|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
1-317 |
6.35e-177 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 492.55 E-value: 6.35e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 1 MIKRNLPLMITLGVFILGYLYCLTQFPGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAI 80
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 81 GFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPIDHPLYDTLSGLAWTIPGGG 160
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 161 RLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 737931424 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRALTVLWEN 317
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-311 |
6.11e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 253.88 E-value: 6.11e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 2 IKRNLPLMITLGVFILGYLYCLTQFPGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIG 81
Cdd:COG1172 12 LRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 82 FWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPIDHPLYDTLSGLAWtipggG 160
Cdd:COG1172 92 ALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGgRPISGLPDAFRALGQGSL-----L 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 161 RLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:COG1172 167 GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAG 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 737931424 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQRAL 311
Cdd:COG1172 247 SGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDRLR 316
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
42-308 |
1.14e-68 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 215.35 E-value: 1.14e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 42 NAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITL 121
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 122 AGMFFLRGVSYLVSEESIPIDHPlydTLSGLAWTIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANL 201
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP---PLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 202 MGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLIQTY 281
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 737931424 282 INFDGtLSSWWTKIAIGILLFIFIALQ 308
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
35-278 |
7.61e-39 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 141.06 E-value: 7.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 35 ICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKI 114
Cdd:NF040906 32 VTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 115 PAFIITLAGMFFLRGVSYLVSE-ESIPIDHPLYDTLS------------------------------------------- 150
Cdd:NF040906 112 PAFIVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISsgflpdlfggtglhlltlllgvlaaaalvwsqlrgrrrrikyg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 151 ---------------------GLAWTIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRST 209
Cdd:NF040906 192 levepmalfiaklvliaaailFFTYLLASYRGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRV 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 737931424 210 IVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLI 278
Cdd:NF040906 272 TFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVL 340
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-303 |
8.48e-22 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 92.71 E-value: 8.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 37 NILTDNAFLGIVAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIP 115
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 116 AFIITLAGMFFLRGVSYLVSEE------SIPIDHPLYDTLSGLAWTIPGGGRLsamglLMLLVVILGIFLAHRTRFGNQV 189
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggegGTSGITGPSGFPGAFLSFAFAFIFL-----LALLLVLALWLLLYRTKFGRAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 190 YAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYA-LAGVGVELDAIASVVIGGTllsggvGTVLGT 268
Cdd:pfam02653 159 RAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGV 232
|
250 260 270
....*....|....*....|....*....|....*
gi 737931424 269 LFGVGIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:pfam02653 233 VIGSLIIGLVQSLGLGALGSPPELSLLVLGALLIL 267
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
76-303 |
7.43e-06 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 46.85 E-value: 7.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 76 LAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLI---------DALkIPAFIITLAGMFFLRGVsylVSEESIPIDHPly 146
Cdd:TIGR03409 52 LFSSPGLADLYLLIAIPLAFLVSALLGALIERTVirhlygrplDTL-LATWGISLILQQAVRSI---FGAPNVPVTAP-- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 147 DTLSGlAWTIPGG-----GRLSAMGLLMLLVVILGIFLaHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLA 221
Cdd:TIGR03409 126 EWLSG-GLEITGAlslpyNRLFIIVLALAVLLALALLL-YRTRLGLRVRAVTQNRSMAAALGINTRRVDALTFALGSGIA 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 222 TLAGIVFSIYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFGVGIQGLIQTYINFDGTLSSWWTKIAIGILL 301
Cdd:TIGR03409 204 GVAGVALTLIGNVGPTL-GQLYIVDSFLVVVF------GGVGSLWGTVVAAFGLGVLNKILEYFTGASLAKVLVLVLIIL 276
|
..
gi 737931424 302 FI 303
Cdd:TIGR03409 277 FL 278
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| PRK11618 |
PRK11618 |
inner membrane ABC transporter permease protein YjfF; Provisional |
1-317 |
6.35e-177 |
|
inner membrane ABC transporter permease protein YjfF; Provisional
Pssm-ID: 183235 [Multi-domain] Cd Length: 317 Bit Score: 492.55 E-value: 6.35e-177
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 1 MIKRNLPLMITLGVFILGYLYCLTQFPGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAI 80
Cdd:PRK11618 1 MIKRNLPLMITIGVFVLGYLFCLVQFPGFASTRVICNLLTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKLI 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 81 GFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPIDHPLYDTLSGLAWTIPGGG 160
Cdd:PRK11618 81 GDYGWSPLLAFPLVLVMGAAFGAFMGALIHYLKLPAFIVTLAGMFLARGVSFLVSEESIPINHPFYDTLSSLAWKLPGGG 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 161 RLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:PRK11618 161 RLSAMALIMLAVVAIGIFLAHRTRFGNNVYAIGGNATSANLMGIPVRRTTIRIYMLSGFLATLAGIVFSLYTSAGYALAA 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 737931424 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLIQTYINFDGTLSSWWTKIAIGILLFIFIALQRALTVLWEN 317
Cdd:PRK11618 241 VGVELDAIAAVVIGGTLLTGGVGTVLGTLFGVLIQGLIQTYITFDGTLSSWWTKIVIGILLFVFIALQRGLTVLAEN 317
|
|
| AraH |
COG1172 |
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component ... |
2-311 |
6.11e-83 |
|
Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 440785 Cd Length: 322 Bit Score: 253.88 E-value: 6.11e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 2 IKRNLPLMITLGVFILGYLYCLTQFPGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIG 81
Cdd:COG1172 12 LRRLLPELGLLLALVLLLVVFSILSPGFLSPGNLSNILRQAAILGILALGMTLVIITGGIDLSVGSVVALSGVVAALLLV 91
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 82 FWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPIDHPLYDTLSGLAWtipggG 160
Cdd:COG1172 92 ALGLPILLAILLALLVGALLGLLNGLLVAKLRIPPFIVTLGTMFIARGLALLLTGgRPISGLPDAFRALGQGSL-----L 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 161 RLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAG 240
Cdd:COG1172 167 GIPVPVLIALVVALVAWFLLRRTRFGRYIYAVGGNEEAARLSGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPNAG 246
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 737931424 241 VGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQRAL 311
Cdd:COG1172 247 SGYELDAIAAVVIGGTSLTGGRGSVLGTLLGALILGVLNNGLNLLG-VSSYWQQIVKGAIILLAVLLDRLR 316
|
|
| TM_PBP1_transp_AraH_like |
cd06579 |
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the ... |
42-308 |
1.14e-68 |
|
Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.
Pssm-ID: 119321 [Multi-domain] Cd Length: 263 Bit Score: 215.35 E-value: 1.14e-68
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 42 NAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITL 121
Cdd:cd06579 1 AAVLGILALGMTLVIITGGIDLSVGSVAALSAVVAALLLVNAGLPIPLAILAALAVGALIGLLNGLLVAYLRIPPFIVTL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 122 AGMFFLRGVSYLVSEESIPIDHPlydTLSGLAWTIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANL 201
Cdd:cd06579 81 GTMFILRGLALLITGGRPISGLP---PLFSFFLGGGLILGIPVPVLIALAVALVAWFLLRRTRFGRYLYAVGGNPEAARL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 202 MGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLIQTY 281
Cdd:cd06579 158 SGINVRRVKILAYVLSGLLAGLAGILLAARLGSAQPTAGNGYELDAIAAVVLGGTSLTGGRGSVLGTLLGALLLGVLNNG 237
|
250 260
....*....|....*....|....*..
gi 737931424 282 INFDGtLSSWWTKIAIGILLFIFIALQ 308
Cdd:cd06579 238 LNLLG-VSSFWQQIVKGAILLLAVALD 263
|
|
| XylH |
COG4214 |
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; |
4-279 |
2.82e-53 |
|
ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism];
Pssm-ID: 443360 [Multi-domain] Cd Length: 393 Bit Score: 179.54 E-value: 2.82e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 4 RNLPLMITLgVFILGYLYCLTQfPGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFW 83
Cdd:COG4214 23 RSLGMIIAL-VVIWIVFQILTG-GTFLTPRNLSNLLLQNSYIGILAIGMVLVILLGHIDLSVGSVSGFVGAVAAVLMVNW 100
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 84 GLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPIDHP---------LYDTLSGLA 153
Cdd:COG4214 101 GLPWWLAILAALLVGALIGAWQGFWVAYVGIPSFIVTLAGMLAFRGLTLLVLGgGTIAPFDPtfqaigngfLPDILGTLS 180
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 154 WTIPGGG--------------RLSA------------------------------------MGLLMLLVVILGIFLAHRT 183
Cdd:COG4214 181 WVLGAVAvaayvalqlrsrrrRRRYglpveplwlfvlklallavlilgavyllnsyrgipiVVLILLVLVVVYTFVLTRT 260
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 184 RFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVG 263
Cdd:COG4214 261 VFGRHIYAVGGNPEAARLSGINVRRVTFSVFVNMGVLAALAGIVFAARLNSATPSAGTGFELDAIAAAVIGGTSLFGGVG 340
|
330
....*....|....*.
gi 737931424 264 TVLGTLFGVGIQGLIQ 279
Cdd:COG4214 341 TVYGAVIGALVMGSLN 356
|
|
| rbsC |
PRK09512 |
ribose ABC transporter permease protein; Reviewed |
27-305 |
1.14e-46 |
|
ribose ABC transporter permease protein; Reviewed
Pssm-ID: 181922 [Multi-domain] Cd Length: 320 Bit Score: 160.27 E-value: 1.14e-46
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 27 PGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFwGLSPLVAFPLVLVMGCAFGAFMG 106
Cdd:PRK09512 37 PNFFTVNNLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGI-EVNALVAVPAALALGAAIGAVTG 115
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 107 WLIDALKIPAFIITLAGMFFLRGVSyLVSEESIPIDHPLYDTLSGLAWTipGGGRLSAMGL---LMLLVVILGIFLAHRT 183
Cdd:PRK09512 116 VIVAKGKVQAFIATLVMMLLLRGVT-MVYTDGSPINTGFTDNADLFGWF--GIGRPLGIPTpvwIMAIVFLAAWYMLHHT 192
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 184 RFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVG 263
Cdd:PRK09512 193 RLGRYIYALGGNEAATRLSGINVNKVKIIVYALCGLLAALAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKG 272
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 737931424 264 TVLGTLFGVGIQGLIQTYINFDGtLSSWWTKI--AIGILLFIFI 305
Cdd:PRK09512 273 RIVGTLIGALILGFLNNGLNLLG-VSSYYQMIvkAVVILLAVLV 315
|
|
| COG4158 |
COG4158 |
Predicted ABC-type sugar transport system, permease component [General function prediction ... |
27-310 |
3.88e-44 |
|
Predicted ABC-type sugar transport system, permease component [General function prediction only];
Pssm-ID: 443324 Cd Length: 334 Bit Score: 154.32 E-value: 3.88e-44
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 27 PGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVfLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMG 106
Cdd:COG4158 48 PNFLTVQNLSNIARQASINIVLAAGMTFVILTGGIDLSVGSILAASAV-VAVLVSLLPGLGLLGIPAALLVGLLFGLING 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 107 WLIDALKIPAFIITLAGMFFLRGVSYL------VSEESIPIDHPLYDTLSGLAWTIpgggrlsamgLLMLLVVILGIFLA 180
Cdd:COG4158 127 LLIAFLKLPPFIVTLGSLTALRGAARLlangttVFNPDLPFAWIGNGYLLGIPWLV----------VIALAVVLASWFIL 196
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 181 HRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFS--IYTqAGYALAGVGVELDAIASVVIGGTLL 258
Cdd:COG4158 197 RRTVLGVHIYAVGGNAQAARLTGIKVWRVLLFVYAVSGLLAGLGGVMSAarLYA-ANGLQLGQGYELDAIAAVILGGTSF 275
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|..
gi 737931424 259 SGGVGTVLGTLFGVGIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQRA 310
Cdd:COG4158 276 VGGIGSIWGTLIGALIIAVLNNGLILLG-VSDFWQFIIKGLVIIIAVALDRY 326
|
|
| GguB |
NF040906 |
sugar ABC transporter permease; |
35-278 |
7.61e-39 |
|
sugar ABC transporter permease;
Pssm-ID: 468841 [Multi-domain] Cd Length: 375 Bit Score: 141.06 E-value: 7.61e-39
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 35 ICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKI 114
Cdd:NF040906 32 VTNLILQNSYILILAIGMLLVIIAGHIDLSVGSVVAFVGAVAAVLMVNWGMPWWLAVLLCLLVGALIGAWQGFWVAYVGI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 115 PAFIITLAGMFFLRGVSYLVSE-ESIPIDHPLYDTLS------------------------------------------- 150
Cdd:NF040906 112 PAFIVTLAGMLVFRGLTLVVLGgQSIGPFPDGFQKISsgflpdlfggtglhlltlllgvlaaaalvwsqlrgrrrrikyg 191
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 151 ---------------------GLAWTIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRST 209
Cdd:NF040906 192 levepmalfiaklvliaaailFFTYLLASYRGLPNVLIILGVLILVYSFVTNRTVIGRHIYAVGGNEKAAKLSGIKTKRV 271
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 737931424 210 IVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLI 278
Cdd:NF040906 272 TFLVFVNMGVLAALAGLVFAARLNSATPKAGNGFELDAIAACFIGGASASGGVGTVVGAIIGALVMGVL 340
|
|
| araH |
PRK11285 |
L-arabinose transporter permease protein; Provisional |
12-283 |
1.85e-33 |
|
L-arabinose transporter permease protein; Provisional
Pssm-ID: 183076 [Multi-domain] Cd Length: 333 Bit Score: 125.95 E-value: 1.85e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 12 LGVFILGYLYCLTQFPGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGlSPLVAF 91
Cdd:PRK11285 33 LVVFAVLFIACSLFVPNFASFINMKGLGLAISMIGMVACTMLFCLASGDFDLSVASVVAFAGVVTAVVINATE-SLWLGV 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 92 PLVLVMGCAFGAFMGWLIDALKIPAFIITLAGMFFLRGVSYLVSE-ESIPIDHPLYDTLSGLAWTipgggRLSAMGLLML 170
Cdd:PRK11285 112 AAGLLLGAAVGLVNGFVIARLKINALITTLATMQIVRGLAYIISDgKAVGISDERFFALGYANFF-----GVPAPIWLTV 186
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 171 LVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIAS 250
Cdd:PRK11285 187 ACFVVFGFLLNKTTFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSALAGVILASRMTSGQPMTSIGFELIVISA 266
|
250 260 270
....*....|....*....|....*....|...
gi 737931424 251 VVIGGTLLSGGVGTVLGTLFGVGIQGLIQTYIN 283
Cdd:PRK11285 267 CVLGGVSLKGGIAKISGVVAGVLILGTVENAMN 299
|
|
| PRK09699 |
PRK09699 |
D-allose ABC transporter permease; |
29-309 |
4.50e-28 |
|
D-allose ABC transporter permease;
Pssm-ID: 182035 [Multi-domain] Cd Length: 312 Bit Score: 111.02 E-value: 4.50e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 29 FASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIgFWGLSPLVAFPL-VLVMGCAFGAFMGW 107
Cdd:PRK09699 33 FLTTNNITQIFVQSSVTVLIGMGEFFAILVAGIDLSVGAILALSGMVTAKLM-LAGVDPFLAALIgGVLVGGALGAINGC 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 108 LIDALKIPAFIITLAGMFFLRGVSYLVSEESiPIDHPLYDTLSGLAWTIPGggrLSAMGLLMLLVVILGIFLAHRTRFGN 187
Cdd:PRK09699 112 LVNWTGLHPFIITLGTNAIFRGITLVISDAN-SVYGFSFDFVNFFAASVIG---IPVPVIFSLIVALILWFLTTRMRLGR 187
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 188 QVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLG 267
Cdd:PRK09699 188 NIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLAGVVSTARLGAAEPLAGMGFETYAIASAIIGGTSFFGGKGRIFS 267
|
250 260 270 280
....*....|....*....|....*....|....*....|..
gi 737931424 268 TLFGVGIQGLIQTYINFDGtLSSWWTKIAIGILLFIFIALQR 309
Cdd:PRK09699 268 VVIGGLIIGTINNGLNILQ-VQTYYQLVVMGGLIIAAVALDR 308
|
|
| PRK15432 |
PRK15432 |
autoinducer 2 ABC transporter permease LsrC; Provisional |
27-321 |
4.99e-25 |
|
autoinducer 2 ABC transporter permease LsrC; Provisional
Pssm-ID: 185330 [Multi-domain] Cd Length: 344 Bit Score: 103.27 E-value: 4.99e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 27 PGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFwGLSPLVAFPLVLVMGCAFGAFMG 106
Cdd:PRK15432 29 RQYLSLQTLTMVFSSAQILILLAIGATLVMLTRNIDVSVGSITGLCAVLVGMLLNA-GYSLPVACLATLLLGLLAGFFNG 107
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 107 WLIDALKIPAFIITLAGMFFLRGVSYLVSE----ESIPIDhplYDTLSGLAWTipgggRLSAMGLLMLLVVILGIFLAHR 182
Cdd:PRK15432 108 VLVAWLRIPAIVATLGTLGLYRGIMLLWTGgkwiEGLPAE---LKQLSAPILL-----GISPIGWLTLILILAMAWLLAK 179
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 183 TRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSiyTQAGYA--LAGVGVELDAIASVVIGGTLLSG 260
Cdd:PRK15432 180 TAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMAALAGIVFA--SQIGFIpnQTGTGLEMKAIAACVLGGISLLG 257
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 737931424 261 GVGTVLGTLFGVGIQGLIQTYINFdGTLSSWWTKIAIGILLFIFIALQRALTVLWENRQNA 321
Cdd:PRK15432 258 GSGTIIGAVLGAYFLTQIDSVLVL-LRIPAWWNDFIAGLVLLGVLVFDGRLRCALERNLRR 317
|
|
| mglC |
PRK09478 |
galactose/methyl galactoside ABC transporter permease MglC; |
25-307 |
2.21e-24 |
|
galactose/methyl galactoside ABC transporter permease MglC;
Pssm-ID: 181892 [Multi-domain] Cd Length: 336 Bit Score: 101.30 E-value: 2.21e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 25 QFPGFASTRVICNILTDNAFLGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAK-------AIGFWGLSPLVAFPLVLVM 97
Cdd:PRK09478 32 QDPTFLSLLNLSNILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATllqsmdnANKVFPELATMPIALVILI 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 98 GCAFGAFMGWL----IDALKIPAFIITLAGMFFLRGVS--YLVSEESIPIDHpLYDTLSGLA--WTIPGGGRLSAMGLLM 169
Cdd:PRK09478 112 VCAIGAVIGLIngliIAYLNVTPFIATLGTMIIVYGINslYYDFVGASPISG-FDSGFSTFAqgFVALGSFRLSYITFYA 190
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 170 LLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIA 249
Cdd:PRK09478 191 LIAVAFVWVLWNKTRFGKNIFAIGGNPEAAKVSGVNVPLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIA 270
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 737931424 250 SVVIGGTLLSGGVGTVLGTLFGVgiqgLIQTYINFDGT---LSSWWTKIAIGILLFIFIAL 307
Cdd:PRK09478 271 ACVVGGVSFSGGVGTVIGVVTGV----IIFTVINYGLTyigVNPYWQYIIKGAIIIFAVAL 327
|
|
| BPD_transp_2 |
pfam02653 |
Branched-chain amino acid transport system / permease component; This is a large family mainly ... |
37-303 |
8.48e-22 |
|
Branched-chain amino acid transport system / permease component; This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Pssm-ID: 396977 [Multi-domain] Cd Length: 269 Bit Score: 92.71 E-value: 8.48e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 37 NILTDNAFLGIVAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIP 115
Cdd:pfam02653 4 NILTLASIYAIAALGLTLIYgIAGVINLGHGGFMMLGAYVAAMLLNLLGPGLWLALPVGILVGAAVGLLIGILTLRLKIN 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 116 AFIITLAGMFFLRGVSYLVSEE------SIPIDHPLYDTLSGLAWTIPGGGRLsamglLMLLVVILGIFLAHRTRFGNQV 189
Cdd:pfam02653 84 EVIITLLLNLAALGLALFLVTGilggegGTSGITGPSGFPGAFLSFAFAFIFL-----LALLLVLALWLLLYRTKFGRAL 158
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 190 YAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYA-LAGVGVELDAIASVVIGGTllsggvGTVLGT 268
Cdd:pfam02653 159 RAVGENEEAARAAGINVKKLKLLTFVISGALAGLAGALLALYTGVVPPsNFGVGLGLDAIAAVVLGGA------GSPIGV 232
|
250 260 270
....*....|....*....|....*....|....*
gi 737931424 269 LFGVGIQGLIQTYINFDGTLSSWWTKIAIGILLFI 303
Cdd:pfam02653 233 VIGSLIIGLVQSLGLGALGSPPELSLLVLGALLIL 267
|
|
| LivH |
COG0559 |
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport ... |
43-307 |
2.05e-17 |
|
Branched-chain amino acid ABC-type transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 440325 [Multi-domain] Cd Length: 290 Bit Score: 80.88 E-value: 2.05e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 43 AFLGIVAVGMTFV-ILSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLI-----DALKIPA 116
Cdd:COG0559 16 SIYALIALGLTLIfGVMGVINFAHGEFVMLGAYVAYTLATLLGLPLWLALLLAVLVAALLGVLLERLVirplrGAPPLAL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 117 FIITLAGMFFLRGVSYLV-SEESIPIDHPLYDTLSGLAWTIPGGgRLSAMGLLMLLVVILGIFLaHRTRFGNQVYAIGGN 195
Cdd:COG0559 96 LLATIGLSLVLQGLVLLIfGADPRSFPALLSGSVELGGVSIPAY-RLFIIVVALVLLAALWLFL-RRTRLGLAMRAVAQN 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 196 ATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFGVGIQ 275
Cdd:COG0559 174 REAARLMGINVDRVIALTFALGAALAGLAGVLLAPIYSVSPTM-GFLLGLKAFAAVVL------GGLGSIPGAVVGGLLL 246
|
250 260 270
....*....|....*....|....*....|..
gi 737931424 276 GLIQTYINFdgTLSSWWTKIAIGILLFIFIAL 307
Cdd:COG0559 247 GLAESLGAA--YLPSGYKDVVAFVLLILVLLV 276
|
|
| PRK15038 |
PRK15038 |
autoinducer 2 ABC transporter permease LsrD; |
45-319 |
4.06e-17 |
|
autoinducer 2 ABC transporter permease LsrD;
Pssm-ID: 184998 Cd Length: 330 Bit Score: 80.64 E-value: 4.06e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 45 LGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAkAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAGM 124
Cdd:PRK15038 45 IGIVALPLTMVIVSGGIDISFGSTIGLCAIALG-VLFQSGVPMPLAILLTLLLGALCGLINAGLIIYTGVNPLVITLGTL 123
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 125 FFLRGVSYLVSEESIPIDhplYDTLSGLAWTIPGGGRLSAMGL-----LMLLVVILGIFLAHRTRFGNQVYAIGGNATSA 199
Cdd:PRK15038 124 YLFGGSALLLSGMAGATG---YEGIGGFPMAFTDFANLDVLGLpvpliIFLICLLVFWLLMHRTHAGRNVFLIGQSPRVA 200
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 200 NLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVGIQGLIQ 279
Cdd:PRK15038 201 LYSAIPVNRTLCALYAMTGLASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTALAVLLVGYLQ 280
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 737931424 280 TYINFDGTLSSWWTKIAIGILLFIF----IALQRALTVLWENRQ 319
Cdd:PRK15038 281 QGLQMAGVPNQISSALSGALLIVVVvgrsVSLHRHQIKEWLARR 324
|
|
| TM_PBP1_LivH_like |
cd06582 |
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two ... |
43-307 |
8.29e-15 |
|
Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119324 [Multi-domain] Cd Length: 272 Bit Score: 73.23 E-value: 8.29e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 43 AFLGIVAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLI-----DALKIPA 116
Cdd:cd06582 6 AIYALIALGLTLIFgVTGVINFAHGEFYMLGAYVAYTLLVALGLPFWLALLLALLVAALLGVLLERLVlrplrGAPLLTL 85
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 117 FIITLAGMFFLRGVSYLVSEESIPIDHPLYDTLSGLAWTIPGGGRLSAMGLLMLLVVILGIFLAhRTRFGNQVYAIGGNA 196
Cdd:cd06582 86 LITFGGLLILLQGLLLIFGGDPRVPPPPLLSGSVELGGVTIPPYRLFIIAVALVLLAALYLFLR-RTRLGRAIRAVAQNP 164
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 197 TSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFGVGIQG 276
Cdd:cd06582 165 EAARLLGINVRRVFALTFALGAALAGLAGVLLAPITGVSPTM-GLLLLLKAFAAVVL------GGLGSIPGAVVGGLLLG 237
|
250 260 270
....*....|....*....|....*....|.
gi 737931424 277 LIQTYINfdGTLSSWWTKIAIGILLFIFIAL 307
Cdd:cd06582 238 LAESLAA--AYLSSGYKDAVAFVLLILVLLV 266
|
|
| TM_PBP1_branched-chain-AA_like |
cd06574 |
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette ... |
45-278 |
1.61e-13 |
|
Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) and LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine. Included in this group are proteins from transport systems that contain a single TM which homodimerizes to generate the transmembrane pore; for example E. coli RbsC, AlsC, and MglC, the TMs of the high affinity ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also to be involved in low affinity ribose transport.
Pssm-ID: 119320 [Multi-domain] Cd Length: 266 Bit Score: 69.61 E-value: 1.61e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 45 LGIVAVGMTFVI-LSGGIDLSVGSVIAFTGVFLAKAIGFwGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAG 123
Cdd:cd06574 4 YAILALGVYIVFrILGFPDLTVDGSFPLGAAVAAILIVA-GYNPWLALIAAILAGAAAGLVTGFLHTRLKINGLLAGILI 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 124 MFFLRGVSYLVSEESI--PIDHPLYDTLSGLAWtIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANL 201
Cdd:cd06574 83 MIGLYSINLRIMGGPNipLGTRDTLLGLLLLFG-ISGTLSIPVVLLLIVLLVLFLVIWFLRTKLGLAMRATGDNPDMARS 161
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 737931424 202 MGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLsgGVGTVLGTLFGVGIQGLI 278
Cdd:cd06574 162 LGINVDRTRILGLVISNALAALGGALYAQYQGFADVNMGIGTGVIGLAAVIIGGAIV--GRRTIKASILGVIIGAIL 236
|
|
| TM_PBP1_LivM_like |
cd06581 |
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two ... |
43-305 |
2.48e-11 |
|
Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transporting branched-chain AAs including leucine, isoleucine and valine, the E. coli LIV-1/LS transporter is involved in the uptake of the aromatic AA, phenylalanine.
Pssm-ID: 119323 [Multi-domain] Cd Length: 268 Bit Score: 63.23 E-value: 2.48e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 43 AFLGIVAVGMTFVILSGGIdLSVGSViAFTGV---FLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAF-I 118
Cdd:cd06581 2 LIYAILALGLNLLLGYAGQ-LSLGHA-AFFGIgayTAALLATRLGLPFWLALLAAGLVAALVGLLLGLPALRLRGVYFaI 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 119 ITLAGMFFLRGVsyLVSEESI---PIDHPLYDTLSGLAWTIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGN 195
Cdd:cd06581 80 ATLAFAEIVRLL--ALNWSSLtggSNGLSGIPPPLLGGLLLSSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIREN 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 196 ATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQ-AGYALAGVGVELDAIASVVIggtllsGGVGTVLGTLFGVGI 274
Cdd:cd06581 158 EVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGfVSPESFGFALSIELLLMVVL------GGLGSLLGPVLGAAL 231
|
250 260 270
....*....|....*....|....*....|.
gi 737931424 275 QGLIQTYINFdgtLSSWWTKIAIGILLFIFI 305
Cdd:cd06581 232 LVLLPELLRS---LGPGLRLLVFGLLLILVV 259
|
|
| LivM |
COG4177 |
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport ... |
37-305 |
3.53e-10 |
|
ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism];
Pssm-ID: 443336 [Multi-domain] Cd Length: 285 Bit Score: 59.71 E-value: 3.53e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 37 NILTDNAFLGIVAVGMTFVILSGGIdLSVGSViAFTGV---FLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALK 113
Cdd:COG4177 6 SLLTLILIYAILALGLNLLLGYTGL-LSLGHA-AFFGIgayAAALLTTHLGLPFWLALLLAGLVAALLGLLIGLPALRLR 83
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 114 IPAF-IITLAGMFFLRGVsyLVSEESI---PIDHPLYDTLSGLAWTIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQV 189
Cdd:COG4177 84 GDYLaIATLAFAEIVRLL--ALNLESLtggADGLSGIPRPTLFGLDLGSPLAFYYLVLALLVLVLLLLRRLVRSRFGRAL 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 190 YAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTQ-AGYALAGVGVELDAIASVVIggtllsGGVGTVLGT 268
Cdd:COG4177 162 RAIRENEIAAEALGINVTRYKLLAFVLSAALAGLAGALYAHYVGfVSPESFSFLLSIEILLMVVL------GGLGSLLGP 235
|
250 260 270
....*....|....*....|....*....|....*..
gi 737931424 269 LFGVGIQGLIQTYINFdgtLSSWWTkIAIGILLFIFI 305
Cdd:COG4177 236 VLGAVLLVLLPELLRS---LPEYRL-LIFGLLLILVV 268
|
|
| NupP |
COG4603 |
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and ... |
79-227 |
5.19e-08 |
|
ABC-type guanosine uptake system NupNOPQ, permease component NupP [Nucleotide transport and metabolism];
Pssm-ID: 443653 [Multi-domain] Cd Length: 356 Bit Score: 53.59 E-value: 5.19e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 79 AIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALK----IPAFIITLagMF---FLRGVSYLVSeesipidHPLYDTLSG 151
Cdd:COG4603 104 GLALPGLPGPLHLPLALLAGALAGALWAAIPGLLKarfgVNEVITTL--MLnyiALYLVNYLVR-------GPLRDPGSG 174
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 152 L---------AW--TIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGL 220
Cdd:COG4603 175 FpqtppipesARlpRLLPGTRLHLGLLIALLAAVLVWVLLNRTTLGYELRAVGLNPRAARYAGINVKRLIVLAMLISGAL 254
|
....*..
gi 737931424 221 ATLAGIV 227
Cdd:COG4603 255 AGLAGAV 261
|
|
| COG4120 |
COG4120 |
ABC-type uncharacterized transport system, permease component [General function prediction ... |
42-272 |
7.34e-08 |
|
ABC-type uncharacterized transport system, permease component [General function prediction only];
Pssm-ID: 443296 Cd Length: 296 Bit Score: 52.81 E-value: 7.34e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 42 NAFLGIVAVGMTFVILSGGI----------DLSVGSVIAFTGVFLAKAIGFwGLSPLVAFPLVLVMGCAFGAFMGWLIDA 111
Cdd:COG4120 4 NLLIGALEQGLIYAIMALGVyitfrildfpDLTVDGSFPLGAAVAAVLIVA-GVNPFLATLAAFLAGALAGLVTGLLHTK 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 112 LKIPAFiitLAG---MFFLRGVSYLVSEES-IPIDHplYDTLSGLAWTIPGGGRLSAMGLLMLLVVILGIFLAH--RTRF 185
Cdd:COG4120 83 LKIPPL---LAGiltMTALYSINLRIMGKPnIPLLG--EDTIFTLLPDLGLPGDWAKLLVLLVIVLVIKLLLDWflKTEL 157
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 186 GNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLATLAGIVFSIYTqaGYALA--GVGVELDAIASVVIGGTLLsgGVG 263
Cdd:COG4120 158 GLALRATGDNPQMARALGINTDRMKILGLALSNGLVALSGALVAQYQ--GFADVnmGIGTIVIGLASVIIGEVLF--GSR 233
|
....*....
gi 737931424 264 TVLGTLFGV 272
Cdd:COG4120 234 SILRRLLAV 242
|
|
| urea_trans_UrtB |
TIGR03409 |
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC ... |
76-303 |
7.43e-06 |
|
urea ABC transporter, permease protein UrtB; Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. [Transport and binding proteins, Amino acids, peptides and amines]
Pssm-ID: 200272 [Multi-domain] Cd Length: 291 Bit Score: 46.85 E-value: 7.43e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 76 LAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLI---------DALkIPAFIITLAGMFFLRGVsylVSEESIPIDHPly 146
Cdd:TIGR03409 52 LFSSPGLADLYLLIAIPLAFLVSALLGALIERTVirhlygrplDTL-LATWGISLILQQAVRSI---FGAPNVPVTAP-- 125
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 147 DTLSGlAWTIPGG-----GRLSAMGLLMLLVVILGIFLaHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTGLA 221
Cdd:TIGR03409 126 EWLSG-GLEITGAlslpyNRLFIIVLALAVLLALALLL-YRTRLGLRVRAVTQNRSMAAALGINTRRVDALTFALGSGIA 203
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 222 TLAGIVFSIYTQAGYALaGVGVELDAIASVVIggtllsGGVGTVLGTLFGVGIQGLIQTYINFDGTLSSWWTKIAIGILL 301
Cdd:TIGR03409 204 GVAGVALTLIGNVGPTL-GQLYIVDSFLVVVF------GGVGSLWGTVVAAFGLGVLNKILEYFTGASLAKVLVLVLIIL 276
|
..
gi 737931424 302 FI 303
Cdd:TIGR03409 277 FL 278
|
|
| TM_PBP1_transp_TpRbsC_like |
cd06580 |
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. ... |
45-255 |
4.16e-05 |
|
Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Pssm-ID: 119322 [Multi-domain] Cd Length: 234 Bit Score: 43.97 E-value: 4.16e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 45 LGIVAVGMTFVILSGGIDLSVGSVIAFTGVFLAKAIGFWGLSPLVAFPLVLVMGCAFGAFMGWLIDALKIpafiitlagm 124
Cdd:cd06580 4 LILAALGVAISFRAGVFNIGLEGQMLLGAFAAALVALYLGLPATGSLPLGLLAAALAGALWALLPALLKA---------- 73
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 125 ffLRGVSylvseesipidhplyDTLSGLAWTIPGGGRLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGI 204
Cdd:cd06580 74 --KLGVN---------------EVISGLMLNYIALGLTSYLLLLALLLVILVWLLLYRTRFGLRLRAVGENPRAARYAGI 136
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....
gi 737931424 205 PTRSTIVRIYMLSTGLATLAGIVFSIYTQAGYAL---AGVGveLDAIASVVIGG 255
Cdd:cd06580 137 NVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEgmsAGYG--FIAIAVALLGR 188
|
|
| NupQ |
COG1079 |
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and ... |
70-236 |
2.45e-03 |
|
ABC-type guanosine uptake system NupNOPQ, permease subunit NupQ [Nucleotide transport and metabolism];
Pssm-ID: 440697 [Multi-domain] Cd Length: 309 Bit Score: 39.28 E-value: 2.45e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 70 AFTGVFLAKAIGfwglSPLVAFPLVLVMGCAFGAFMGWLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPIDHPLYDTL 149
Cdd:COG1079 49 AFAGFAVAYLTG----SPWLGLLAAALAGALLALLHAFLTITLRANQIVSGLALNLLALGLTAFLGRLLFGQGGQTPSIP 124
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 737931424 150 SGLAWTIPG-------GG---RLSAMGLLMLLVVILGIFLAHRTRFGNQVYAIGGNATSANLMGIPTRSTIVRIYMLSTG 219
Cdd:COG1079 125 GLPPIPIPGlsdipvlGPllfGQSPLVYLALLLVPLVWWVLYRTRFGLRLRAVGENPAAADALGINVYRIRYLAVLIGGA 204
|
170
....*....|....*..
gi 737931424 220 LATLAGIVFSIYTQAGY 236
Cdd:COG1079 205 LAGLGGAYLSLGYVGSF 221
|
|
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