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Conserved domains on  [gi|738096527|ref|WP_036055177|]
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glycine C-acetyltransferase [Burkholderia gladioli]

Protein Classification

PLP-dependent aspartate aminotransferase family protein( domain architecture ID 10012856)

PLP-dependent aspartate aminotransferase family protein similar to 8-amino-7-oxononanoate synthase (EC 2.3.1.47) and glycine C-acetyltransferase (EC2.3.1.29)

EC:  2.3.1.-
Gene Ontology:  GO:0030170|GO:0009058|GO:0016740
PubMed:  10800595
SCOP:  4000675

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK06939 PRK06939
2-amino-3-ketobutyrate coenzyme A ligase; Provisional
1-399 0e+00

2-amino-3-ketobutyrate coenzyme A ligase; Provisional


:

Pssm-ID: 235893 [Multi-domain]  Cd Length: 397  Bit Score: 782.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   1 MRDAFLAHVRGTLDQIRADGFYKTEREIASPQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVR 80
Cdd:PRK06939   1 MSGAFYAQLREELEEIKAEGLYKEERVITSPQGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  81 FICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQD 160
Cdd:PRK06939  81 FICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMAD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 161 LEAKLREADEAGARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTG 240
Cdd:PRK06939 161 LEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 241 TLGKALGGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLasDEGARLRRRVRENGAHFRRRMSEAGF 320
Cdd:PRK06939 241 TLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL--EESDELRDRLWENARYFREGMTAAGF 318
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 738096527 321 TLVPGEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLGVI 399
Cdd:PRK06939 319 TLGPGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELGVI 397
 
Name Accession Description Interval E-value
PRK06939 PRK06939
2-amino-3-ketobutyrate coenzyme A ligase; Provisional
1-399 0e+00

2-amino-3-ketobutyrate coenzyme A ligase; Provisional


Pssm-ID: 235893 [Multi-domain]  Cd Length: 397  Bit Score: 782.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   1 MRDAFLAHVRGTLDQIRADGFYKTEREIASPQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVR 80
Cdd:PRK06939   1 MSGAFYAQLREELEEIKAEGLYKEERVITSPQGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  81 FICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQD 160
Cdd:PRK06939  81 FICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMAD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 161 LEAKLREADEAGARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTG 240
Cdd:PRK06939 161 LEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 241 TLGKALGGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLasDEGARLRRRVRENGAHFRRRMSEAGF 320
Cdd:PRK06939 241 TLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL--EESDELRDRLWENARYFREGMTAAGF 318
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 738096527 321 TLVPGEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLGVI 399
Cdd:PRK06939 319 TLGPGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELGVI 397
2am3keto_CoA TIGR01822
glycine C-acetyltransferase; This model represents a narrowly defined clade of animal and ...
5-399 0e+00

glycine C-acetyltransferase; This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase, now called glycine C-acetyltransferase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. [Energy metabolism, Amino acids and amines]


Pssm-ID: 130881 [Multi-domain]  Cd Length: 393  Bit Score: 621.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527    5 FLAHVRGTLDQIRADGFYKTEREIASPQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICG 84
Cdd:TIGR01822   1 FYAQLAAELESIREAGLFKSERIITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   85 TQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAK 164
Cdd:TIGR01822  81 TQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  165 LREADEAGARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGK 244
Cdd:TIGR01822 161 LKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  245 ALGGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLasDEGARLRRRVRENGAHFRRRMSEAGFTLVP 324
Cdd:TIGR01822 241 ALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAAGFDIKP 318
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 738096527  325 GEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLGVI 399
Cdd:TIGR01822 319 ADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELGVI 393
BioF COG0156
7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]; ...
5-394 0e+00

7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]; 7-keto-8-aminopelargonate synthetase or related enzyme is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 439926 [Multi-domain]  Cd Length: 385  Bit Score: 558.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   5 FLAHVRGTLDQIRADGFYKTEREIASPQAADVKLaDGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICG 84
Cdd:COG0156    1 LLDRLEAELAALKAAGLYRYLRVLESPQGPRVTI-DGREVLNFSSNDYLGLANHPRVIEAAAEALDRYGTGSGGSRLVSG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  85 TQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAK 164
Cdd:COG0156   80 TTPLHEELEEELAEFLGKEAALLFSSGYAANLGVISALAGRGDLIFSDELNHASIIDGARLSGAKVVRFRHNDMDDLERL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 165 LREADEagARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGK 244
Cdd:COG0156  160 LKKARA--ARRKLIVTDGVFSMDGDIAPLPEIVELAEKYGALLYVDDAHGTGVLGETGRGLVEHFGLEDRVDIIMGTLSK 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 245 ALgGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLASDEgaRLRRRVRENGAHFRRRMSEAGFTLVP 324
Cdd:COG0156  238 AL-GSSGGFVAGSKELIDYLRNRARPFIFSTALPPAVAAAALAALEILREEP--ELRERLWENIAYFREGLKELGFDLGP 314
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 325 GEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGK 394
Cdd:COG0156  315 SESPIVPVIVGDAERALALADALLERGIYVSAIRPPTVPKGTARLRITLSAAHTEEDIDRLLEALAEVGK 384
KBL_like cd06454
KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate ...
44-393 4.24e-160

KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.


Pssm-ID: 99747 [Multi-domain]  Cd Length: 349  Bit Score: 453.94  E-value: 4.24e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  44 VLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLL 123
Cdd:cd06454    3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 124 GEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAKLREADEaGARFKLIATDGVFSMDGIIADLKGVCDLADRY 203
Cdd:cd06454   83 GKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARR-PYGKKLIVTEGVYSMDGDIAPLPELVDLAKKY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 204 GALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGKALgGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAE 283
Cdd:cd06454  162 GAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAF-GAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 284 ASLAVLELLASdeGARLRRRVRENGAHFRRRMSEAGFTLVPGE-HPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVV 362
Cdd:cd06454  241 AALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSPsHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTV 318
                        330       340       350
                 ....*....|....*....|....*....|.
gi 738096527 363 PRGRARIRTQMSAAHTPEQIDRAVDAFVRVG 393
Cdd:cd06454  319 PRGTARLRISLSAAHTKEDIDRLLEALKEVG 349
Aminotran_1_2 pfam00155
Aminotransferase class I and II;
42-389 3.16e-63

Aminotransferase class I and II;


Pssm-ID: 395103 [Multi-domain]  Cd Length: 351  Bit Score: 206.39  E-value: 3.16e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   42 AGVLNFCANNYLGLAndrrLVAAAAAGLErdgFGMASVRFICGTQTVHKQLEAALSRFLGT--------DDTILYSSCFD 113
Cdd:pfam00155   1 TDKINLGSNEYLGDT----LPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFLGRspvlkldrEAAVVFGSGAG 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  114 ANGGLFETLLGE-EDAIISDELNHASIIDGVRLSKAKRFRYK-------NNDMQDLEAKLREADeagarfKLIATDGVFS 185
Cdd:pfam00155  74 ANIEALIFLLANpGDAILVPAPTYASYIRIARLAGGEVVRYPlydsndfHLDFDALEAALKEKP------KVVLHTSPHN 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  186 MDGIIADLKGVCDLAD---RYGALVMVDDSHAVGFIGEHGRgTPEHCGVADRVD-IVTGTLGKALG--GASGGYVSARKE 259
Cdd:pfam00155 148 PTGTVATLEELEKLLDlakEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNlLVVGSFSKAFGlaGWRVGYILGNAA 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  260 IVELLRQRSRPYLFSNTLAPSIAEASLAvlELLASDEGARLRRRVRENGAHFRRRMSEAGFTLVPGEHPIIPVMLGDAQV 339
Cdd:pfam00155 227 VISQLRKLARPFYSSTHLQAAAAAALSD--PLLVASELEEMRQRIKERRDYLRDGLQAAGLSVLPSQAGFFLLTGLDPET 304
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 738096527  340 ATRMADALLAE-GVYVIGFSFPVVPrgrARIRTQMsAAHTPEQIDRAVDAF 389
Cdd:pfam00155 305 AKELAQVLLEEvGVYVTPGSSPGVP---GWLRITV-AGGTEEELEELLEAI 351
 
Name Accession Description Interval E-value
PRK06939 PRK06939
2-amino-3-ketobutyrate coenzyme A ligase; Provisional
1-399 0e+00

2-amino-3-ketobutyrate coenzyme A ligase; Provisional


Pssm-ID: 235893 [Multi-domain]  Cd Length: 397  Bit Score: 782.07  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   1 MRDAFLAHVRGTLDQIRADGFYKTEREIASPQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVR 80
Cdd:PRK06939   1 MSGAFYAQLREELEEIKAEGLYKEERVITSPQGADITVADGKEVINFCANNYLGLANHPELIAAAKAALDSHGFGMASVR 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  81 FICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQD 160
Cdd:PRK06939  81 FICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETLLGKEDAIISDALNHASIIDGVRLCKAKRYRYANNDMAD 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 161 LEAKLREADEAGARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTG 240
Cdd:PRK06939 161 LEAQLKEAKEAGARHKLIATDGVFSMDGDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITG 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 241 TLGKALGGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLasDEGARLRRRVRENGAHFRRRMSEAGF 320
Cdd:PRK06939 241 TLGKALGGASGGYTAGRKEVIDWLRQRSRPYLFSNSLAPAIVAASIKVLELL--EESDELRDRLWENARYFREGMTAAGF 318
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 738096527 321 TLVPGEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLGVI 399
Cdd:PRK06939 319 TLGPGEHPIIPVMLGDAKLAQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGKELGVI 397
2am3keto_CoA TIGR01822
glycine C-acetyltransferase; This model represents a narrowly defined clade of animal and ...
5-399 0e+00

glycine C-acetyltransferase; This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase, now called glycine C-acetyltransferase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. [Energy metabolism, Amino acids and amines]


Pssm-ID: 130881 [Multi-domain]  Cd Length: 393  Bit Score: 621.83  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527    5 FLAHVRGTLDQIRADGFYKTEREIASPQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICG 84
Cdd:TIGR01822   1 FYAQLAAELESIREAGLFKSERIITSPQGADIRVADGREVLNFCANNYLGLSSHPDLIQAAKDALDEHGFGMSSVRFICG 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   85 TQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAK 164
Cdd:TIGR01822  81 TQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMADLEAQ 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  165 LREADEAGARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGK 244
Cdd:TIGR01822 161 LKEARAAGARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGK 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  245 ALGGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLasDEGARLRRRVRENGAHFRRRMSEAGFTLVP 324
Cdd:TIGR01822 241 ALGGASGGFTTARKEVVELLRQRSRPYLFSNSLPPAVVGASIKVLEML--EASNELRDRLWANTRYFRERMEAAGFDIKP 318
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 738096527  325 GEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLGVI 399
Cdd:TIGR01822 319 ADHPIIPVMLYDAVLAQRFARRLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGRELGVI 393
BioF COG0156
7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]; ...
5-394 0e+00

7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]; 7-keto-8-aminopelargonate synthetase or related enzyme is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 439926 [Multi-domain]  Cd Length: 385  Bit Score: 558.51  E-value: 0e+00
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   5 FLAHVRGTLDQIRADGFYKTEREIASPQAADVKLaDGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICG 84
Cdd:COG0156    1 LLDRLEAELAALKAAGLYRYLRVLESPQGPRVTI-DGREVLNFSSNDYLGLANHPRVIEAAAEALDRYGTGSGGSRLVSG 79
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  85 TQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAK 164
Cdd:COG0156   80 TTPLHEELEEELAEFLGKEAALLFSSGYAANLGVISALAGRGDLIFSDELNHASIIDGARLSGAKVVRFRHNDMDDLERL 159
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 165 LREADEagARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGK 244
Cdd:COG0156  160 LKKARA--ARRKLIVTDGVFSMDGDIAPLPEIVELAEKYGALLYVDDAHGTGVLGETGRGLVEHFGLEDRVDIIMGTLSK 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 245 ALgGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLASDEgaRLRRRVRENGAHFRRRMSEAGFTLVP 324
Cdd:COG0156  238 AL-GSSGGFVAGSKELIDYLRNRARPFIFSTALPPAVAAAALAALEILREEP--ELRERLWENIAYFREGLKELGFDLGP 314
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 325 GEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGK 394
Cdd:COG0156  315 SESPIVPVIVGDAERALALADALLERGIYVSAIRPPTVPKGTARLRITLSAAHTEEDIDRLLEALAEVGK 384
KBL_like cd06454
KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate ...
44-393 4.24e-160

KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.


Pssm-ID: 99747 [Multi-domain]  Cd Length: 349  Bit Score: 453.94  E-value: 4.24e-160
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  44 VLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLL 123
Cdd:cd06454    3 VLNFCSNDYLGLANHPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTLA 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 124 GEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAKLREADEaGARFKLIATDGVFSMDGIIADLKGVCDLADRY 203
Cdd:cd06454   83 GKGDLIISDSLNHASIIDGIRLSGAKKRIFKHNDMEDLEKLLREARR-PYGKKLIVTEGVYSMDGDIAPLPELVDLAKKY 161
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 204 GALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGKALgGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAE 283
Cdd:cd06454  162 GAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAF-GAVGGYIAGSKELIDYLRSYARGFIFSTSLPPAVAA 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 284 ASLAVLELLASdeGARLRRRVRENGAHFRRRMSEAGFTLVPGE-HPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVV 362
Cdd:cd06454  241 AALAALEVLQG--GPERRERLQENVRYLRRGLKELGFPVGGSPsHIIPPLIGDDPAKAVAFSDALLERGIYVQAIRYPTV 318
                        330       340       350
                 ....*....|....*....|....*....|.
gi 738096527 363 PRGRARIRTQMSAAHTPEQIDRAVDAFVRVG 393
Cdd:cd06454  319 PRGTARLRISLSAAHTKEDIDRLLEALKEVG 349
PRK05958 PRK05958
8-amino-7-oxononanoate synthase; Reviewed
4-393 2.33e-130

8-amino-7-oxononanoate synthase; Reviewed


Pssm-ID: 235655 [Multi-domain]  Cd Length: 385  Bit Score: 379.50  E-value: 2.33e-130
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   4 AFLAHVRGTLDQIRADGFYKTEREIASPQAADVKLaDGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFIC 83
Cdd:PRK05958   2 SWLDRLEAALAQRRAAGLYRSLRPREGGAGRWLVV-DGRRMLNFASNDYLGLARHPRLIAAAQQAARRYGAGSGGSRLVT 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  84 GTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEA 163
Cdd:PRK05958  81 GNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTALAGKGDLIVSDKLNHASLIDGARLSRARVRRYPHNDVDALEA 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 164 KLREADeagARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVD-IVTGTL 242
Cdd:PRK05958 161 LLAKWR---AGRALIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDvILVGTL 237
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 243 GKALgGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLASDEGarLRRRVRENGAHFRRRMSEAGFTL 322
Cdd:PRK05958 238 GKAL-GSSGAAVLGSETLIDYLINRARPFIFTTALPPAQAAAARAALRILRREPE--RRERLAALIARLRAGLRALGFQL 314
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 738096527 323 VPGEHPIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVG 393
Cdd:PRK05958 315 MDSQSAIQPLIVGDNERALALAAALQEQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL 385
bioF TIGR00858
8-amino-7-oxononanoate synthase; 7-keto-8-aminopelargonic acid synthetase is an alternate name. ...
28-389 5.46e-128

8-amino-7-oxononanoate synthase; 7-keto-8-aminopelargonic acid synthetase is an alternate name. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]


Pssm-ID: 273303 [Multi-domain]  Cd Length: 360  Bit Score: 372.76  E-value: 5.46e-128
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   28 IASPQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICGTQTVHKQLEAALSRFLGTDDTIL 107
Cdd:TIGR00858   2 PLDRGPGPEVVRDGRRLLNFSSNDYLGLASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  108 YSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAKLREADeaGARFKLIATDGVFSMD 187
Cdd:TIGR00858  82 FSSGYLANVGVISALVGKGDLILSDALNHASLIDGCRLSGARVRRYRHNDVEHLERLLEKNR--GERRKLIVTDGVFSMD 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  188 GIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVA-DRVDIVTGTLGKALGGAsGGYVSARKEIVELLRQ 266
Cdd:TIGR00858 160 GDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKpEPVDIQVGTLSKALGSY-GAYVAGSQALIDYLIN 238
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  267 RSRPYLFSNTLAPSIAEASLAVLELLAsdEGARLRRRVRENGAHFRRRMSEAGFTLVPGEHPIIPVMLGDAQVATRMADA 346
Cdd:TIGR00858 239 RARTLIFSTALPPAVAAAALAALELIQ--EEPWRREKLLALIARLRAGLEALGFTLMPSCTPIVPVIIGDNASALALAEE 316
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 738096527  347 LLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAF 389
Cdd:TIGR00858 317 LQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEAL 359
5aminolev_synth TIGR01821
5-aminolevulinic acid synthase; This model represents 5-aminolevulinic acid synthase, an ...
8-398 7.56e-97

5-aminolevulinic acid synthase; This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]


Pssm-ID: 273820 [Multi-domain]  Cd Length: 402  Bit Score: 294.71  E-value: 7.56e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527    8 HVRGTLDQIRADGFYKTEREI-----ASPQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFI 82
Cdd:TIGR01821   6 FFNKEIDKLHLEGRYRVFADLerqagEFPFAQWHRPDGAKDVTVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGGTRNI 85
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   83 CGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETL--LGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQD 160
Cdd:TIGR01821  86 SGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLakIIPGCVIFSDELNHASMIEGIRHSGAEKFIFRHNDVAH 165
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  161 LEAKLREADEAgaRFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTG 240
Cdd:TIGR01821 166 LEKLLQSVDPN--RPKIIAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEG 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  241 TLGKALgGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLASDEgaRLRRRVRENGAHFRRRMSEAGF 320
Cdd:TIGR01821 244 TLAKAF-GVVGGYIAASRKLIDAIRSYAPGFIFTTSLPPAIAAGATASIRHLKESQ--DLRRAHQENVKRLKNLLEALGI 320
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 738096527  321 TLVPGEHPIIPVMLGDAQVATRMADALLAE-GVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLGV 398
Cdd:TIGR01821 321 PVIPNPSHIVPVIIGDAALCKKVSDLLLNKhGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWDRLGL 399
PRK13392 PRK13392
5-aminolevulinate synthase; Provisional
5-398 5.12e-81

5-aminolevulinate synthase; Provisional


Pssm-ID: 184023 [Multi-domain]  Cd Length: 410  Bit Score: 254.39  E-value: 5.12e-81
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   5 FLAHVRGTLDQIRADGFYKT----EREIAS-PQAADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASV 79
Cdd:PRK13392   4 YDSYFDAALAQLHQEGRYRVfadlEREAGRfPRARDHGPDGPRRVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAGGT 83
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  80 RFICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETL--LGEEDAIISDELNHASIIDGVRLSKAKRFRYKNND 157
Cdd:PRK13392  84 RNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLgkLLPGCVILSDALNHASMIEGIRRSGAEKQVFRHND 163
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 158 MQDLEAKLREADEAgaRFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDI 237
Cdd:PRK13392 164 LADLEEQLASVDPD--RPKLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDM 241
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 238 VTGTLGKALgGASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLELLASDEGARLRRRVREngAHFRRRMSE 317
Cdd:PRK13392 242 IQGTLAKAF-GCLGGYIAASADLIDFVRSFAPGFIFTTALPPAVAAGATAAIRHLKTSQTERDAHQDRV--AALKAKLNA 318
                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 318 AGFTLVPGEHPIIPVMLGDAQVATRMADALLAE-GVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSL 396
Cdd:PRK13392 319 NGIPVMPSPSHIVPVMVGDPTLCKAISDRLMSEhGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWDRL 398

                 ..
gi 738096527 397 GV 398
Cdd:PRK13392 399 EL 400
PLN02483 PLN02483
serine palmitoyltransferase
45-398 1.14e-68

serine palmitoyltransferase


Pssm-ID: 178101 [Multi-domain]  Cd Length: 489  Bit Score: 224.64  E-value: 1.14e-68
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  45 LNFCANNYLGLAN-DRRLVAAAAAGLERDGFGMASVRFICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLL 123
Cdd:PLN02483 103 LNLGSYNYLGFAAaDEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPALI 182
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 124 GEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAKLREADEAGA-----RFK--LIATDGVFSMDGIIADLKGV 196
Cdd:PLN02483 183 GKGGLIISDSLNHNSIVNGARGSGATIRVFQHNTPSHLEEVLREQIAEGQprthrPWKkiIVIVEGIYSMEGELCKLPEI 262
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 197 CDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGV--ADrVDIVTGTLGKALgGASGGYVSARKEIVELLRQRSRPYLFS 274
Cdd:PLN02483 263 VAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVdpAD-VDIMMGTFTKSF-GSCGGYIAGSKELIQYLKRTCPAHLYA 340
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 275 NTLAPSIAEASLAVLELL----ASDEGARLRRRVRENGAHFRRRMSEAGFTlVPGEH--PIIPVMLGDAQVATRMADALL 348
Cdd:PLN02483 341 TSMSPPAVQQVISAIKVIlgedGTNRGAQKLAQIRENSNFFRSELQKMGFE-VLGDNdsPVMPIMLYNPAKIPAFSRECL 419
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|
gi 738096527 349 AEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLGV 398
Cdd:PLN02483 420 KQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGDLVGI 469
Aminotran_1_2 pfam00155
Aminotransferase class I and II;
42-389 3.16e-63

Aminotransferase class I and II;


Pssm-ID: 395103 [Multi-domain]  Cd Length: 351  Bit Score: 206.39  E-value: 3.16e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527   42 AGVLNFCANNYLGLAndrrLVAAAAAGLErdgFGMASVRFICGTQTVHKQLEAALSRFLGT--------DDTILYSSCFD 113
Cdd:pfam00155   1 TDKINLGSNEYLGDT----LPAVAKAEKD---ALAGGTRNLYGPTDGHPELREALAKFLGRspvlkldrEAAVVFGSGAG 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  114 ANGGLFETLLGE-EDAIISDELNHASIIDGVRLSKAKRFRYK-------NNDMQDLEAKLREADeagarfKLIATDGVFS 185
Cdd:pfam00155  74 ANIEALIFLLANpGDAILVPAPTYASYIRIARLAGGEVVRYPlydsndfHLDFDALEAALKEKP------KVVLHTSPHN 147
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  186 MDGIIADLKGVCDLAD---RYGALVMVDDSHAVGFIGEHGRgTPEHCGVADRVD-IVTGTLGKALG--GASGGYVSARKE 259
Cdd:pfam00155 148 PTGTVATLEELEKLLDlakEHNILLLVDEAYAGFVFGSPDA-VATRALLAEGPNlLVVGSFSKAFGlaGWRVGYILGNAA 226
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  260 IVELLRQRSRPYLFSNTLAPSIAEASLAvlELLASDEGARLRRRVRENGAHFRRRMSEAGFTLVPGEHPIIPVMLGDAQV 339
Cdd:pfam00155 227 VISQLRKLARPFYSSTHLQAAAAAALSD--PLLVASELEEMRQRIKERRDYLRDGLQAAGLSVLPSQAGFFLLTGLDPET 304
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|.
gi 738096527  340 ATRMADALLAE-GVYVIGFSFPVVPrgrARIRTQMsAAHTPEQIDRAVDAF 389
Cdd:pfam00155 305 AKELAQVLLEEvGVYVTPGSSPGVP---GWLRITV-AGGTEEELEELLEAI 351
PLN02955 PLN02955
8-amino-7-oxononanoate synthase
27-389 6.46e-55

8-amino-7-oxononanoate synthase


Pssm-ID: 178541 [Multi-domain]  Cd Length: 476  Bit Score: 188.34  E-value: 6.46e-55
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  27 EIASPQA-ADVKLADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICGTQTVHKQLEAALSRFLGTDDT 105
Cdd:PLN02955  86 EIFSGDAlAEERKGRFKKLLLFSGNDYLGLSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDC 165
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 106 ILYSSCFDANGGLF--------------ETLLGEEDAIISDELNHASIIDGVRLSK----AKRFRYKNNDMQDLEAKLRE 167
Cdd:PLN02955 166 LVCPTGFAANMAAMvaigsvasllaasgKPLKNEKVAIFSDALNHASIIDGVRLAErqgnVEVFVYRHCDMYHLNSLLSS 245
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 168 ADeagARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGKAlG 247
Cdd:PLN02955 246 CK---MKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKA-A 321
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 248 GASGGYVSARKEIVELLRQRSRPYLFSNTLAPSIAEASLAVLeLLASDEGARlRRRVRENGAHFRRrmseagFTLVPGEH 327
Cdd:PLN02955 322 GCHGGFIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAV-VVARKEKWR-RKAIWERVKEFKA------LSGVDISS 393
                        330       340       350       360       370       380
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 738096527 328 PIIPVMLGDAQVATRMADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAF 389
Cdd:PLN02955 394 PIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITAL 455
PLN02822 PLN02822
serine palmitoyltransferase
40-396 1.40e-52

serine palmitoyltransferase


Pssm-ID: 178417 [Multi-domain]  Cd Length: 481  Bit Score: 182.25  E-value: 1.40e-52
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  40 DGAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLF 119
Cdd:PLN02822 107 NGKDVVNFASANYLGLIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYSYGLSTIFSVI 186
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 120 ETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEA---KLREADEAGARF-KLIATDGVFSMDGIIADLKG 195
Cdd:PLN02822 187 PAFCKKGDIIVADEGVHWGIQNGLYLSRSTIVYFKHNDMESLRNtleKLTAENKRKKKLrRYIVVEAIYQNSGQIAPLDE 266
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 196 VCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVA-DRVDIVTGTLGKALgGASGGYVSARKEIVELLRQRSRPYLFS 274
Cdd:PLN02822 267 IVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPiEKIDIITAAMGHAL-ATEGGFCTGSARVVDHQRLSSSGYVFS 345
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 275 NTLAPSIAEASLAVLELLasDEGARLRRRVRENGAHFRRRMSEAGFTLVpGEHPIIPVML-----------GDAQVATRM 343
Cdd:PLN02822 346 ASLPPYLASAAITAIDVL--EDNPSVLAKLKENIALLHKGLSDIPGLSI-GSNTLSPIVFlhlekstgsakEDLSLLEHI 422
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*.
gi 738096527 344 ADALLAE-GVYVIGFSFPVVPRGR--ARIRTQMSAAHTPEQIDRAVDAFVRVGKSL 396
Cdd:PLN02822 423 ADRMLKEdSVLVVVSKRSTLDKCRlpVGIRLFVSAGHTESDILKASESLKRVAASV 478
PRK07179 PRK07179
quorum-sensing autoinducer synthase;
41-384 6.28e-48

quorum-sensing autoinducer synthase;


Pssm-ID: 180866 [Multi-domain]  Cd Length: 407  Bit Score: 167.88  E-value: 6.28e-48
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  41 GAGVLNFCANNYLGLANDRRLVAAAAAGLERDGFG--MASVrFICGTQTVHkQLEAALSRFLGTDDTILYSSCFDANGGL 118
Cdd:PRK07179  53 GPDAIILQSNDYLNLSGHPDIIKAQIAALQEEGDSlvMSAV-FLHDDSPKP-QFEKKLAAFTGFESCLLCQSGWAANVGL 130
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 119 FETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAKLREADEAgarfkLIATDGVFSMDGIIADLKGVCD 198
Cdd:PRK07179 131 LQTIADPNTPVYIDFFAHMSLWEGVRAAGAQAHPFRHNDVDHLRRQIERHGPG-----IIVVDSVYSTTGTIAPLADIVD 205
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 199 LADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVADRVDIVTGTLGKALGGaSGGYVSARKEIVELLRQRSRPYLFSNTLA 278
Cdd:PRK07179 206 IAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAG-RAGIITCPRELAEYVPFVSYPAIFSSTLL 284
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 279 P-SIA--EASLAVLEllASDEGarlRRRVRENGAHFRRRMSEAGFTlVPGEHPIIPVMLGDAQVATRMADALLAEGVYVI 355
Cdd:PRK07179 285 PhEIAglEATLEVIE--SADDR---RARLHANARFLREGLSELGYN-IRSESQIIALETGSERNTEVLRDALEERNVFGA 358
                        330       340
                 ....*....|....*....|....*....
gi 738096527 356 GFSFPVVPRGRARIRTQMSAAHTPEQIDR 384
Cdd:PRK07179 359 VFCAPATPKNRNLIRLSLNADLTASDLDR 387
PRK07505 PRK07505
hypothetical protein; Provisional
38-397 7.53e-43

hypothetical protein; Provisional


Pssm-ID: 181006 [Multi-domain]  Cd Length: 402  Bit Score: 154.37  E-value: 7.53e-43
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  38 LADGAGVLNFCANNYLGLANDRRLVAAAAAGLERDG-FGMASVRFICGTQtVHKQLEAALSRFLGTDdTILYSSCFDANG 116
Cdd:PRK07505  42 LADGHTFVNFVSCSYLGLDTHPAIIEGAVDALKRTGsLHLSSSRTRVRSQ-ILKDLEEALSELFGAS-VLTFTSCSAAHL 119
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 117 GLFETLL------GEEDAIISDELNHAS--IIDGVRLSKAKRFRYKNNDMQDLEAKLREadeaGARFKLIAtDGVFSMDG 188
Cdd:PRK07505 120 GILPLLAsghltgGVPPHMVFDKNAHASlnILKGICADETEVETIDHNDLDALEDICKT----NKTVAYVA-DGVYSMGG 194
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 189 IiADLKGVCDLADRYGALVMVDDSHAVGFIGEHGRG-TPEHCGVA--DRVdIVTGTLGKALGGASGGYVSARKEIVELLR 265
Cdd:PRK07505 195 I-APVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGyVRSELDYRlnERT-IIAASLGKAFGASGGVIMLGDAEQIELIL 272
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 266 QRSRPYLFSNTLAPSIAEASLAVLELLASDEGARLRRRVRENGAHFRRRM--SEAGFTLvpgehPIIPVMLGDAQVATRM 343
Cdd:PRK07505 273 RYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIptEQSGSFL-----PIRLIYIGDEDTAIKA 347
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....
gi 738096527 344 ADALLAEGVYVIGFSFPVVPRGRARIRTQMSAAHTPEQIDRAVDAFVRVGKSLG 397
Cdd:PRK07505 348 AKQLLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILDEGL 401
PLN03227 PLN03227
serine palmitoyltransferase-like protein; Provisional
45-388 2.94e-42

serine palmitoyltransferase-like protein; Provisional


Pssm-ID: 178766 [Multi-domain]  Cd Length: 392  Bit Score: 152.75  E-value: 2.94e-42
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  45 LNFCANNYLGLANDRRLVAAAAAGLERDGFGMASVRFICGTQTVHKQLEAALSRFLGTDDTILYSSCFDANGGLFETLLG 124
Cdd:PLN03227   1 LNFATHDFLSTSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAFAK 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 125 EEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLE---AKLREADEA-----GARFKLIATDGVFSMDGIIADLKGV 196
Cdd:PLN03227  81 RGDLLVVDRGVNEALLVGVSLSRANVRWFRHNDMKDLRrvlEQVRAQDVAlkrkpTDQRRFLVVEGLYKNTGTLAPLKEL 160
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 197 CDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGV--ADRVDIVTGTLGKALGGAsGGYVSARKEIVELLRQRSRPYLFS 274
Cdd:PLN03227 161 VALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLkpMVHAEIVTFSLENAFGSV-GGMTVGSEEVVDHQRLSGSGYCFS 239
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 275 NTLAPSIAEASLAVLELLASDEG--ARL---RRRVRE---NGAH-FRRRMSEAGFTLVPGEHPIIPVMLGDaQVATRMAD 345
Cdd:PLN03227 240 ASAPPFLAKADATATAGELAGPQllNRLhdsIANLYStltNSSHpYALKLRNRLVITSDPISPIIYLRLSD-QEATRRTD 318
                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|....*..
gi 738096527 346 A----------LLAEGVYVI--GFSFPVVPRGRAR--IRTQMSAAHTPEQIDRAVDA 388
Cdd:PLN03227 319 EtlildqiahhSLSEGVAVVstGGHVKKFLQLVPPpcLRVVANASHTREDIDKLLTV 375
AAT_I cd01494
Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP) ...
89-257 6.48e-28

Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V).


Pssm-ID: 99742 [Multi-domain]  Cd Length: 170  Bit Score: 107.85  E-value: 6.48e-28
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  89 HKQLEAALSRFLGT--DDTILYSSCFDANGGLFETLLGEEDAIISDELNHASII-DGVRLSKAK--RFRYKNNDMQDLEA 163
Cdd:cd01494    2 LEELEEKLARLLQPgnDKAVFVPSGTGANEAALLALLGPGDEVIVDANGHGSRYwVAAELAGAKpvPVPVDDAGYGGLDV 81
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 164 KLREADEAGARFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGfigehGRGTPEHCGVADRVDIVTGTLG 243
Cdd:cd01494   82 AILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGG-----ASPAPGVLIPEGGADVVTFSLH 156
                        170
                 ....*....|....
gi 738096527 244 KALGGASGGYVSAR 257
Cdd:cd01494  157 KNLGGEGGGVVIVK 170
PRK05937 PRK05937
8-amino-7-oxononanoate synthase; Provisional
41-383 1.10e-22

8-amino-7-oxononanoate synthase; Provisional


Pssm-ID: 102071 [Multi-domain]  Cd Length: 370  Bit Score: 98.31  E-value: 1.10e-22
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  41 GAGVLNFCANNYLGLANDRRLVAAAAAGLER-------DGFGMASVRFICGTQTVHKQLEAALSRFLGTDDTILYSSCFD 113
Cdd:PRK05937   3 ESLSIDFVTNDFLGFSRSDTLVHEVEKRYRLycrqfphAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPEAFIVPSGYM 82
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 114 ANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNNDMQDLEAKLREADEAGARFKLIATDGVFSMDGIIADL 193
Cdd:PRK05937  83 ANLGLCAHLSSVTDYVLWDEQVHISVVYSLSVISGWHQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAPL 162
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 194 KGVCDLADRYGALVMVDDSHAVGFIGEHGRGTPEHCGVaDRVDIVTGTLGKALGGASGGYVSARKEIVELLrQRSRPYLF 273
Cdd:PRK05937 163 EQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGY-ENFYAVLVTYSKALGSMGAALLSSSEVKQDLM-LNSPPLRY 240
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 274 SNTLAPSIAEASLAVLELLASdEGARLRRRVRENGAHFRRRMSEAGFTLVPgehpiiPVMLGD--AQVATRMadaLLAEG 351
Cdd:PRK05937 241 STGLPPHLLISIQVAYDFLSQ-EGELARKQLFRLKEYFAQKFSSAAPGCVQ------PIFLPGisEQELYSK---LVETG 310
                        330       340       350
                 ....*....|....*....|....*....|..
gi 738096527 352 VYVIGFSFPVVPrgraRIRTQMSAAHTPEQID 383
Cdd:PRK05937 311 IRVGVVCFPTGP----FLRVNLHAFNTEDEVD 338
OAT_like cd00610
Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP) ...
193-392 9.50e-18

Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.


Pssm-ID: 99735 [Multi-domain]  Cd Length: 413  Bit Score: 84.16  E-value: 9.50e-18
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 193 LKGVCDLADRYGALVMVDDShAVGFigehGR-GTP---EHCGVadRVDIVTgtLGKALGGAS--GGYVsARKEIVELLrq 266
Cdd:cd00610  214 LKALRELCRKHGILLIADEV-QTGF----GRtGKMfafEHFGV--EPDIVT--LGKGLGGGLplGAVL-GREEIMDAF-- 281
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 267 RSRPYLFSNTLA--PSIAEASLAVLELLASDegaRLRRRVRENGAHFRRRMSE-----------------AGFTLVPGEH 327
Cdd:cd00610  282 PAGPGLHGGTFGgnPLACAAALAVLEVLEEE---GLLENAAELGEYLRERLRElaekhplvgdvrgrglmIGIELVKDRA 358
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 738096527 328 PIIPvmlgDAQVATRMADALLAEGVYVIGFsfpvvprGRARIRTQMSAAHTPEQIDRAVDAFVRV 392
Cdd:cd00610  359 TKPP----DKELAAKIIKAALERGLLLRPS-------GGNVIRLLPPLIITEEEIDEGLDALDEA 412
AAT_like cd00609
Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
89-391 1.23e-11

Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.


Pssm-ID: 99734 [Multi-domain]  Cd Length: 350  Bit Score: 65.44  E-value: 1.23e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  89 HKQLEAALSRFLGT--------DDTILYSSCFDANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAK--RFRYKNNDM 158
Cdd:cd00609   38 LPELREAIAEWLGRrggvdvppEEIVVTNGAQEALSLLLRALLNPGDEVLVPDPTYPGYEAAARLAGAEvvPVPLDEEGG 117
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 159 QDLEAKLREAdEAGARFKLIA-------TDGVFSMDgiiaDLKGVCDLADRYGALVMVDDSHAvGFIGEHGRGTPEHCGV 231
Cdd:cd00609  118 FLLDLELLEA-AKTPKTKLLYlnnpnnpTGAVLSEE----ELEELAELAKKHGILIISDEAYA-ELVYDGEPPPALALLD 191
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 232 ADRVDIVTGTLGKALGGAS--GGYVSARKEIVELLRQRSRPYLFSNTlaPSIAEAslAVLELLASDEG--ARLRRRVREN 307
Cdd:cd00609  192 AYERVIVLRSFSKTFGLPGlrIGYLIAPPEELLERLKKLLPYTTSGP--STLSQA--AAAAALDDGEEhlEELRERYRRR 267
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 308 GAHFRRRMSEAGftlvpGEHPIIP-----VMLG-DAQVATRMADALLAE-GVYVI-GFSFPVVPRGRARIrtqmSAAHTP 379
Cdd:cd00609  268 RDALLEALKELG-----PLVVVKPsggffLWLDlPEGDDEEFLERLLLEaGVVVRpGSAFGEGGEGFVRL----SFATPE 338
                        330
                 ....*....|..
gi 738096527 380 EQIDRAVDAFVR 391
Cdd:cd00609  339 EELEEALERLAE 350
BioA COG0161
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme transport and metabolism]; ...
193-392 5.36e-10

Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme transport and metabolism]; Adenosylmethionine-8-amino-7-oxononanoate aminotransferase is part of the Pathway/BioSystem: Biotin biosynthesis


Pssm-ID: 439931 [Multi-domain]  Cd Length: 446  Bit Score: 60.84  E-value: 5.36e-10
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 193 LKGVCDLADRYGALvMVDDSHAVGFigehGR-GTP---EHCGVadRVDIVTgtLGKALggaSGGY-----VSARKEIVEL 263
Cdd:COG0161  236 LKRLREICDKYGIL-LIADEVITGF----GRtGKMfacEHAGV--TPDIIT--LAKGL---TGGYlplgaTLVSDEIYDA 303
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 264 LRQRSRP------YLFS-NTLAPSIAeasLAVLELLASDEgarLRRRVRENGAHFRRRMSE----------------AGF 320
Cdd:COG0161  304 FLDGDEAgafmhgHTYSgHPLACAAA---LANLDILEEED---LLENVAAIGAYLRAGLAEladhplvgdvrglgliGAI 377
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 738096527 321 TLVPGEHPIIPvMLGDAQVATRMADALLAEGVYV------IGFSFPVVprgrarIrtqmsaahTPEQIDRAVDAFVRV 392
Cdd:COG0161  378 ELVADKATKEP-FDPEGRVGARVYAAALERGLILrplgdtIYLMPPLI------I--------TEEEIDELVDALREA 440
PucG COG0075
Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism ...
163-398 8.88e-09

Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG is part of the Pathway/BioSystem: Serine biosynthesis


Pssm-ID: 439845 [Multi-domain]  Cd Length: 376  Bit Score: 56.64  E-value: 8.88e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 163 AKLREADEAGARFKLIA-------TdgvfsmdGIIADLKGVCDLADRYGALVMVDdshAVGFIGehgrGTPEHcgVAD-R 234
Cdd:COG0075  114 EEVEEALAADPDIKAVAvvhnetsT-------GVLNPLEEIGALAKEHGALLIVD---AVSSLG----GVPLD--MDEwG 177
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 235 VDIVTGTLGKALGGASG-GYVSARKEIVELLRQRSRP--YL-------------FSNTLAPSIAEASLAVLELLAsDEG- 297
Cdd:COG0075  178 IDVVVSGSQKCLMLPPGlAFVAVSERALEAIEARKLPsyYLdlklwlkywekgqTPYTPPVSLLYALREALDLIL-EEGl 256
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 298 -ARLRRRvRENGAHFRRRMSEAGFTLVPGEH---PII-PVMLGDAQVATRMADALLAEGVYVIGFSFPVVpRGRA-RIrt 371
Cdd:COG0075  257 eNRFARH-RRLAEALRAGLEALGLELFAEEEyrsPTVtAVRVPEGVDAAALRKRLKERYGIEIAGGLGPL-KGKIfRI-- 332
                        250       260       270
                 ....*....|....*....|....*....|.
gi 738096527 372 qmsaAH----TPEQIDRAVDAFVRVGKSLGV 398
Cdd:COG0075  333 ----GHmgyvNPEDVLRTLAALEEALRELGV 359
ArgD COG4992
Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase [Amino acid transport and ...
193-392 7.02e-08

Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase [Amino acid transport and metabolism]; Acetylornithine/succinyldiaminopimelate/putrescine aminotransferase is part of the Pathway/BioSystem: Arginine biosynthesis


Pssm-ID: 444016 [Multi-domain]  Cd Length: 396  Bit Score: 53.89  E-value: 7.02e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 193 LKGVCDLADRYGALVMVDDshaV--GFigehGR-GTP---EHCGVadRVDIVTgtLGKALGgasGGY----VSARKEIVE 262
Cdd:COG4992  204 LKGLRELCDEHGALLILDE---VqtGM----GRtGKLfayEHYGV--EPDILT--LAKGLG---GGFpigaVLAREEVAD 269
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 263 LLrqrsRPYL----FS-NTLApsiAEASLAVLELLASDEgarLRRRVRENGAHFRRRMSEA-----GFTLVPGEHPIIPV 332
Cdd:COG4992  270 VF----TPGDhgstFGgNPLA---CAAALAVLDVLEEEG---LLENVAEKGAYLREGLEALaakypLVKEVRGRGLMIGI 339
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 738096527 333 MLGDAqvATRMADALLAEGV-------YVIGFSFPVVprgrarIrtqmsaahTPEQIDRAVDAFVRV 392
Cdd:COG4992  340 ELDDP--AAEVVKALLEEGLlvnaagpNVIRLLPPLI------I--------TEEEIDEALAALEEA 390
Orn_deC_like cd00615
Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent ...
88-317 1.82e-05

Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.


Pssm-ID: 99739 [Multi-domain]  Cd Length: 294  Bit Score: 46.09  E-value: 1.82e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  88 VHKQLEAALSRFLGTDDTILY---SSCfdANGGLFETLLGEEDAIISDELNHASIIDGVRLSKAKRFRYKNN-------- 156
Cdd:cd00615   60 PIKEAQELAARAFGAKHTFFLvngTSS--SNKAVILAVCGPGDKILIDRNCHKSVINGLVLSGAVPVYLKPErnpyygia 137
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 157 ---DMQDLEAKLREADEAGArfkLIATDGVFsmDGIIADLKGVCDLADRYGALVMVDDSHaVGFIGEHGRgtPEHCGVAD 233
Cdd:cd00615  138 ggiPPETFKKALIEHPDAKA---AVITNPTY--YGICYNLRKIVEEAHHRGLPVLVDEAH-GAHFRFHPI--LPSSAAMA 209
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 234 RVDIVTGTLGKALGGAS-GGYVSARKEIVELLRQRSRPYLFSNTlAPS-IAEASLAVLELLASDEGARLRRRVRENGAHF 311
Cdd:cd00615  210 GADIVVQSTHKTLPALTqGSMIHVKGDLVNPDRVNEALNLHQST-SPSyLILASLDVARAMMALEGKELVEELIELALYA 288

                 ....*.
gi 738096527 312 RRRMSE 317
Cdd:cd00615  289 RQEINK 294
ARO8 COG1167
DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain ...
198-392 2.68e-05

DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain is part of the Pathway/BioSystem: Lysine biosynthesis


Pssm-ID: 440781 [Multi-domain]  Cd Length: 471  Bit Score: 45.98  E-value: 2.68e-05
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 198 DLADRYGALVMVDDSHavGFIGEHGRGTP------EHcgvaDRVdIVTGTLGKALggASG---GYVSARKEIVELLRQrs 268
Cdd:COG1167  269 ELARRHGVPIIEDDYD--SELRYDGRPPPplaaldAP----GRV-IYIGSFSKTL--APGlrlGYLVAPGRLIERLAR-- 337
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 269 rpYLFSNTLAPSIAEAsLAVLELLASDEGARLRRRVRE----------------NGAHFRRRMSEAGFTLVpgehpiipV 332
Cdd:COG1167  338 --LKRATDLGTSPLTQ-LALAEFLESGHYDRHLRRLRReyrarrdlllaalarhLPDGLRVTGPPGGLHLW--------L 406
                        170       180       190       200       210       220
                 ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 738096527 333 MLGDAQVATRMADALLAEGVYVI-GFSFPVVPRGRARIRtqMS-AAHTPEQIDRAVDAFVRV 392
Cdd:COG1167  407 ELPEGVDAEALAAAALARGILVApGSAFSADGPPRNGLR--LGfGAPSEEELEEALRRLAEL 466
Aminotran_5 pfam00266
Aminotransferase class-V; This domain is found in amino transferases, and other enzymes ...
123-216 2.19e-04

Aminotransferase class-V; This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-.


Pssm-ID: 425567 [Multi-domain]  Cd Length: 368  Bit Score: 43.00  E-value: 2.19e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  123 LGEEDAIISDELNHASIID---------GVRLSKAKRFRYKNNDMQDLEAKLREadeagaRFKLIATDGVFSMDGIIADL 193
Cdd:pfam00266  85 LKPGDEIVITEMEHHANLVpwqelakrtGARVRVLPLDEDGLLDLDELEKLITP------KTKLVAITHVSNVTGTIQPV 158
                          90       100
                  ....*....|....*....|...
gi 738096527  194 KGVCDLADRYGALVMVDDSHAVG 216
Cdd:pfam00266 159 PEIGKLAHQYGALVLVDAAQAIG 181
CGS_like cd00614
CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed ...
92-266 3.43e-04

CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.


Pssm-ID: 99738 [Multi-domain]  Cd Length: 369  Bit Score: 42.57  E-value: 3.43e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527  92 LEAALSRFLGTDDTILYSSCFDANGGLFETLLGEEDAIISDE---------LNHASIIDGVRLSKAkrfryknnDMQDLE 162
Cdd:cd00614   45 LEKKLAALEGGEAALAFSSGMAAISTVLLALLKAGDHVVASDdlyggtyrlFERLLPKLGIEVTFV--------DPDDPE 116
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 163 AkLREADEAGArfKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDDSHAVGFIG---EHGrgtpehcgvadrVDIVT 239
Cdd:cd00614  117 A-LEAAIKPET--KLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYLQrplELG------------ADIVV 181
                        170       180       190
                 ....*....|....*....|....*....|.
gi 738096527 240 GTLGKALGGAS---GGYVSAR-KEIVELLRQ 266
Cdd:cd00614  182 HSATKYIGGHSdviAGVVVGSgEALIQRLRF 212
CsdA COG0520
Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];
123-216 4.03e-04

Selenocysteine lyase/Cysteine desulfurase [Amino acid transport and metabolism];


Pssm-ID: 440286 [Multi-domain]  Cd Length: 396  Bit Score: 42.05  E-value: 4.03e-04
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 123 LGEEDAIISDELNHASIIDGVR-LSKAKRFRYK--------NNDMQDLEAKLREadeagaRFKLIATDGVFSMDGIIADL 193
Cdd:COG0520  100 LKPGDEILITEMEHHSNIVPWQeLAERTGAEVRvipldedgELDLEALEALLTP------RTKLVAVTHVSNVTGTVNPV 173
                         90       100
                 ....*....|....*....|...
gi 738096527 194 KGVCDLADRYGALVMVDDSHAVG 216
Cdd:COG0520  174 KEIAALAHAHGALVLVDGAQSVP 196
AGAT_like cd06451
Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate ...
157-322 2.71e-03

Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.


Pssm-ID: 99744 [Multi-domain]  Cd Length: 356  Bit Score: 39.58  E-value: 2.71e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 157 DMQDLEAKLREADeagarFKLIATDGVFSMDGIIADLKGVCDLADRYGALVMVDdshAVGFIGehgrGTPEHcgvADR-- 234
Cdd:cd06451  112 SPEEIAEALEQHD-----IKAVTLTHNETSTGVLNPLEGIGALAKKHDALLIVD---AVSSLG----GEPFR---MDEwg 176
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 738096527 235 VDI-VTGTlGKALGGASG-GYVSARKEIVELLRQRSRP---YLFSNTLAPSIAE--------------ASLAVLELLAsD 295
Cdd:cd06451  177 VDVaYTGS-QKALGAPPGlGPIAFSERALERIKKKTKPkgfYFDLLLLLKYWGEgysyphtppvnllyALREALDLIL-E 254
                        170       180
                 ....*....|....*....|....*....
gi 738096527 296 EG--ARLRRRvRENGAHFRRRMSEAGFTL 322
Cdd:cd06451  255 EGleNRWARH-RRLAKALREGLEALGLKL 282
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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