TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
165-388
4.34e-43
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.
:
Pssm-ID: 433039 Cd Length: 204 Bit Score: 153.67 E-value: 4.34e-43
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
492-624
1.40e-15
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.
The actual alignment was detected with superfamily member pfam15615:
Pssm-ID: 434814 [Multi-domain] Cd Length: 143 Bit Score: 73.93 E-value: 1.40e-15
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
165-388
4.34e-43
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.
Pssm-ID: 433039 Cd Length: 204 Bit Score: 153.67 E-value: 4.34e-43
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
492-624
1.40e-15
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.
Pssm-ID: 434814 [Multi-domain] Cd Length: 143 Bit Score: 73.93 E-value: 1.40e-15
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing ...
165-388
4.34e-43
TerB N-terminal domain; The TerB_N domain is found N-terminal to TerB, and TerB_C containing proteins. It has a predominantly alpha-helical structure and contains an absolutely conserved glutamate. The presence of a conserved acidic residue suggests that it might chelate metal like TerB. These proteins occur in a two-gene operon containing an AAA+ ATPase and SF-II DNA helicase suggesting a role in stress-response or phage defence.
Pssm-ID: 433039 Cd Length: 204 Bit Score: 153.67 E-value: 4.34e-43
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain ...
492-624
1.40e-15
TerB-C domain; TerB-C occurs C-terminal of TerB in TerB-N containing proteins. This domain displays multiple conserved acidic residues (TerBC). The presence of conserved acidic residues in both TerB-N and TerB-C suggests that they, like the TerB domain, might also chelate metals. These two domains may also occur together in the same protein independently of TerB.
Pssm-ID: 434814 [Multi-domain] Cd Length: 143 Bit Score: 73.93 E-value: 1.40e-15
Database: CDSEARCH/cdd Low complexity filter: no Composition Based Adjustment: yes E-value threshold: 0.01
References:
Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
of the residues that compose this conserved feature have been mapped to the query sequence.
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Functional characterization of the conserved domain architecture found on the query.
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if a domain or superfamily has been annotated with functional sites (conserved features),
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The table lists conserved domains identified on the query sequence. Click on the plus sign (+) on the left to display full descriptions, alignments, and scores.
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(labeled illustration) Standard Display shows only the best scoring domain model from each source, in each hit category listed below for each region on the query sequence.
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