDGREIVTYDPSELDQLELAYAITVHKSQGSTFDRVILVLpsehSPLLSRELLYTAL 479
|
490 500 510
....*....|....*....|....*....|....*...
gi 736477730 727 TRHREDLQLyYGTRSFsfnggLAKVLSRRQAKETTLEY 764
Cdd:COG0507 480 TRARELLTL-VGDRDA-----LARAVRRDTARATGLAE 511
|
|
| MobA_MobL |
pfam03389 |
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, ... |
17-243 |
4.84e-103 |
|
MobA/MobL family; This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilization proteins, which are essential for specific plasmid transfer.
Pssm-ID: 427275 [Multi-domain] Cd Length: 217 Bit Score: 322.71 E-value: 4.84e-103
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 17 RSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKWARsliaDRsvsgasEAFWNNVEAFEKRADAQLAR 96
Cdd:pfam03389 1 RSAVAAAAYRSGEKLHDERTGRTHDYTRKKGVVHSEILLPENAPEWAA----DR------ETLWNAVEAFEKRKDAQLAR 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 97 DLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYHD-NPGNPHIHLMTTLRPLTEDGFGSKKVAIISDDGQPVRTK 175
Cdd:pfam03389 71 EFEVALPRELSPEQRIELAREFVQENFVSKGMVADWAIHDpHPGNPHAHIMLTTRPLDEDGFWGKKVRKEDENGEKIRFK 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736477730 176 SGKILYELWAGsTDDFNMLRDGWFERLNHHLALGGIDLRVDGRSYEKQGIDLEPTIHLGVRAKAIERK 243
Cdd:pfam03389 151 SGKIDTRDWND-KEQLKEWREAWADLANQHLALAGIDERIDHRSYAEQGIDLIPTIHEGPAARAMERK 217
|
|
| AAA_30 |
pfam13604 |
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA ... |
381-565 |
1.90e-63 |
|
AAA domain; This family of domains contain a P-loop motif that is characteriztic of the AAA superfamily. Many of the proteins in this family are conjugative transfer proteins. There is a Walker A and Walker B.
Pssm-ID: 433343 [Multi-domain] Cd Length: 191 Bit Score: 213.19 E-value: 1.90e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 381 RLSDEQKAAIERIAG-PARIAAVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWeLRW 459
Cdd:pfam13604 1 TLNAEQAAAVRALLTsGDRVAVLVGPAGTGKTTALKALREAWEAAGYRVIGLAPTGRAAKVLGEELGIPADTIAKL-LHR 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 460 ERGRDVLDDKTTFVMDEAGMVASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVD-RIGYAELETIYRQRDD 538
Cdd:pfam13604 80 LGGRAGLDPGTLLIVDEAGMVGTRQMARLLKLAEDAGARVILVGDPRQLPSVEAGGAFRDLLAaGIGTAELTEIVRQRDP 159
|
170 180
....*....|....*....|....*..
gi 736477730 539 WMRKASLDLARGNVEKALVAYEGQGRV 565
Cdd:pfam13604 160 WQRAASLALRDGDPAEALDALADRGRI 186
|
|
| MobQ |
NF041496 |
MobQ family relaxase; |
1-223 |
3.81e-61 |
|
MobQ family relaxase;
Pssm-ID: 469384 [Multi-domain] Cd Length: 197 Bit Score: 207.08 E-value: 3.81e-61
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 1 MAIAHFSASIVSRGSGRSVVLSAAYRHCAKVEYEREARTIDYTRKQGLLHEEFVLPAGAPKWArsliADRsvsgasEAFW 80
Cdd:NF041496 1 MAIYHLSVKIISRSAGRSAVAAAAYRSGEKLTDERTGETHDYTRKGGVEHTEILAPPNAPPWA----ADR------ETLW 70
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 81 NNVEAFEKRADAQLARDLTIALPLELSMEQNIALVRDFVDKHILAKGMVADWVYHD-----NPGNPHIHLMTTLRPLTED 155
Cdd:NF041496 71 NAVEAAEKRKNSQLAREFEVALPHELSAEQRIELVREFVQENFVDKGMIADVAIHDpdrdgDQRNPHAHILLTTRPITPE 150
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736477730 156 GFGSKkvaiisddgqpVRTKSGKILYELWagstddfnmlRDGWFERLNHHLALGGIDLRVDGRSYEKQ 223
Cdd:NF041496 151 GFGAK-----------SRDWNDKENLEEW----------REAWAELCNRALERAGSPERIDHRSLERQ 197
|
|
| DEXSc_RecD-like |
cd17933 |
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1. ... |
385-533 |
6.46e-39 |
|
DEXS-box helicase domain of RecD and similar proteins; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350691 [Multi-domain] Cd Length: 155 Bit Score: 141.92 E-value: 6.46e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 385 EQKAAIERIAGpARIAAVVGRAGAGKTTMMKAASEAWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWE---- 460
Cdd:cd17933 1 EQKAAVRLVLR-NRVSVLTGGAGTGKTTTLKALLAALEAEGKRVVLAAPTGKAAKRLSESTGIEASTIHRLLGINPgggg 79
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736477730 461 --RGRDVLDDKTTFVMDEAGMVASKQMAGFVdSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDR--IGYAELETIY 533
Cdd:cd17933 80 fyYNEENPLDADLLIVDEASMVDTRLMAALL-SAIPAGARLILVGDPDQLPSVGAGNVLRDLIASkgVPTVELTEVF 155
|
|
| Bep_C_terminal |
pfam17841 |
BID domain of Bartonella effector protein (Bep); This entry is the BID (Bep intracellular ... |
855-951 |
2.24e-38 |
|
BID domain of Bartonella effector protein (Bep); This entry is the BID (Bep intracellular delivery) domain located at the C-terminal of Bartonella effector proteins (Beps). It functions as a secretion signal in a subfamily of protein substrates of bacterial type IV secretion (T4S) systems. It mediates transfer of (1) relaxases and the attached DNA during bacterial conjugation, and (2) numerous Beps during protein transfer into host cells infected by pathogenic Bartonella species. Crystal structure of several representative BID domains show a conserved fold characterized by a compact, antiparallel four-helix bundle topped with a hook.
Pssm-ID: 436086 [Multi-domain] Cd Length: 97 Bit Score: 138.27 E-value: 2.24e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 855 KLGEDPGLKRQWEEVSARFRYVFADPETAFRAMNFDVVIADKDAARQTLETLETNAASIGPLKGKSGILASKAEREARSV 934
Cdd:pfam17841 1 KLAADPALKKQWEEVSTRFRLVYADPEAAFAAMNFDAVLRDPAMAERTLRRLAAEPESFGALKGKTGILASRAERRERRT 80
|
90
....*....|....*..
gi 736477730 935 AEVNVPALKRDLDKYLR 951
Cdd:pfam17841 81 AEVNVPALARDIERYLR 97
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
379-764 |
4.78e-24 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 109.99 E-value: 4.78e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 379 HERLSDEQKAAIERIAGPA-RIAAVVGRAGAGKTTMMKAASEAWELAG----YRVVGGALAGKAAEGLEKeAGIQSRTLA 453
Cdd:TIGR02760 1017 LERLTHGQKQAIHLIISTKdRFVAVQGLAGVGKTTMLESRYKPVLQAFeseqLQVIGLAPTHEAVGELKS-AGVQAQTLD 1095
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 454 SW--ELRWERGRDVLDDKTTFVMDEAGMVASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDR--IGYAEL 529
Cdd:TIGR02760 1096 SFltDISLYRNSGGDFRNTLFILDESSMVSNFQLTHATELVQKSGSRAVSLGDIAQLQSLAAGKPFELAITFdiIDTAIM 1175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 530 ETIYRQRDD-WMRKASLDLARGNVEKALVAYEGQGRVLGSRLKFEAV-----------ERLIADWN-------------- 583
Cdd:TIGR02760 1176 KEIVRQNNSaELKAAHNSLDKRSNPKALELLKNQNPLQHELMQNAAMpeiasdeqglqKHDLAKLAvntekpkkaqpdat 1255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 584 --------RDY----DQTKT-TLILAHLRRDVRMLNVMAREKLVERGIVGG--------------------------GHV 624
Cdd:TIGR02760 1256 vtlyreivKDYlsrtPEFREnTLIIAHTNNDRTGIYPFIREGLIKQKELSKqqvtvprlrsvnisspelktmmpfekGAV 1335
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 625 FKTADG--------------------------------------------ERRFDVGDQIVFLKNEGSLGVKNGMIGHVV 660
Cdd:TIGR02760 1336 LRLKKDayltiadidrehgkltvadiktgserdilprqldhtftslysdsELPLAKGDKIRLRATDKNRGIKANEVYTVT 1415
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 661 EAQPNRIVALVGERdHRRQVIVEQRFYNNLDHGYATTIHKSQGATVDRVKVL--ASLSMDRH-LTYVAMTRHREDLQLYY 737
Cdd:TIGR02760 1416 QVVNGLSVQLSKVK-NSLSLKPIQAKDKHWDYAYTRTADSAQGATYTFVIALikGRLALTNYrSAYIDLTRASHHVELYT 1494
|
490 500
....*....|....*....|....*..
gi 736477730 738 GTRSFSFNGGLAKVLSRRQAKETTLEY 764
Cdd:TIGR02760 1495 DNKEGTVKSWKQREANKTSAVETEEDY 1521
|
|
| PRK13709 |
PRK13709 |
conjugal transfer nickase/helicase TraI; Provisional |
380-620 |
2.01e-21 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237478 [Multi-domain] Cd Length: 1747 Bit Score: 101.41 E-value: 2.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 380 ERLSDEQKAAIERIAG-PARIAAVVGRAGAGKTTMMKAASEAWEL----AGYRVVGGALAGKAAEGLeKEAGIQSRTLAS 454
Cdd:PRK13709 966 EGLTSGQRAATRMILEsTDRFTVVQGYAGVGKTTQFRAVMSAVNTlpesERPRVVGLGPTHRAVGEM-RSAGVDAQTLAS 1044
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 455 ----WELRWERGRDVLDDKTTFVMDEAGMVASKQMAGFVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDR--IGYAE 528
Cdd:PRK13709 1045 flhdTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVSSGDTDQLQAIAPGQPFRLMQTRsaADVAI 1124
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 529 LETIYRQRDDwMRKASLDLARGNVEKALVAYEGQ-----------------------------------GRVLGSRLKFE 573
Cdd:PRK13709 1125 MKEIVRQTPE-LREAVYSLINRDVERALSGIESVkpsqvprqegawapessvtefshpqeaklaeaqqkAMLAFPDVPMT 1203
|
250 260 270 280
....*....|....*....|....*....|....*....|....*...
gi 736477730 574 AVERLIADW-NRDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVG 620
Cdd:PRK13709 1204 LYEAIVRDYtGRTPEAREQTLIITHLNEDRRVLNSMIHDAREKAGELG 1251
|
|
| SF1_C_RecD |
cd18809 |
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11. ... |
687-736 |
3.72e-14 |
|
C-terminal helicase domain of RecD family helicases; RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD family helicases are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350196 [Multi-domain] Cd Length: 80 Bit Score: 68.74 E-value: 3.72e-14
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|...
gi 736477730 687 YNNLDHGYATTIHKSQGATVDRVKVL---ASLSMDRHLTYVAMTRHREDLQLY 736
Cdd:cd18809 27 LNERLQAYAMTIHKSQGSEFDRVIVVlptSHPMLSRGLLYTALTRARKLLTLV 79
|
|
| recD |
TIGR01447 |
exodeoxyribonuclease V, alpha subunit; This family describes the exodeoxyribonuclease V alpha ... |
385-736 |
2.05e-12 |
|
exodeoxyribonuclease V, alpha subunit; This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273631 [Multi-domain] Cd Length: 582 Bit Score: 71.33 E-value: 2.05e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 385 EQKAAIERIAGPARIAAVVGRAGAGKTT----MMKAASEAWELAGY-RVVGGALAGKAAEGLEKEAGIQSRTLASWE--- 456
Cdd:TIGR01447 147 NWRKTAVALALKSNFSLITGGPGTGKTTtvarLLLALVKQSPKQGKlRIALAAPTGKAAARLAESLRKAVKNLAAAEali 226
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 457 ----------------------LRWERGR----DVLddkttfVMDEAGMVASKQMAGFVDSVvRTGAKIVLVGDPEQLQP 510
Cdd:TIGR01447 227 aalpseavtihrllgikpdtkrFRHHERNplplDVL------VVDEASMVDLPLMAKLLKAL-PPNTKLILLGDKNQLPS 299
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 511 IEAGAAFRVIVDRIG------YAELETIYRQRDDWMRKASLDL-----ARGNVEKALVA---YEGQGRVLGSRLKF---- 572
Cdd:TIGR01447 300 VEAGAVLGDLCELASigksilYALCKKINSKTRNPLSDNVCFLktshrFGKDSGIGQLAkaiNSGDIEAVLNNLRSgqli 379
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 573 ---------EAVERLIA-------DWNRDYDQTKTTLILAHLRRdVRML--------NVMAREKLVERGIVGGGhvfKTA 628
Cdd:TIGR01447 380 efeflnskeDAIERLKNlyvkyrtFLQKLAALSDAKEILETFDR-LRLLtalrdgpfGVLGLNRRIEQELQEKY---FDP 455
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 629 DGERRFdVGDQIVFLKNEGSLGVKNGMIGhVVEAQPNRIVALVGER-DHRRQVIVEQrfYNNLDHGYATTIHKSQGATVD 707
Cdd:TIGR01447 456 DEEGWY-IGRPIMVTENDYTLGLFNGDIG-VLLRDPDGILTVWFHFaDGSKAVLPSR--LPNYETAFAMTVHKSQGSEFD 531
|
410 420 430
....*....|....*....|....*....|...
gi 736477730 708 RVKVL----ASLSMDRHLTYVAMTRHREDLQLY 736
Cdd:TIGR01447 532 HVILIlpngNSPVLTRELLYTGITRAKDQLSVW 564
|
|
| PRK14712 |
PRK14712 |
conjugal transfer nickase/helicase TraI; Provisional |
342-619 |
2.29e-12 |
|
conjugal transfer nickase/helicase TraI; Provisional
Pssm-ID: 237796 [Multi-domain] Cd Length: 1623 Bit Score: 71.82 E-value: 2.29e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 342 TRAMIRLEATMARQAMwlsaKKAHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPA-RIAAVVGRAGAGKTTMMKAASEA 420
Cdd:PRK14712 800 SRASYEAEKSILRHIL----EGKEAVTPLMERVPGELMEKLTSGQRAATRMILETSdRFTVVQGYAGVGKTTQFRAVMSA 875
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 421 W----ELAGYRVVGGALAGKAAeGLEKEAGIQSRTLASW----ELRWERGRDVLDDKTTFVMDEAGMVASKQMAGFVDSV 492
Cdd:PRK14712 876 VnmlpESERPRVVGLGPTHRAV-GEMRSAGVDAQTLASFlhdtQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALI 954
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 493 VRTGAKIVLVGDPEQLQPIEAGAAFRVIVDRIG--YAELETIYRQRDDwMRKASLDLARGNVEKALVAYEgqgrvlgsRL 570
Cdd:PRK14712 955 AAGGGRAVASGDTDQLQAIAPGQPFRLQQTRSAadVVIMKEIVRQTPE-LREAVYSLINRDVERALSGLE--------RV 1025
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 571 KFEAVERLIADWN------------------------------------------RDY-----DQTKTTLILAHLRRDVR 603
Cdd:PRK14712 1026 KPSQVPRLEGAWApehsvtefshsqeaklaeaqqkamlkgeafpdvpmtlyeaivRDYtgrtpEAREQTLIVTHLNEDRR 1105
|
330
....*....|....*....
gi 736477730 604 MLNVM---AREKLVERGIV 619
Cdd:PRK14712 1106 VLNSMihdAREKAGELGQV 1124
|
|
| TraI_TIGR |
TIGR02760 |
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome ... |
340-621 |
1.08e-10 |
|
conjugative transfer relaxase protein TraI; This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Pssm-ID: 274285 [Multi-domain] Cd Length: 1960 Bit Score: 66.47 E-value: 1.08e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 340 YSTRAMIRLEatmaRQAMWLSAKKAHAVSEAVLDVTFRRHERLSDEQKAAIERIAGPARIAAVVGRAGAGKTTMMKAASE 419
Cdd:TIGR02760 393 FTTQTMLTNE----KELIARTEGGKGALRVIVSKQKLSEFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLH 468
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 420 AWELAGYRVVGGALAGKAAEGLEKEAGIQSRTLASWELRWERGRDV------------LDDKTTFVMDEAGMVASKQMAG 487
Cdd:TIGR02760 469 LASEQGYEIQIITAGSLSAQELRQKIPRLASTFITWVKNLFNDDQDhtvqglldksspFSNKDIFVVDEANKLSNNELLK 548
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 488 FVDSVVRTGAKIVLVGDPEQLQPIEAGAAFRVIVDrigyAELETiYRQRDDWMRKASLDLARGNvekalvayegqgrvlg 567
Cdd:TIGR02760 549 LIDKAEQHNSKLILLNDSAQRQGMSAGSAIDLLKE----GGVTT-YAWVDTKQQKASVEISEAV---------------- 607
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....
gi 736477730 568 srlKFEAVERLIADWNRDYDQTKTTLILAHLRRDVRMLNVMAREKLVERGIVGG 621
Cdd:TIGR02760 608 ---DKLRVDYIASAWLDLTPDRQNSQVLATTHREQQDLTQIIRNALKQEGQLSR 658
|
|
| SF1_C |
cd18786 |
C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family ... |
659-736 |
5.52e-05 |
|
C-terminal helicase domain of superfamily 1 DEAD/H-box helicases; Superfamily (SF)1 family members include UvrD/Rep, Pif1-like, and Upf-1-like proteins. Similar to SF2 helicases, they do not form toroidal, predominantly hexameric structures like SF3-6. SF1 helicases are a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Their helicase core is surrounded by C- and N-terminal domains with specific functions such as nucleases, RNA or DNA binding domains, or domains engaged in protein-protein interactions. The core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350173 [Multi-domain] Cd Length: 89 Bit Score: 42.81 E-value: 5.52e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736477730 659 VVEAQPNRIVALVGERDHRRQVIVEQRFYNN------LDHGYATTIHKSQGATVDRVKVLAS--LSMDRHLTYVAMTRHR 730
Cdd:cd18786 3 IVNAANGLYKGVVLTPYHRDRAYLNQYLQGLsldefdLQLVGAITIDSSQGLTFDVVTLYLPtaNSLTPRRLYVALTRAR 82
|
....*.
gi 736477730 731 EDLQLY 736
Cdd:cd18786 83 KRLVIY 88
|
|
| Viral_helicase1 |
pfam01443 |
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated ... |
691-736 |
4.32e-04 |
|
Viral (Superfamily 1) RNA helicase; Helicase activity for this family has been demonstrated and NTPase activity. This helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis.
Pssm-ID: 366646 [Multi-domain] Cd Length: 227 Bit Score: 43.14 E-value: 4.32e-04
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....
gi 736477730 691 DHGY-ATTIHKSQGATVDRVKV-------LASLSMDRHLTYVAMTRHREDLQLY 736
Cdd:pfam01443 173 SLGVrVTTVHEVQGLTFDSVTLvldtdtdLLIISDSPEHLYVALTRHRKSLHIL 226
|
|
| ABCG_EPDR |
cd03213 |
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette ... |
373-431 |
7.60e-04 |
|
Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily; ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Pssm-ID: 213180 [Multi-domain] Cd Length: 194 Bit Score: 41.77 E-value: 7.60e-04
10 20 30 40 50 60
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 736477730 373 DVTFRRHERLSDEQKAAIERIAG---PARIAAVVGRAGAGKTTMMKAaseaweLAGYRVVGG 431
Cdd:cd03213 8 NLTVTVKSSPSKSGKQLLKNVSGkakPGELTAIMGPSGAGKSTLLNA------LAGRRTGLG 63
|
|
| UvrD_C_2 |
pfam13538 |
UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety ... |
692-736 |
4.43e-03 |
|
UvrD-like helicase C-terminal domain; This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.
Pssm-ID: 463913 [Multi-domain] Cd Length: 52 Bit Score: 36.40 E-value: 4.43e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 736477730 692 HGYATTIHKSQGATVDRVKVLASLSMD-------RHLTYVAMTRHREDLQLY 736
Cdd:pfam13538 1 LAYALTVHKAQGSEFPAVFLVDPDLTAhyhsmlrRRLLYTAVTRARKKLVLV 52
|
|
| |
