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Conserved domains on  [gi|736518944|ref|WP_034534725|]
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MULTISPECIES: F0F1 ATP synthase subunit epsilon [Lactobacillaceae]

Protein Classification

FoF1 ATP synthase subunit epsilon( domain architecture ID 11479057)

FoF1 ATP synthase subunit epsilon is part of the catalytic core of the F-type ATPase that produces ATP from ADP in the presence of a proton gradient across the membrane

Gene Ontology:  GO:0045261|GO:0046933|GO:0005524|GO:0005886
SCOP:  3000182|3000785

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 8-140 1.44e-36

F0F1 ATP synthase subunit epsilon; Validated


:

Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 121.79  E-value: 1.44e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVK-SGSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:PRK00571   4 LTVDIVSPEGLIYS-GEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLADS 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 736518944  87 AEKQGDIDVDRAAAARDRAQKALEiarQKHDNQEILRNQVALRRAINRMHVAKH 140
Cdd:PRK00571  83 AERADDIDEARAEEAKERAEEALE---NKHDDVDYARAQAALARAIARLRVAEK 133
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 8-140 1.44e-36

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 121.79  E-value: 1.44e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVK-SGSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:PRK00571   4 LTVDIVSPEGLIYS-GEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLADS 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 736518944  87 AEKQGDIDVDRAAAARDRAQKALEiarQKHDNQEILRNQVALRRAINRMHVAKH 140
Cdd:PRK00571  83 AERADDIDEARAEEAKERAEEALE---NKHDDVDYARAQAALARAIARLRVAEK 133
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 8-140 8.27e-34

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 114.90  E-value: 8.27e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSD-VDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:COG0355    1 LKLEIVTPERVLFS-GEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGeEEYFAVSGGFLEVQPNKVTILADT 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 736518944  87 AEKQGDIdvdRAAAARDRAQKALEIARQKHDNQEILRNQVALRRAINRMHVAKH 140
Cdd:COG0355   80 AERAEDI---DVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAEK 130
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 8-133 2.66e-29

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 102.98  E-value: 2.66e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKS-GSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:cd12152    1 LKLEIVTPERVFFS-GEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDeDGEEKYFAVSGGFLEVTPNRVTILADE 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 736518944  87 AEKQGDIdvdRAAAARDRAQKALEIARQKHDNQEILRNQVALRRAIN 133
Cdd:cd12152   80 AERPEDI---DVERAEEALERAEERLAQAKDEREKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 8-87 1.97e-27

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 96.74  E-value: 1.97e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944    8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVK-SGSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:pfam02823   1 LKLEIVTPERVVFS-GEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKtEDGEEEYIAVSGGFLEVQPNKVTILADS 79


                  .
gi 736518944   87 A 87
Cdd:pfam02823  80 A 80
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 8-139 7.57e-23

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 86.92  E-value: 7.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944    8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDE-IAVNGGFVEFSNNNLTVIADS 86
Cdd:TIGR01216   2 LKLEIVTPEGEIYS-GEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEhIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 736518944   87 AEKQGDIDVDRAAAARDRAQKALEiarQKHDNQEILRNQVALRRAINRMHVAK 139
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLE---SAEDDKDLAEALLKLKKARAQLEALE 130
 
Name Accession Description Interval E-value
atpC PRK00571
F0F1 ATP synthase subunit epsilon; Validated
 8-140 1.44e-36

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 234796 [Multi-domain]  Cd Length: 135  Bit Score: 121.79  E-value: 1.44e-36
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVK-SGSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:PRK00571   4 LTVDIVSPEGLIYS-GEVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKkDDGEEEVIAVSGGFLEVQPDKVTVLADS 82

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 736518944  87 AEKQGDIDVDRAAAARDRAQKALEiarQKHDNQEILRNQVALRRAINRMHVAKH 140
Cdd:PRK00571  83 AERADDIDEARAEEAKERAEEALE---NKHDDVDYARAQAALARAIARLRVAEK 133
AtpC COG0355
FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP ...
 8-140 8.27e-34

FoF1-type ATP synthase, epsilon subunit [Energy production and conversion]; FoF1-type ATP synthase, epsilon subunit is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440124 [Multi-domain]  Cd Length: 131  Bit Score: 114.90  E-value: 8.27e-34
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSD-VDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:COG0355    1 LKLEIVTPERVLFS-GEVESVVAPGAEGEFGILPGHAPLLTALKPGVVRIRTEDGeEEYFAVSGGFLEVQPNKVTILADT 79

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....
gi 736518944  87 AEKQGDIdvdRAAAARDRAQKALEIARQKHDNQEILRNQVALRRAINRMHVAKH 140
Cdd:COG0355   80 AERAEDI---DVERAEEAKERAEERLEEAKDDIDYARAEAALARALARLRAAEK 130
F1-ATPase_delta cd12152
mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, ...
 8-133 2.66e-29

mitochondrial ATP synthase delta subunit; The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta, and epsilon subunits with a stoichiometry of 3:3:1:1:1. Alpha and beta subunit form the globular catalytic moiety, a hexameric ring of alternating subunits. Gamma, delta and epsilon subunits form a stalk, connecting F1 to F0, the integral membrane proton translocating domain. In bacteria, which is lacking a eukaryotic epsilon subunit homolog, this subunit is called the epsilon subunit.


Pssm-ID: 213395 [Multi-domain]  Cd Length: 123  Bit Score: 102.98  E-value: 2.66e-29
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKS-GSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:cd12152    1 LKLEIVTPERVFFS-GEVESVVLPGTEGEFGILPGHAPLVTALKPGVLRIRDeDGEEKYFAVSGGFLEVTPNRVTILADE 79

                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*..
gi 736518944  87 AEKQGDIdvdRAAAARDRAQKALEIARQKHDNQEILRNQVALRRAIN 133
Cdd:cd12152   80 AERPEDI---DVERAEEALERAEERLAQAKDEREKARAEAALERALA 123
ATP-synt_DE_N pfam02823
ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These ...
 8-87 1.97e-27

ATP synthase, Delta/Epsilon chain, beta-sandwich domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. The subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 460714 [Multi-domain]  Cd Length: 80  Bit Score: 96.74  E-value: 1.97e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944    8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVK-SGSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:pfam02823   1 LKLEIVTPERVVFS-GEVEMVVAPGAEGELGILPGHAPLLTALKPGVLRIKtEDGEEEYIAVSGGFLEVQPNKVTILADS 79


                  .
gi 736518944   87 A 87
Cdd:pfam02823  80 A 80
atpC PRK13446
F0F1 ATP synthase subunit epsilon; Provisional
 8-138 7.64e-27

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184056 [Multi-domain]  Cd Length: 136  Bit Score: 97.33  E-value: 7.64e-27
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNLTVIADSA 87
Cdd:PRK13446   5 LKLEIVTPEKKVLS-EEVDEVGAPGVLGEFGVLPGHAPFLTALKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLAETA 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|.
gi 736518944  88 EKQGDIDVDRAAAARDRAQKALeiaRQKHDNQEILRNQVALRRAINRMHVA 138
Cdd:PRK13446  84 ERAEEIDVERARAALERAEQRL---KKLTPEDDSARAEAALERALIRLQVA 131
ATP_synt_epsi TIGR01216
ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five ...
 8-139 7.57e-23

ATP synthase, F1 epsilon subunit (delta in mitochondria); This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273506 [Multi-domain]  Cd Length: 130  Bit Score: 86.92  E-value: 7.57e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944    8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDE-IAVNGGFVEFSNNNLTVIADS 86
Cdd:TIGR01216   2 LKLEIVTPEGEIYS-GEVESVILPGSEGELGILPGHAPLITALKPGVVRIRKLGDDWEhIAVSGGFAEVQPDKVTILADG 80

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|...
gi 736518944   87 AEKQGDIDVDRAAAARDRAQKALEiarQKHDNQEILRNQVALRRAINRMHVAK 139
Cdd:TIGR01216  81 AVFADDIDEAEAEKALEAAEKLLE---SAEDDKDLAEALLKLKKARAQLEALE 130
atpE CHL00063
ATP synthase CF1 epsilon subunit
 7-139 3.72e-18

ATP synthase CF1 epsilon subunit


Pssm-ID: 214351 [Multi-domain]  Cd Length: 134  Bit Score: 74.90  E-value: 3.72e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   7 VLTVSIVTPDGKVYEREdARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNLTVIADS 86
Cdd:CHL00063   2 TLNLRVLTPNRIVWDSE-VEEIILPTNSGQIGVLPNHAPIATALDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVND 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 736518944  87 AEKQGDIdvdraaaARDRAQKALEIARQKHDNQEILRNQV----ALRRAINRMHVAK 139
Cdd:CHL00063  81 AEKGSDI-------DPQEAQQTLEIAEANLEKAEGKKQKIeanlALKRARARVEAIN 130
atpC PRK13442
F0F1 ATP synthase subunit epsilon; Provisional
 6-88 1.65e-16

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184055 [Multi-domain]  Cd Length: 89  Bit Score: 69.28  E-value: 1.65e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   6 SVLTVSIVTPDGKVYEREdARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKV-KSGSDVDEIAVNGGFVEFSNNNLTVIA 84
Cdd:PRK13442   4 ATLHVNIVAADRPVWSGE-ATMVVARTTEGDIGILPGHEPLLGVLESGTVTVvTPGGERISAAVDGGFISFDSNKLTVLA 82


                 ....
gi 736518944  85 DSAE 88
Cdd:PRK13442  83 ERAE 86
atpC PRK13451
F0F1 ATP synthase subunit epsilon; Provisional
 8-93 2.77e-16

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 172059  Cd Length: 101  Bit Score: 69.05  E-value: 2.77e-16
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYEREdARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNLTVIADSA 87
Cdd:PRK13451   1 MKVKIVTPYGIVYDRE-SDFVSFRTVEGEMGILPRRAPIIAKLSVCDVKIKSGDDEYEYKVADGFLHCDGKNVIIITEEA 79


                 ....*.
gi 736518944  88 EKQGDI 93
Cdd:PRK13451  80 GREEEI 85
atpC PRK14735
F0F1 ATP synthase subunit epsilon; Provisional
 10-139 1.61e-14

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173197 [Multi-domain]  Cd Length: 139  Bit Score: 65.79  E-value: 1.61e-14
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944  10 VSIVTPDgKVYEREDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNLTVIADSAEK 89
Cdd:PRK14735   5 LEIVTAE-RVVLSDDVDMISAPTKDGRVGILPRHAPLLTILEPGELDIVKNGVRTPFAISGGFMEVLPHRVTILADTAER 83

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 736518944  90 QGDIDVDRAAAARDRAQKALeiaRQKHDNQEILRNQVALRRAINRMHVAK 139
Cdd:PRK14735  84 ADEIDEARAEQARAEAEQRR---RERQSEQDLALAEAKLRRAMVRLRVAQ 130
atpC PRK13444
F0F1 ATP synthase subunit epsilon; Provisional
 8-93 6.80e-13

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139576 [Multi-domain]  Cd Length: 127  Bit Score: 61.05  E-value: 6.80e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYEREdARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNLTVIADSA 87
Cdd:PRK13444   6 LTVSVISPEKILYKGE-VDSLIVPGSEGFFGILPNHAPLVATLGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILTDHG 84


                 ....*.
gi 736518944  88 EKQGDI 93
Cdd:PRK13444  85 ALKEDI 90
atpC PRK13450
F0F1 ATP synthase subunit epsilon; Provisional
 7-139 2.59e-12

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 184059 [Multi-domain]  Cd Length: 132  Bit Score: 59.78  E-value: 2.59e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   7 VLTVSIVTPDGKVYEREDARlVIVRTKSGQLGIMPNHVPVIASLEVDEVKV--KSGSDvDEIAVNGGFVEFSNNNLTVIA 84
Cdd:PRK13450   3 NIKLTILTPEKNFYIGEVKE-VITEGLDGDIAILPNHVPLITYLKPTITKIidENGEK-KKIFTSSGVLKVENNEVYILC 80

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 736518944  85 DSAEKQGDIDVDRAAAARDRAQKALeiarQKHDNQEILRNQVALRRAINRMHVAK 139
Cdd:PRK13450  81 DASEWPEEIDIKRAENAKKRAEERL----RKKDEIDVKRAELALFRAIARIKLKE 131
atpC PRK13449
ATP synthase F1 subunit epsilon;
8-88 1.26e-09

ATP synthase F1 subunit epsilon;


Pssm-ID: 184058 [Multi-domain]  Cd Length: 88  Bit Score: 51.70  E-value: 1.26e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYErEDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKS--GSDVDEIAVNGGFVEFSNNNLTVIAD 85
Cdd:PRK13449   4 LHFELVTPERLLRS-GEVDMVVVPGTEGDFGVLAGHAPFMTTLREGEVTVYSsdGAAPEVFHVQGGFAEVNEKGLTILAE 82


                 ...
gi 736518944  86 SAE 88
Cdd:PRK13449  83 HAV 85
atpC PRK13452
F0F1 ATP synthase subunit epsilon; Provisional
 8-110 5.22e-08

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 106409 [Multi-domain]  Cd Length: 145  Bit Score: 48.59  E-value: 5.22e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   8 LTVSIVTPDGKVYEREdARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNLTVIADSA 87
Cdd:PRK13452   6 LKVDVVSPLGSVFKGE-ADMVSLRGSAGEMGIAYGHTELLSTLPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDM 84

                         90       100
                 ....*....|....*....|...
gi 736518944  88 EKQGDIDVDRAAAARDRAQKALE 110
Cdd:PRK13452  85 ERAENLNQAEAEKARARAKEVLK 107
atpC PRK13448
F0F1 ATP synthase subunit epsilon; Provisional
 35-87 3.83e-07

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 139579 [Multi-domain]  Cd Length: 135  Bit Score: 46.31  E-value: 3.83e-07
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 736518944  35 GQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNLTVIADSA 87
Cdd:PRK13448  30 GDFGVLAGHAPVVAVIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLTVLADVA 82
atpC PRK13443
F0F1 ATP synthase subunit epsilon; Provisional
 1-87 5.94e-05

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 237388 [Multi-domain]  Cd Length: 136  Bit Score: 40.29  E-value: 5.94e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736518944   1 MADNnsvLTVSIVTPDgKVYEREDARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDEIAVNGGFVEFSNNNL 80
Cdd:PRK13443   1 MAGT---LQFDLVSPE-RRLASFQATAVQIPGADGDMTAMEGHAPTITTLRPGILRAHGPSGTQEYAVTGGFAEINATSI 76


                 ....*..
gi 736518944  81 TVIADSA 87
Cdd:PRK13443  77 SVLAEKA 83
atpC PRK01474
F0F1 ATP synthase subunit epsilon; Validated
 5-57 6.31e-05

F0F1 ATP synthase subunit epsilon; Validated


Pssm-ID: 100879  Cd Length: 112  Bit Score: 39.86  E-value: 6.31e-05
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 736518944   5 NSVLTVSIVTPDGKVYEREdARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKV 57
Cdd:PRK01474   2 NETILVKIITPLSIAFEKQ-AKMVTMPGEEGMFGVLPSHVPMIVSLKAGLVQV 53
atpC PRK14736
F0F1 ATP synthase subunit epsilon; Provisional
 12-87 2.48e-04

F0F1 ATP synthase subunit epsilon; Provisional


Pssm-ID: 173198 [Multi-domain]  Cd Length: 133  Bit Score: 38.62  E-value: 2.48e-04
                         10        20        30        40        50        60        70
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736518944  12 IVTPDGKVYEREdARLVIVRTKSGQLGIMPNHVPVIASLEVDEVKVKSGSDVDE-IAVNGGFVEFSNNNLTVIADSA 87
Cdd:PRK14736   8 LVGPERTLYSGE-VEAVQLPGSEGEMTVLPGHAPVLTTLKVGVITVTETTGNGKrIYVRGGFAEIGPTSVTVLAERA 83
ATP-synt_DE pfam00401
ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). ...
 106-137 2.70e-03

ATP synthase, Delta/Epsilon chain, long alpha-helix domain; Part of the ATP synthase CF(1). These subunits are part of the head unit of the ATP synthase. This subunit is called epsilon in bacteria and delta in mitochondria. In bacteria the delta (D) subunit is equivalent to the mitochondrial Oligomycin sensitive subunit, OSCP (pfam00213).


Pssm-ID: 459802  Cd Length: 45  Bit Score: 33.89  E-value: 2.70e-03
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 736518944  106 QKALEIARQ-----KHDNQEILRNQVALRRAINRMHV 137
Cdd:pfam00401   9 EEAKERAEErlaqaKQDDIDYARAQAALARALARLQA 45
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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