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Conserved domains on  [gi|736576567|ref|WP_034587939|]
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MULTISPECIES: dodecin family protein [unclassified Acinetobacter]

Protein Classification

dodecin family protein( domain architecture ID 10007271)

dodecin family protein is a small flavin-binding protein that may function as a storage protein that sequesters various flavins and other cofactors, thereby protecting the cell against undesirable reactions mediated by the free cofactors

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3360 COG3360
Flavin-binding protein dodecin [General function prediction only];
1-66 1.28e-24

Flavin-binding protein dodecin [General function prediction only];


:

Pssm-ID: 442588  Cd Length: 68  Bit Score: 86.29  E-value: 1.28e-24
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736576567  1 MAIAKVVEVNSSSTKSFEDAIQSGITKVTETVKNVQGAWINEQKVVVKENKITEYRVNLKISFLVE 66
Cdd:COG3360   2 MHVYKVIELVGSSPKSWEDAVQNAIARASKTLRNIRWFEVVEQRGHVEDGKIAEYQVNLKVGFRLE 67
 
Name Accession Description Interval E-value
COG3360 COG3360
Flavin-binding protein dodecin [General function prediction only];
1-66 1.28e-24

Flavin-binding protein dodecin [General function prediction only];


Pssm-ID: 442588  Cd Length: 68  Bit Score: 86.29  E-value: 1.28e-24
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736576567  1 MAIAKVVEVNSSSTKSFEDAIQSGITKVTETVKNVQGAWINEQKVVVKENKITEYRVNLKISFLVE 66
Cdd:COG3360   2 MHVYKVIELVGSSPKSWEDAVQNAIARASKTLRNIRWFEVVEQRGHVEDGKIAEYQVNLKVGFRLE 67
Dodecin pfam07311
Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and ...
 3-63 1.28e-18

Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.


Pssm-ID: 462142  Cd Length: 62  Bit Score: 70.86  E-value: 1.28e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736576567   3 IAKVVEVNSSSTKSFEDAIQSGITKVTETVKNVQGAWINEQKVVVKENKITEYRVNLKISF 63
Cdd:pfam07311  1 VYKVIELVGSSPKSWEDAIQNAIARASKTLRNIRWFEVVEQRGHVEDGKIAHYQVTLKVGF 61
 
Name Accession Description Interval E-value
COG3360 COG3360
Flavin-binding protein dodecin [General function prediction only];
1-66 1.28e-24

Flavin-binding protein dodecin [General function prediction only];


Pssm-ID: 442588  Cd Length: 68  Bit Score: 86.29  E-value: 1.28e-24
                        10        20        30        40        50        60
                ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 736576567  1 MAIAKVVEVNSSSTKSFEDAIQSGITKVTETVKNVQGAWINEQKVVVKENKITEYRVNLKISFLVE 66
Cdd:COG3360   2 MHVYKVIELVGSSPKSWEDAVQNAIARASKTLRNIRWFEVVEQRGHVEDGKIAEYQVNLKVGFRLE 67
Dodecin pfam07311
Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and ...
 3-63 1.28e-18

Dodecin; Dodecin is a flavin-binding protein,found in several bacteria and few archaea and represents a stand-alone version of the SHS2 domain. It most closely resembles the SHS2 domains of FtsA and Rpb7p, and represents a single domain small-molecule binding form.


Pssm-ID: 462142  Cd Length: 62  Bit Score: 70.86  E-value: 1.28e-18
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 736576567   3 IAKVVEVNSSSTKSFEDAIQSGITKVTETVKNVQGAWINEQKVVVKENKITEYRVNLKISF 63
Cdd:pfam07311  1 VYKVIELVGSSPKSWEDAIQNAIARASKTLRNIRWFEVVEQRGHVEDGKIAHYQVTLKVGF 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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