MULTISPECIES: outer membrane beta-barrel protein [Elizabethkingia]
Protein Classification
porin family protein( domain architecture ID 229388)
porin family protein is a member of a large superfamily consisting of classical (gram-negative ) porins which are non-specific channels for small hydrophillic molecules, maltoporin-like channels which have specificities for various sugars, and ligand-gated protein channels which cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force
List of domain hits
| Name | Accession | Description | Interval | E-value | ||||
| OM_channels super family | cl21487 | Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in ... |
12-208 | 6.22e-03 | ||||
Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative ) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20), which associate as trimers. Maltoporin-like channels have specificities for various sugars and form 18 beta-stranded barrels (18,22), which associate as trimers. Ligand-gated protein channels cooperate with a TonB associated inner membrane complex to actively transport ligands via the proton motive force and they form monomeric, (22,24) barrels. The 150-200 N-terminal residues form a plug that blocks the channel from the periplasmic end. The actual alignment was detected with superfamily member pfam13568: Pssm-ID: 473880 Cd Length: 175 Bit Score: 36.23 E-value: 6.22e-03
|
||||||||
| Name | Accession | Description | Interval | E-value | ||||
| OMP_b-brl_2 | pfam13568 | Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ... |
12-208 | 6.22e-03 | ||||
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold. Pssm-ID: 433316 Cd Length: 175 Bit Score: 36.23 E-value: 6.22e-03
|
||||||||
| Name | Accession | Description | Interval | E-value | ||||
| OMP_b-brl_2 | pfam13568 | Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer ... |
12-208 | 6.22e-03 | ||||
Outer membrane protein beta-barrel domain; This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold. Pssm-ID: 433316 Cd Length: 175 Bit Score: 36.23 E-value: 6.22e-03
|
||||||||
| Blast search parameters | ||||
|
