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Conserved domains on  [gi|736576304|ref|WP_034587694|]
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MULTISPECIES: YchJ family protein [unclassified Acinetobacter]

Protein Classification

YchJ family protein( domain architecture ID 11459551)

YchJ family protein similar to Escherichia coli UPF0225 protein YchJ

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 3-148 1.14e-67

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


:

Pssm-ID: 442249  Cd Length: 144  Bit Score: 201.61  E-value: 1.14e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   3 EACPCGLG-NYETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLEIVQ 81
Cdd:COG3012    4 SPCPCGSGkPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILA 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736576304  82 ANEKLDKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKDVWYFLDPTTDQKLTMkqpcicGSGKKFKQ 148
Cdd:COG3012   84 TEAGPDDDEGTVEFVARYREGGRAGRLHERSRFVREDGRWYYVDGEVAPKPGR------GSGKKFKK 144
 
Name Accession Description Interval E-value
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 3-148 1.14e-67

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 201.61  E-value: 1.14e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   3 EACPCGLG-NYETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLEIVQ 81
Cdd:COG3012    4 SPCPCGSGkPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILA 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736576304  82 ANEKLDKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKDVWYFLDPTTDQKLTMkqpcicGSGKKFKQ 148
Cdd:COG3012   84 TEAGPDDDEGTVEFVARYREGGRAGRLHERSRFVREDGRWYYVDGEVAPKPGR------GSGKKFKK 144
PRK01752 PRK01752
YchJ family protein;
1-154 4.47e-60

YchJ family protein;


Pssm-ID: 179332  Cd Length: 156  Bit Score: 183.06  E-value: 4.47e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   1 MSEACPCGLGN-YETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLEI 79
Cdd:PRK01752   4 LLEACPCQSGKhYADCCGPFHLRQAFPETAEQLMRSRYAAYVLKNIDYIVETTVPSQQTLLDPAALQTWAENTTWLGLEI 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736576304  80 VqANEKLDKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKDVWYFLDPTTDQKlTMKQPCICGSGKKFKQCCAQFL 154
Cdd:PRK01752  84 L-AHESLTKIHSAVEFKAIFQGEEGEQAHHERSLFVKIDNRWYFVDPTVPLP-TMKQPCVCGSGKKFKHCCGGYL 156
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 28-125 4.43e-44

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 140.39  E-value: 4.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   28 TAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLEIVQANEKLDKTHALVEFKAHFHDGKQAQI 107
Cdd:pfam17775   1 TAEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGGQLQT 80

                          90
                  ....*....|....*...
gi 736576304  108 HHEVSHFVKVKDVWYFLD 125
Cdd:pfam17775  81 LHERSRFVREDGRWYYVD 98
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 137-151 1.88e-05

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 41.52  E-value: 1.88e-05
                          10
                  ....*....|....*
gi 736576304  137 PCICGSGKKFKQCCA 151
Cdd:TIGR04102  94 PCPCGSGKKYKKCCG 108
 
Name Accession Description Interval E-value
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 3-148 1.14e-67

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 201.61  E-value: 1.14e-67
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   3 EACPCGLG-NYETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLEIVQ 81
Cdd:COG3012    4 SPCPCGSGkPYADCCGPYHAGAAPAPTAEALMRSRYSAFVLGDADYLLATWHPSTRPALLRLEIEAWAPGTQWLGLEILA 83

                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736576304  82 ANEKLDKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKDVWYFLDPTTDQKLTMkqpcicGSGKKFKQ 148
Cdd:COG3012   84 TEAGPDDDEGTVEFVARYREGGRAGRLHERSRFVREDGRWYYVDGEVAPKPGR------GSGKKFKK 144
PRK01752 PRK01752
YchJ family protein;
1-154 4.47e-60

YchJ family protein;


Pssm-ID: 179332  Cd Length: 156  Bit Score: 183.06  E-value: 4.47e-60
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   1 MSEACPCGLGN-YETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLEI 79
Cdd:PRK01752   4 LLEACPCQSGKhYADCCGPFHLRQAFPETAEQLMRSRYAAYVLKNIDYIVETTVPSQQTLLDPAALQTWAENTTWLGLEI 83

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 736576304  80 VqANEKLDKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKDVWYFLDPTTDQKlTMKQPCICGSGKKFKQCCAQFL 154
Cdd:PRK01752  84 L-AHESLTKIHSAVEFKAIFQGEEGEQAHHERSLFVKIDNRWYFVDPTVPLP-TMKQPCVCGSGKKFKHCCGGYL 156
PRK00183 PRK00183
hypothetical protein; Provisional
 1-154 3.69e-45

hypothetical protein; Provisional


Pssm-ID: 166842  Cd Length: 157  Bit Score: 144.94  E-value: 3.69e-45
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   1 MSEA-CPCGLGN-YETCCQPLHQGKRiAQTAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLE 78
Cdd:PRK00183   1 MSVSiCPCGSGDlLDACCGRYHAGHP-APCAEALMRSRYSAYVLGLVDYLVATTLPAQQAGLDRAAIAAWSAQSTWLGLE 79

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 736576304  79 iVQANEKL--DKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKDVWYFLDPTTDQKLTMKQPCICGSGKKFKQCCAQFL 154
Cdd:PRK00183  80 -VESSEVLggQPEHAFVTFTARWHDADGEHSHRERSAFVQHQGRWYFIDPTVPLKAGRNDPCPCGSGQKFKKCCAPYL 156
UPF0225 pfam17775
UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.
 28-125 4.43e-44

UPF0225 domain; This entry represents an NTF2-like domain found in bacterial proteins.


Pssm-ID: 465498  Cd Length: 99  Bit Score: 140.39  E-value: 4.43e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   28 TAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADWSKSNQWLKLEIVQANEKLDKTHALVEFKAHFHDGKQAQI 107
Cdd:pfam17775   1 TAEALMRSRYSAYVLGDIDYLLATTHPDTRPALDRAELEEWAQSTKWLGLEILSTEAGPDDDEGFVEFKARYREGGQLQT 80

                          90
                  ....*....|....*...
gi 736576304  108 HHEVSHFVKVKDVWYFLD 125
Cdd:pfam17775  81 LHERSRFVREDGRWYYVD 98
PRK01617 PRK01617
hypothetical protein; Provisional
 1-152 4.10e-41

hypothetical protein; Provisional


Pssm-ID: 234966  Cd Length: 154  Bit Score: 134.77  E-value: 4.10e-41
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   1 MSEACPCGLG-NYETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKT--TALGQQDFLDmpAIADWSKSNQWLKL 77
Cdd:PRK01617   1 MSQLCPCGSAlEYSLCCQPYLSGEKVAPDPEHLMRSRYCAFVMKDADYLIKTwhPDCHAAAWRA--EIIAGFANTEWLGL 78

                         90       100       110       120       130       140       150
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 736576304  78 EIVQANEKLDKTHALVEFKAHFHDGKQAQIH--HEVSHFVKVKDVWYFLDPTTDQkLTMKQPCICGSGKKFKQCCAQ 152
Cdd:PRK01617  79 TVFEHTWGDADNEGFVEFVARFTEGGKTGRTaiIERSRFLKENGQWYYIDGTRPQ-FGRNDPCPCGSGKKFKKCCGQ 154
PRK02250 PRK02250
hypothetical protein; Provisional
 5-150 5.49e-35

hypothetical protein; Provisional


Pssm-ID: 179393 [Multi-domain]  Cd Length: 166  Bit Score: 119.60  E-value: 5.49e-35
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   5 CPCGLGN-YETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKTTALGQQDFLDMPAIADwSKSNQWLKLEIVQAN 83
Cdd:PRK02250   4 CPCGSTQtYSQCCEPIHLNHASAQTPEQLMRSRYSAHVLGLVDYVVETYHPSCNAEEQREGIAE-SIHSDWLKLEVIKTE 82

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304  84 EKLDKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKDVWYFLD-------PTTDQKL-----TMKQ----PCICGSGKKFK 147
Cdd:PRK02250  83 AGSTPNEGFVEFKAYFDEEGKRYCLEERSRFLKENGLWYYIDgtfpeeePEQDPRLnqsvsSLKQgrndPCICGSGKKFK 162


                 ...
gi 736576304 148 QCC 150
Cdd:PRK02250 163 KCC 165
PRK01842 PRK01842
hypothetical protein; Provisional
 3-125 8.19e-24

hypothetical protein; Provisional


Pssm-ID: 234985  Cd Length: 149  Bit Score: 90.25  E-value: 8.19e-24
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   3 EACPCGLG-----------NYETCCQPLHQGKRIAQTAEQLMRSRYSAFAKQEINYIQKTTALGQ--QDFLDMPAIADws 69
Cdd:PRK01842  12 DACPCGGAapgaaanarapRYAACCGRFIDGGAAAPTALELMRSRYSAYVLGATDYLRATWDPSTcpADLDADPAAAD-- 89

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 736576304  70 kSNQWLKLEIvQANEKLDKTHALVEFKAHFHDGKQAQIHHEVSHFVKVKD-VWYFLD 125
Cdd:PRK01842  90 -APRWLGLAI-KRHAQLDATHAEVEFVARYKVGGRAHRLHETSRFVRDEQgRWRYVD 144
PRK04233 PRK04233
hypothetical protein; Provisional
 2-125 1.36e-13

hypothetical protein; Provisional


Pssm-ID: 235261  Cd Length: 129  Bit Score: 63.41  E-value: 1.36e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 736576304   2 SEACPCGL-GNYETCCQPLHQGKrIAQTAEQLMRSRYSAFAKQEINYIQKT----TALGQQDFldmpaiaDWSKSNQWLK 76
Cdd:PRK04233   7 TDPCPCGRpADYARCCGPYHAGA-AAPDAETLMRARYSAYVRRDADYLLASwhpsTRPAELSL-------DEGGRTTWLG 78

                         90       100       110       120       130
                 ....*....|....*....|....*....|....*....|....*....|
gi 736576304  77 LEIVQANEKLDKThALVEFKAHFHDGKQAQIHH-EVSHFVKVKDVWYFLD 125
Cdd:PRK04233  79 LTVQRTLETGADT-AEVVFLARYRIGGGSAVRMtEHSRFVREDGRWYYLD 127
SWIM_PBPRA1643 TIGR04102
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ...
 137-151 1.88e-05

SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.


Pssm-ID: 200353 [Multi-domain]  Cd Length: 108  Bit Score: 41.52  E-value: 1.88e-05
                          10
                  ....*....|....*
gi 736576304  137 PCICGSGKKFKQCCA 151
Cdd:TIGR04102  94 PCPCGSGKKYKKCCG 108
YecA COG3318
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ...
 135-150 2.31e-05

Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];


Pssm-ID: 442547 [Multi-domain]  Cd Length: 45  Bit Score: 39.50  E-value: 2.31e-05
                         10
                 ....*....|....*.
gi 736576304 135 KQPCICGSGKKFKQCC 150
Cdd:COG3318   27 NDPCPCGSGKKYKKCC 42
SEC-C pfam02810
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ...
 134-151 2.98e-05

SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.


Pssm-ID: 460704 [Multi-domain]  Cd Length: 19  Bit Score: 39.00  E-value: 2.98e-05
                          10
                  ....*....|....*...
gi 736576304  134 MKQPCICGSGKKFKQCCA 151
Cdd:pfam02810   1 RNDPCPCGSGKKYKKCCG 18
SecA COG0653
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ...
 128-153 3.87e-05

Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];


Pssm-ID: 440418 [Multi-domain]  Cd Length: 876  Bit Score: 42.33  E-value: 3.87e-05
                         10        20
                 ....*....|....*....|....*.
gi 736576304 128 TDQKLTMKQPCICGSGKKFKQCCAQF 153
Cdd:COG0653  850 KGPKVGRNDPCPCGSGKKYKHCHGKL 875
PRK05590 PRK05590
hypothetical protein; Provisional
 137-150 1.25e-04

hypothetical protein; Provisional


Pssm-ID: 235521  Cd Length: 166  Bit Score: 39.95  E-value: 1.25e-04
                         10
                 ....*....|....
gi 736576304 137 PCICGSGKKFKQCC 150
Cdd:PRK05590 150 PCPCGSGKKYKKCC 163
PRK12904 PRK12904
preprotein translocase subunit SecA; Reviewed
 136-152 1.99e-04

preprotein translocase subunit SecA; Reviewed


Pssm-ID: 237259 [Multi-domain]  Cd Length: 830  Bit Score: 40.45  E-value: 1.99e-04
                         10
                 ....*....|....*..
gi 736576304 136 QPCICGSGKKFKQCCAQ 152
Cdd:PRK12904 812 DPCPCGSGKKYKHCHGR 828
PRK10396 PRK10396
hypothetical protein; Provisional
 137-150 2.53e-04

hypothetical protein; Provisional


Pssm-ID: 236680 [Multi-domain]  Cd Length: 221  Bit Score: 39.73  E-value: 2.53e-04
                         10
                 ....*....|....
gi 736576304 137 PCICGSGKKFKQCC 150
Cdd:PRK10396 206 PCPCGSGKKFKQCC 219
YchJ COG3012
Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function ...
 136-154 7.33e-04

Uncharacterized conserved protein YchJ, contains N- and C-terminal SEC-C domains [Function unknown];


Pssm-ID: 442249  Cd Length: 144  Bit Score: 37.52  E-value: 7.33e-04
                         10
                 ....*....|....*....
gi 736576304 136 QPCICGSGKKFKQCCAQFL 154
Cdd:COG3012    4 SPCPCGSGKPYADCCGPYH 22
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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